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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"23S Ribosomal RNA" AND author_orcid:"0000-0003-4713-2548" AND author_orcid:"0009-0006-0020-6019"

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EMD-19426

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Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Release date: May 22, 2024
Resolution: 2.64 Å
EM Method: Single-particle
Fitted PDBs: 8rpy

Lauer SM, Reepmeyer M, Berendes O, Klepacki D, Gasse J, Gabrielli S, Grubmuller H, Bock LV, Krizsan A, Nikolay R, Spahn CMT, Hoffmann R

Nat Commun (2024) 15 pp. 3945-3945 [ Pubmed: 38730238 DOI: doi:10.1038/s41467-024-48027-4 ]

Sample:

Large ribosomal subunit protein bl34 (5 kDa, Protein from Escherichia coli)
Apidaecins type 137 (2 kDa, Protein from Apis mellifera)
Large ribosomal subunit protein ul30 (6 kDa, Protein from Escherichia coli)
Large ribosomal subunit (Complex from Escherichia coli)
Large ribosomal subunit protein ul18 (12 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul3 (22 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl33 (5 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul16 (15 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul23 (10 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl17 (13 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl27 (8 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl32 (6 kDa, Protein from Escherichia coli)
5s ribosomal rna (38 kDa, RNA from Escherichia coli)
Api137 in complex with the large ribosomal subunit (Complex)
Large ribosomal subunit protein ul2 (29 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl21 (11 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl20 (13 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul13 (16 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl25 (10 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul24 (11 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul29 (7 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul15 (14 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl36a (4 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl31 (7 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl19 (13 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl28 (8 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl9 (15 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl35 (7 kDa, Protein from Escherichia coli)
23s ribosomal rna (941 kDa, RNA from Escherichia coli)
Api137 (Complex from Apis mellifera)
Large ribosomal subunit protein ul5 (20 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul4 (22 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul14 (13 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul22 (12 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul6 (18 kDa, Protein from Escherichia coli)

[Show more]

EMD-19427

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Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Release date: May 22, 2024
Resolution: 2.44 Å
EM Method: Single-particle
Fitted PDBs: 8rpz

Lauer SM, Reepmeyer M, Berendes O, Klepacki D, Gasse J, Gabrielli S, Grubmuller H, Bock LV, Krizsan A, Nikolay R, Spahn CMT, Hoffmann R

Nat Commun (2024) 15 pp. 3945-3945 [ Pubmed: 38730238 DOI: doi:10.1038/s41467-024-48027-4 ]

Sample:

Large ribosomal subunit protein bl34 (5 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul30 (6 kDa, Protein from Escherichia coli)
Large ribosomal subunit (Complex from Escherichia coli)
Large ribosomal subunit protein ul18 (12 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul3 (22 kDa, Protein from Escherichia coli)
Apidaecins type 88 (2 kDa, Protein from Apis mellifera)
Large ribosomal subunit protein bl33 (5 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul16 (15 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul23 (10 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl17 (13 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl27 (8 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl32 (6 kDa, Protein from Escherichia coli)
5s ribosomal rna (38 kDa, RNA from Escherichia coli)
Large ribosomal subunit protein ul2 (29 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl21 (11 kDa, Protein from Escherichia coli)
Api88 in complex with the large ribosomal subunit - conformation i (Complex)
Large ribosomal subunit protein bl20 (13 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul13 (16 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl25 (10 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul24 (11 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul29 (7 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul15 (14 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl36a (4 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl31 (7 kDa, Protein from Escherichia coli)
Api88 (Complex from Apis mellifera)
Large ribosomal subunit protein bl19 (13 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl28 (8 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl9 (15 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl35 (7 kDa, Protein from Escherichia coli)
23s ribosomal rna (941 kDa, RNA from Escherichia coli)
Large ribosomal subunit protein ul5 (20 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul4 (22 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul14 (13 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul22 (12 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul6 (18 kDa, Protein from Escherichia coli)

[Show more]

EMD-19428

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Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II

Release date: May 22, 2024
Resolution: 2.44 Å
EM Method: Single-particle
Fitted PDBs: 8rq0
Q-score: 0.557

Lauer SM, Reepmeyer M, Berendes O, Klepacki D, Gasse J, Gabrielli S, Grubmuller H, Bock LV, Krizsan A, Nikolay R, Spahn CMT, Hoffmann R

Nat Commun (2024) 15 pp. 3945-3945 [ Pubmed: 38730238 DOI: doi:10.1038/s41467-024-48027-4 ]

Sample:

Large ribosomal subunit protein ul23 (10 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul29 (7 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl31 (7 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul22 (12 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul13 (16 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul2 (29 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul5 (20 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl35 (7 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl33 (5 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul16 (15 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl32 (6 kDa, Protein from Escherichia coli)
5s ribosomal rna (38 kDa, RNA from Escherichia coli)
Large ribosomal subunit (Complex from Escherichia coli)
Large ribosomal subunit protein bl28 (8 kDa, Protein from Escherichia coli)
Api88 in complex with the large ribosomal subunit - conformation ii (Complex)
Large ribosomal subunit protein ul18 (12 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl17 (13 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl36a (4 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul4 (22 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul6 (18 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul14 (13 kDa, Protein from Escherichia coli)
Apidaecins type 88 (2 kDa, Protein from Apis mellifera)
Large ribosomal subunit protein ul3 (22 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl20 (13 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul15 (14 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul24 (11 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl21 (11 kDa, Protein from Escherichia coli)
23s ribosomal rna (941 kDa, RNA from Escherichia coli)
Large ribosomal subunit protein bl9 (15 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul30 (6 kDa, Protein from Escherichia coli)
Api88 (Complex from Apis mellifera)
Large ribosomal subunit protein bl27 (8 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl19 (13 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl34 (5 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl25 (10 kDa, Protein from Escherichia coli)

[Show more]

EMD-19429

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Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III

Release date: May 22, 2024
Resolution: 2.44 Å
EM Method: Single-particle
Fitted PDBs: 8rq2

Lauer SM, Reepmeyer M, Berendes O, Klepacki D, Gasse J, Gabrielli S, Grubmuller H, Bock LV, Krizsan A, Nikolay R, Spahn CMT, Hoffmann R

Nat Commun (2024) 15 pp. 3945-3945 [ Pubmed: 38730238 DOI: doi:10.1038/s41467-024-48027-4 ]

Sample:

Large ribosomal subunit protein ul23 (10 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul29 (7 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl31 (7 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul22 (12 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul13 (16 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul2 (29 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul5 (20 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl35 (7 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl33 (5 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul16 (15 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl32 (6 kDa, Protein from Escherichia coli)
5s ribosomal rna (38 kDa, RNA from Escherichia coli)
Api88 in complex with the large ribosomal subunit - conformation iii (Complex)
Large ribosomal subunit (Complex from Escherichia coli)
Large ribosomal subunit protein bl28 (8 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul18 (12 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl17 (13 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl36a (4 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul4 (22 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul6 (18 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul14 (13 kDa, Protein from Escherichia coli)
Apidaecins type 88 (2 kDa, Protein from Apis mellifera)
Large ribosomal subunit protein ul3 (22 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl20 (13 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul15 (14 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul24 (11 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl21 (11 kDa, Protein from Escherichia coli)
23s ribosomal rna (941 kDa, RNA from Escherichia coli)
Large ribosomal subunit protein bl9 (15 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein ul30 (6 kDa, Protein from Escherichia coli)
Api88 (Complex from Apis mellifera)
Large ribosomal subunit protein bl27 (8 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl19 (13 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl34 (5 kDa, Protein from Escherichia coli)
Large ribosomal subunit protein bl25 (10 kDa, Protein from Escherichia coli)

[Show more]

Sort by: Download

Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [4]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: