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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"23S Ribosomal RNA" AND release_date:[2023-01-01T00:00:00Z TO 2023-12-31T23:59:59Z] AND author_name:"Devarkar SC"

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EMD-26959

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Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Release date: March 22, 2023
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 8crx
Q-score: 0.519

Lomakin IB, Devarkar SC, Patel S, Grada A, Bunick CG

Nucleic Acids Res (2023) 51 pp. 2915-2930 [ Pubmed: 36864821 DOI: doi:10.1093/nar/gkad103 ]

Sample:

30s ribosomal protein s12 (13 kDa, Protein from Cutibacterium acnes)
30s ribosomal protein s6 (11 kDa, Protein from Cutibacterium acnes)
30s ribosomal protein s4 (23 kDa, Protein from Cutibacterium acnes)
30s ribosomal protein s15 (10 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l13 (16 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l22 (16 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l5 (23 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l30 (6 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l23 (11 kDa, Protein from Cutibacterium acnes)
30s ribosomal protein s3 (29 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l29 (8 kDa, Protein from Cutibacterium acnes)
30s ribosomal protein s8 (14 kDa, Protein from Cutibacterium acnes)
30s ribosomal protein s11 (14 kDa, Protein from Cutibacterium acnes)
30s ribosomal protein s7 (17 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l4 (32 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l14 (13 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l28 (6 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l16 (15 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l21 (11 kDa, Protein from Cutibacterium acnes)
Zinc ion (65 Da, Ligand)
50s ribosomal protein l31 (7 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l3 (23 kDa, Protein from Cutibacterium acnes)
70s ribosome with mrna, p-site trna and sarecycline bound (Complex from Cutibacterium acnes)
30s ribosomal protein s13 (14 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l15 (15 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein bl37 (2 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l32 (6 kDa, Protein from Cutibacterium acnes)
30s ribosomal protein s17 (10 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l24 (13 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l2 (30 kDa, Protein from Cutibacterium acnes)
Water (18 Da, Ligand)
50s ribosomal protein l34 (5 kDa, Protein from Cutibacterium acnes)
32mf mrna (7 kDa, RNA from Escherichia coli)
50s ribosomal protein l17 (20 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l18 (13 kDa, Protein from Cutibacterium acnes)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l33 (6 kDa, Protein from Cutibacterium acnes)
5s ribosomal rna (38 kDa, RNA from Cutibacterium acnes)
50s ribosomal protein l35 (7 kDa, Protein from Cutibacterium acnes)
Sarecycline (487 Da, Ligand)
30s ribosomal protein s19 (10 kDa, Protein from Cutibacterium acnes)
30s ribosomal protein s5 (22 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l19 (13 kDa, Protein from Cutibacterium acnes)
30s ribosomal protein s10 (11 kDa, Protein from Cutibacterium acnes)
23s ribosomal rna (1 MDa, RNA from Cutibacterium acnes)
30s ribosomal protein s2 (31 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l20 (13 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l25 (22 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l6 (19 kDa, Protein from Cutibacterium acnes)
30s ribosomal protein s18 (8 kDa, Protein from Cutibacterium acnes)
30s ribosomal protein s20 (9 kDa, Protein from Cutibacterium acnes)
30s ribosomal protein s16 (15 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l27 (9 kDa, Protein from Cutibacterium acnes)
P-site initiator trna (24 kDa, RNA from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Cutibacterium acnes)
Rna (1537-mer) (498 kDa, RNA from Cutibacterium acnes)
30s ribosomal protein s14 type z (6 kDa, Protein from Cutibacterium acnes)
30s ribosomal protein s9 (18 kDa, Protein from Cutibacterium acnes)
30s ribosomal protein bs22 (4 kDa, Protein from Cutibacterium acnes)

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EMD-27009

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Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Release date: March 15, 2023
Resolution: 2.66 Å
EM Method: Single-particle
Fitted PDBs: 8cvm
Q-score: 0.565

Lomakin IB, Devarkar SC, Patel S, Grada A, Bunick CG

Nucleic Acids Res (2023) 51 pp. 2915-2930 [ DOI: doi:10.1093/nar/gkad103 Pubmed: 36864821 ]

Sample:

50s subunit from 70s ribosome with mrna, p-site trna and sarecycline bound (Complex from Cutibacterium acnes)
50s ribosomal protein l20 (13 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l35 (7 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l24 (13 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l19 (13 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l13 (16 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l23 (11 kDa, Protein from Cutibacterium acnes)
Sarecycline (487 Da, Ligand)
50s ribosomal protein l34 (5 kDa, Protein from Cutibacterium acnes)
Initiator fmet rna (24 kDa, RNA from Escherichia coli)
50s ribosomal protein l27 (9 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein bl37 (2 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l16 (15 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l17 (20 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l36 (4 kDa, Protein from Cutibacterium acnes)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l29 (8 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l31 (7 kDa, Protein from Cutibacterium acnes)
5s ribosomal rna (38 kDa, RNA from Cutibacterium acnes)
50s ribosomal protein l21 (11 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l22 (16 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l5 (23 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l14 (13 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l25 (22 kDa, Protein from Cutibacterium acnes)
23s ribosomal rna (1 MDa, RNA from Cutibacterium acnes)
50s ribosomal protein l32 (6 kDa, Protein from Cutibacterium acnes)
Zinc ion (65 Da, Ligand)
50s ribosomal protein l4 (32 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l30 (6 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l18 (13 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l28 (6 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l6 (19 kDa, Protein from Cutibacterium acnes)
Water (18 Da, Ligand)
50s ribosomal protein l33 (6 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l3 (23 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l2 (30 kDa, Protein from Cutibacterium acnes)
50s ribosomal protein l15 (15 kDa, Protein from Cutibacterium acnes)

[Show more]

Sort by: Download

Showing 1 - 2 of 2. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [2]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: