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sample_name:"30S ribosomal protein S14" AND author_name:"Matzov D" AND xref_links:"drugbank"
Cryo-EM Structure of T. kodakarensis 70S ribosome
Release date: July 29, 2020
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 6skf
Q-score: 0.597
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 6skf
Q-score: 0.597
Sas-Chen A, Thomas JM, Matzov D, Taoka M, Nance KD, Nir R, Bryson KM, Shachar R, Liman GLS, Burkhart BW, Gamage ST, Nobe Y, Briney CA, Levy MJ, Fuchs RT, Robb GB, Hartmann J, Sharma S, Lin Q, Florens L, Washburn MP, Isobe T, Santangelo TJ, Shalev-Benami M, Meier JL, Schwartz S
Nature (2020) 583 pp. 638-643 [ DOI: doi:10.1038/s41586-020-2418-2 Pubmed: 32555463 ]
Sample:
- 50s ribosomal protein l39e (6 kDa, Protein from Thermococcus kodakarensis)
- 23s rrna (990 kDa, RNA from Thermococcus kodakarensis)
- 30s ribosomal protein s12 (16 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s24e (11 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l32e (14 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l2 (26 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l5 (21 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s19e (17 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l34e (10 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s19 (15 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l18ae (9 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l21e (11 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s4e (27 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l10e (21 kDa, Protein from Thermococcus kodakarensis)
- 16s rrna (488 kDa, RNA from Thermococcus kodakarensis)
- 30s ribosomal protein s8 (14 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s9 (15 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s7 (24 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s2 (23 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s11 (15 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s6e (13 kDa, Protein from Thermococcus kodakarensis)
- 5s rrna (40 kDa, RNA from Thermococcus kodakarensis)
- 30s ribosomal protein s3ae (23 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l24 (14 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s28e (7 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l15 (16 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l44e (11 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s15 (17 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l31e (10 kDa, Protein from Thermococcus kodakarensis)
- Lsu ribosomal protein l41e (5 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l13 (16 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s17 (13 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l15e (22 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l7ae (13 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s17e (8 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s5 (26 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l18 (22 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l24e (8 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l30e (10 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l3 (39 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s4 (21 kDa, Protein from Thermococcus kodakarensis)
- Predicted zinc-ribbon rna-binding protein involved in translation (7 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l23 (9 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l19e (17 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l40e (5 kDa, Protein from Thermococcus kodakarensis)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l14e (8 kDa, Protein from Thermococcus kodakarensis)
- 70s ribosome from thermococcus kodakarensis (Complex from Thermococcus kodakarensis)
- 50s ribosomal protein l18e (13 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l22 (17 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s3 (23 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l30 (17 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s8e (14 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l14 (15 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s27e (7 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s10 (11 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l6 (20 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s13 (17 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l4 (28 kDa, Protein from Thermococcus kodakarensis)
- Water (18 Da, Ligand)
- 50s ribosomal protein l37e (7 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l29 (7 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l37ae (9 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Thermococcus kodakarensis)
Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain
Release date: July 29, 2020
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 6skg
Q-score: 0.614
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 6skg
Q-score: 0.614
Sas-Chen A, Thomas JM, Matzov D, Taoka M, Nance KD, Nir R, Bryson KM, Shachar R, Liman GLS, Burkhart BW, Gamage ST, Nobe Y, Briney CA, Levy MJ, Fuchs RT, Robb GB, Hartmann J, Sharma S, Lin Q, Florens L, Washburn MP, Isobe T, Santangelo TJ, Shalev-Benami M, Meier JL, Schwartz S
Nature (2020) 583 pp. 638-643 [ DOI: doi:10.1038/s41586-020-2418-2 Pubmed: 32555463 ]
Sample:
- 50s ribosomal protein l15e (22 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s5 (26 kDa, Protein from Thermococcus kodakarensis)
- 70s ribosome from thermococcus kodakarensis (Complex from Thermococcus kodakarensis)
- 30s ribosomal protein s8e (14 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l13 (16 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s2 (23 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s24e (11 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l40e (5 kDa, Protein from Thermococcus kodakarensis)
- Nucleic acid-binding protein, containing c2h2 zinc-finger (5 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s11 (15 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l15 (16 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l39e (6 kDa, Protein from Thermococcus kodakarensis)
- Lsu ribosomal protein l41e (5 kDa, Protein from Thermococcus kodakarensis)
- Unknown ribosomal protein (2 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s6e (13 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s15 (17 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l18 (22 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l18ae (9 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s17 (13 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l2 (26 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l3 (39 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l6 (20 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s12 (16 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s27e (7 kDa, Protein from Thermococcus kodakarensis)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l31e (10 kDa, Protein from Thermococcus kodakarensis)
- 5s ribosomal rna (40 kDa, RNA from Thermococcus kodakarensis)
- 50s ribosomal protein l18e (13 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l14e (8 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l19e (17 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l24e (8 kDa, Protein from Thermococcus kodakarensis)
- Ribosomal protein el35a (11 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l32e (14 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l4 (28 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l30e (10 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s19e (17 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l14 (15 kDa, Protein from Thermococcus kodakarensis)
- Water (18 Da, Ligand)
- 30s ribosomal protein s3 (23 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s17e (8 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l44e (11 kDa, Protein from Thermococcus kodakarensis)
- 16s ribosomal rna (487 kDa, RNA from Thermococcus kodakarensis)
- 30s ribosomal protein s8 (14 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s28e (7 kDa, Protein from Thermococcus kodakarensis)
- Predicted zinc-ribbon rna-binding protein involved in translation (7 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l22 (17 kDa, Protein from Thermococcus kodakarensis)
- 23s ribosomal rna (987 kDa, RNA from Thermococcus kodakarensis)
- 50s ribosomal protein l24 (14 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s13 (17 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s4 (21 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l30 (17 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l37e (7 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s9 (15 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l23 (9 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l21e (11 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l5 (21 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s3ae (23 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l37ae (9 kDa, Protein from Thermococcus kodakarensis)
- Predicted exosome subunit, upf0023 family (26 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s10 (11 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s7 (24 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l10e (21 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l7ae (13 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l34e (10 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s4e (27 kDa, Protein from Thermococcus kodakarensis)
- 30s ribosomal protein s19 (15 kDa, Protein from Thermococcus kodakarensis)
- 50s ribosomal protein l29 (7 kDa, Protein from Thermococcus kodakarensis)
Cryo-EM Structure of T. kodakarensis 70S ribosome
Release date: July 29, 2020
Resolution: 2.55 Å
EM Method: Single-particle
Fitted PDBs: 6th6
Q-score: 0.622
Resolution: 2.55 Å
EM Method: Single-particle
Fitted PDBs: 6th6
Q-score: 0.622
Sas-Chen A, Thomas JM, Matzov D, Taoka M, Nance KD, Nir R, Bryson KM, Shachar R, Liman GLS, Burkhart BW, Gamage ST, Nobe Y, Briney CA, Levy MJ, Fuchs RT, Robb GB, Hartmann J, Sharma S, Lin Q, Florens L, Washburn MP, Isobe T, Santangelo TJ, Shalev-Benami M, Meier JL, Schwartz S
Nature (2020) 583 pp. 638-643 [ DOI: doi:10.1038/s41586-020-2418-2 Pubmed: 32555463 ]
Sample:
- 50s ribosomal protein l30e (10 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s7 (24 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l32e (14 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l7ae (13 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s2 (23 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l24e (8 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l6 (20 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s28e (7 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l37ae (9 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s24e (11 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s9 (15 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s3ae (23 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s19 (15 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l31e (10 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l37e (7 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l39e (6 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s4 (21 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s11 (15 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s12 (16 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s13 (17 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s27e (7 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l21e (11 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l40e (5 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 16s ribosomal rna (486 kDa, RNA from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s17 (13 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l22 (17 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l19e (17 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 70s ribosome from thermococcus kodakarensis (Complex from Thermococcus kodakarensis)
- 50s ribosomal protein l4 (28 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s6e (13 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s5 (26 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l2 (26 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l29 (7 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s10 (11 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- Lsu ribosomal protein l41e (5 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s17e (8 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l3 (39 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s4e (27 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l14e (8 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l18ae (9 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l24 (14 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l15e (22 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s8 (14 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- Predicted zinc-ribbon rna-binding protein involved in translation (7 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s14 type z (6 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l23 (9 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s3 (23 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l15 (16 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l10e (21 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s15 (17 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l5 (21 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- Water (18 Da, Ligand)
- 50s ribosomal protein l18 (22 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 5s ribosomal rna (40 kDa, RNA from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l30 (17 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l34e (10 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l44e (11 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l18e (13 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s19e (17 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l14 (15 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 30s ribosomal protein s8e (14 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 23s ribosomal rna (987 kDa, RNA from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
- 50s ribosomal protein l13 (16 kDa, Protein from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1))
Pseudomonas aeruginosa 70s ribosome from a clinical isolate
Release date: Oct. 16, 2019
Resolution: 3.34 Å
EM Method: Single-particle
Fitted PDBs: 6spg
Q-score: 0.468
Resolution: 3.34 Å
EM Method: Single-particle
Fitted PDBs: 6spg
Q-score: 0.468
Halfon Y, Jimenez-Fernandez A, La Rosa R, Espinosa Portero R, Krogh Johansen H, Matzov D, Eyal Z, Bashan A, Zimmerman E, Belousoff M, Molin S, Yonath A
PNAS (2019) 116 pp. 22275-22281 [ DOI: doi:10.1073/pnas.1909831116 Pubmed: 31611393 ]
Sample:
- Pseudomonas aeruginosa 70s ribosome from a clinical isolate (Complex from Pseudomonas aeruginos)
- 50s ribosomal protein l4 (21 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l31 (3 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l33 (5 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l32 (6 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l2 (29 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s2 (26 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l11 (14 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s21 (7 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s5 (16 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s8 (14 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s17 (8 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l17 (13 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s10 (10 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l21 (11 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l9 (8 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l23 (10 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s20 (9 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s7 (17 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s19 (9 kDa, Protein from Pseudomonas aeruginosa)
- Ribosomal protein ul29 (6 kDa, Protein from Pseudomonas aeruginosa)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l14 (13 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l6 (18 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l27 (8 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l25 (20 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l15 (15 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l5 (19 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l34 (5 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l36 (4 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l19 (12 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s11 (12 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s16 (8 kDa, Protein from Pseudomonas aeruginosa)
- 5s ribosomal rna (37 kDa, RNA from Pseudomonas aeruginosa)
- 50s ribosomal protein l13 (15 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l22 (11 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s4 (23 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s14 (11 kDa, Protein from Pseudomonas aeruginosa)
- 16s ribosomal rna (494 kDa, RNA from Pseudomonas aeruginosa)
- 30s ribosomal protein s15 (9 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s6 (12 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s18 (8 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l20 (13 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l35 (7 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s12 (13 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l24 (11 kDa, Protein from Pseudomonas aeruginosa)
- 23s ribosomal rna (935 kDa, RNA from Pseudomonas aeruginosa)
- 30s ribosomal protein s9 (14 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l18 (12 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l16 (15 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s13 (12 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l3 (22 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l30 (6 kDa, Protein from Pseudomonas aeruginosa)
- 30s ribosomal protein s3 (23 kDa, Protein from Pseudomonas aeruginosa)
- 50s ribosomal protein l28 (8 kDa, Protein from Pseudomonas aeruginosa)
Release date: Aug. 21, 2019
Resolution: 2.425 Å
EM Method: Single-particle
Fitted PDBs: 6s0x
Q-score: 0.395
Resolution: 2.425 Å
EM Method: Single-particle
Fitted PDBs: 6s0x
Q-score: 0.395
Halfon Y, Matzov D, Eyal Z, Bashan A, Zimmerman E, Kjeldgaard J, Ingmer H, Yonath A
Sci Rep (2019) 9 pp. 11460-11460 [ Pubmed: 31391518 DOI: doi:10.1038/s41598-019-48019-1 ]
Sample:
- 30s ribosomal protein s21 (6 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l31 type b (6 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s20 (8 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s5 (16 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s16 (9 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s4 (22 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l27 (8 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l29 (7 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l18 (12 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s17 (9 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus)
- Erythromycin a (733 Da, Ligand)
- Erythromycin resistant staphylococcus aureus 70s ribosome (delta r88 a89 ul22) in complex with erythromycin. (Complex from Staphylococcus aureus)
- 16s ribosomal rna (498 kDa, RNA from Staphylococcus aureus)
- 30s ribosomal protein s11 (12 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s19 (9 kDa, Protein from Staphylococcus aureus)
- Ribosome hibernation promoting factor (18 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l16 (15 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l33 (5 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s2 (25 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l2 (29 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l32 (5 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l28 (5 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s10 (11 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s3 (22 kDa, Protein from Staphylococcus aureus)
- 23s ribosomal rna (940 kDa, RNA from Staphylococcus aureus)
- 50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s18 (6 kDa, Protein from Staphylococcus aureus)
- 5s ribosomal rna (36 kDa, RNA from Staphylococcus aureus)
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l25 (10 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l5 (19 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s13 (11 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus)
2.9S structure of the 70S ribosome composing the S. aureus 100S complex
Release date: Oct. 4, 2017
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 5ngm
Q-score: 0.452
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 5ngm
Q-score: 0.452
Matzov D, Aibara S, Basu A, Zimmerman E, Bashan A, Yap MF, Amunts A, Yonath AE
Nat Commun (2017) 8 pp. 723-723 [ Pubmed: 28959035 DOI: doi:10.1038/s41467-017-00753-8 ]
Sample:
- 30s ribosomal protein s16 (10 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l2 (30 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s17 (10 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus)
- 30s subunit (Complex from Staphylococcus aureus)
- 30s ribosomal proteins (Complex from Staphylococcus aureus)
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus)
- 70s ribosome of the s. aureus 100s complex (Complex from Staphylococcus aureus)
- 50s ribosomal protein l5 (20 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s3 (24 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s20 (9 kDa, Protein from Staphylococcus aureus)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus)
- 23s and 5s rrna (Complex from Staphylococcus aureus)
- 50s ribosomal protein l25 (23 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s19 (10 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s5 (17 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus)
- 16s ribosomal rna (502 kDa, RNA from Staphylococcus aureus)
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l16 (16 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s18 (9 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s11 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l33 (5 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal proteins (Complex from Staphylococcus aureus)
- 50s ribosomal protein l27 (10 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s10 (11 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus)
- Ribosome hibernation promoting factor (22 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l29 (8 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus)
- 23s ribosomal rna (946 kDa, RNA from Staphylococcus aureus)
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus)
- 50s subunit (Complex from Staphylococcus aureus)
- 50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s21 (6 kDa, Protein from Staphylococcus aureus)
- 5s ribosomal rna (36 kDa, RNA from Staphylococcus aureus)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s4 (23 kDa, Protein from Staphylococcus aureus)
- 16s rrna (Complex from Staphylococcus aureus)
Methicillin sensitive Staphylococcus aureus 70S ribosome
Release date: May 24, 2017
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 5tcu
Q-score: 0.431
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 5tcu
Q-score: 0.431
Belousoff MJ, Eyal Z, Radjainia M, Ahmed T, Bamert RS, Matzov D, Bashan A, Zimmerman E, Mishra S, Cameron D, Elmlund H, Peleg AY, Bhushan S, Lithgow T, Yonath A
mBio (2017) 8 [ Pubmed: 28487427 DOI: doi:10.1128/mBio.00395-17 ]
Sample:
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s11 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s13 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s18 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Mrna (4 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l16 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s20 (8 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Paromomycin (615 Da, Ligand)
- 5s rrna chain (36 kDa, RNA from Staphylococcus aureus (strain NCTC 8325))
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l25 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s10 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l29 (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l33 1 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s19 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 16s rrna (502 kDa, RNA from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- P-site trna chain (24 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l2 (29 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l35 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l19 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l5 (18 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s4 (22 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s16 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Methicillin sensitive staphylococcus aureus 70s ribosome (atcc 35556) (Complex from Staphylococcus aureus)
- 23s rrna (946 kDa, RNA from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l31 type b (8 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s3 (22 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- E-site trna chain (24 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s5 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l18 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l27 (8 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l32 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s17 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))