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sample_name:"30S ribosomal protein S14" AND microscope_name:"FEI TITAN KRIOS" AND author_orcid:"0000-0001-5544-0597"
70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
Release date: Jan. 27, 2021
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6yef
Q-score: 0.569
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6yef
Q-score: 0.569
Golubev A, Fatkhullin B, Khusainov I, Jenner L, Gabdulkhakov A, Validov S, Yusupova G, Yusupov M, Usachev K
FEBS Lett (2020) 594 pp. 3551-3567 [ Pubmed: 32852796 DOI: doi:10.1002/1873-3468.13915 ]
Sample:
- 30s ribosomal protein s18 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 70s ribosome (Complex)
- 50s ribosomal protein l33 2 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- E-site trna (Cellular component from Escherichia coli DH5[alpha])
- 23s rrna (946 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 23s and 5s rrna, 50s ribosomal subunit (Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l27 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s5 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- P-site trna (25 kDa, RNA from Escherichia coli DH5[alpha])
- 50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l5 (20 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s16 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Mrna (Complex from synthetic construct)
- 50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 16s rrna, 30s ribosomal subunit (Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s11 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 16s rrna (503 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l25 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s4 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s19 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l29 (8 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l16 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Ribosomal protein us10 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s17 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 5s rrna (36 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s3 (24 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s20 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s14 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Mrna (9 kDa, RNA from synthetic construct)
- 50s ribosomal protein l2 (30 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
T. thermophilus hibernating 100S ribosome (ice)
Release date: Oct. 24, 2018
Resolution: 4.57 Å
EM Method: Single-particle
Fitted PDBs: 6gzx
Q-score: 0.282
Resolution: 4.57 Å
EM Method: Single-particle
Fitted PDBs: 6gzx
Q-score: 0.282
Flygaard RK, Boegholm N, Yusupov M, Jenner LB
Nat Commun (2018) 9 pp. 4179-4179 [ DOI: doi:10.1038/s41467-018-06724-x Pubmed: 30301898 ]
Sample:
- 50s ribosomal protein l25 (20 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l29 (8 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s7 (17 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l14 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l4 (23 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l17 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l22 (12 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l19 (16 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s12 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s17 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 23s ribosomal rna (947 kDa, RNA from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s15 (10 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l35 (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l16 (15 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s3 (22 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l13 (15 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- Thermus thermophilus 100s hibernating ribosome (ice) (2 MDa, Complex)
- Ribosome (Complex from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l20 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l28 (10 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s5 (16 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s4 (24 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l36 (4 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s9 (14 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l15 (16 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l23 (10 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- Ribosome hibernation promoting factor (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l18 (12 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s19 (8 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l2 (29 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s11 (12 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l3 (22 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l34 (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s8 (15 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- Ribosome hibernation promoting factor (Complex from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l30 (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein thx (3 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s2 (27 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l6 (18 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l27 (8 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l21 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l5 (20 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l24 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l32 (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s14 type z (7 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s18 (7 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s20 (10 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l33 (5 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 16s ribosomal rna (489 kDa, RNA from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 5s ribosomal rna (39 kDa, RNA from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s16 (9 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l31 (7 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s6 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s13 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l9 (5 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- Ribosome hibernation promoting factor (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s10 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
T. thermophilus hibernating 100S ribosome (amc)
Release date: Oct. 24, 2018
Resolution: 4.13 Å
EM Method: Single-particle
Fitted PDBs: 6gzz
Q-score: 0.317
Resolution: 4.13 Å
EM Method: Single-particle
Fitted PDBs: 6gzz
Q-score: 0.317
Flygaard RK, Boegholm N, Yusupov M, Jenner LB
Nat Commun (2018) 9 pp. 4179-4179 [ DOI: doi:10.1038/s41467-018-06724-x Pubmed: 30301898 ]
Sample:
- 50s ribosomal protein l25 (20 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l29 (8 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l4 (23 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s18 (7 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l22 (12 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l3 (22 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l19 (16 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s12 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- Ribosome hibernation promoting factor (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l35 (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l16 (15 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s3 (22 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l13 (15 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- Thermus thermophilus hibernating 100s ribosome (amc) (2 MDa, Complex)
- 50s ribosomal protein l20 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 23s ribosomal rna (947 kDa, RNA from Thermus thermophilus HB8)
- 50s ribosomal protein l28 (10 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s4 (24 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l36 (4 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l2 (29 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l9 (5 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s9 (14 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l15 (16 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l23 (10 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l17 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l5 (20 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s11 (12 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 5s ribosomal rna (39 kDa, RNA from Thermus thermophilus HB8)
- 30s ribosomal protein s8 (15 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- Ribosome hibernation promoting factor (Complex from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l30 (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 100s ribosome (Complex from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein thx (3 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- Ribosome hibernation promoting factor (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l34 (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s2 (27 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 16s ribosomal rna (489 kDa, RNA from Thermus thermophilus HB8)
- 50s ribosomal protein l6 (18 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l14 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l27 (8 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s10 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l21 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s15 (10 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l32 (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s14 type z (7 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l18 (12 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l33 (5 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s7 (17 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s13 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s16 (9 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l31 (7 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s6 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s17 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s5 (16 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s20 (10 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s19 (8 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l24 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
Hibernating ribosome from Staphylococcus aureus (Unrotated state)
Release date: June 28, 2017
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 5nd8
Q-score: 0.384
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 5nd8
Q-score: 0.384
Khusainov I, Vicens Q, Ayupov R, Usachev K, Myasnikov A, Simonetti A, Validov S, Kieffer B, Yusupova G, Yusupov M, Hashem Y
EMBO J (2017) 36 pp. 2073-2087 [ DOI: doi:10.15252/embj.201696105 Pubmed: 28645916 ]
Sample:
- 30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s20 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s18 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s4 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l5 (20 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l29 (8 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l2 (30 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 23s ribosomal rna (945 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Ribosome hibernation promotion factor (Complex from Staphylococcus aureus (strain NCTC 8325))
- 5s ribosomal rna (36 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l33 2 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 16s ribosomal rna (500 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s19 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s3 (24 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s21 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l16 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s5 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s16 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l31 type b (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Hibernating ribosome from staphylococcus aureus (unrotated state) (2 MDa, Complex)
- 50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Hibernating ribosome from staphylococcus aureus (unrotated state) (Complex from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l27 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s17 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Ribosome hibernation promotion factor (22 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l25 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s10 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s11 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Hibernating ribosome from Staphylococcus aureus (Rotated state)
Release date: June 28, 2017
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 5nd9
Q-score: 0.386
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 5nd9
Q-score: 0.386
Khusainov I, Vicens Q, Ayupov R, Usachev K, Myasnikov A, Simonetti A, Validov S, Kieffer B, Yusupova G, Yusupov M, Hashem Y
EMBO J (2017) 36 pp. 2073-2087 [ Pubmed: 28645916 DOI: doi:10.15252/embj.201696105 ]
Sample:
- 23s ribosomal rna (946 kDa, RNA from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s18 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Hibernating ribosome from staphylococcus aureus (unrotated state) (Complex from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l33 2 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l27 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s5 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l5 (20 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s16 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Ribosome hibernation promotion factor (Complex from Staphylococcus aureus (strain NCTC 8325))
- 16s ribosomal rna (503 kDa, RNA from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s21 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l31 type b (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s11 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l25 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s4 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s19 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 5s ribosomal rna (36 kDa, RNA from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l29 (8 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l16 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s17 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s3 (24 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s20 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s10 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Hibernating ribosome from staphylococcus aureus (unrotated state) (2 MDa, Complex)
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l2 (30 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Ribosome hibernation promotion factor (22 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
70S ribosome from Staphylococcus aureus
Release date: Dec. 28, 2016
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5li0
Q-score: 0.405
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5li0
Q-score: 0.405
Khusainov I, Vicens Q, Bochler A, Grosse F, Myasnikov A, Menetret JF, Chicher J, Marzi S, Romby P, Yusupova G, Yusupov M, Hashem Y
Nucleic Acids Res (2016) 44 pp. 10491-10504 [ Pubmed: 27906650 DOI: doi:10.1093/nar/gkw933 ]
Sample:
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s18 (8 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l6 (18 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l2 (29 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Oxygen atom (15 Da, Ligand)
- 50s ribosomal protein l33 2 (4 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 23s ribosomal rna (945 kDa, RNA from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s16 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l31 type b (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s10 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 16s ribosomal rna (500 kDa, RNA from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l15 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l25 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l35 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s4 (22 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 5s ribosomal rna (36 kDa, RNA from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Water (18 Da, Ligand)
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s11 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l29 (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l16 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l5 (18 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s3 (24 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l27 (8 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s17 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l28 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l24 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s5 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l4 (21 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s19 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s20 (8 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 50s ribosomal protein l19 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 70s ribosome from staphylococcus aureus (Complex from Staphylococcus aureus (strain NCTC 8325))