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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"30S ribosomal protein S14" AND microscope_name:"FEI TITAN KRIOS" AND author_orcid:"0000-0002-5794-4841"

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EMD-13958

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Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Release date: June 22, 2022
Resolution: 5.7 Å
EM Method: Single-particle
Fitted PDBs: 7qgr
Q-score: 0.112

Saito K, Kratzat H, Campbell A, Buschauer R, Burroughs AM, Berninghausen O, Aravind L, Green R, Beckmann R, Buskirk AR

Nature (2022) 603 pp. 503-508 [ DOI: doi:10.1038/s41586-022-04416-7 Pubmed: 35264790 ]

Sample:

30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s3 (24 kDa, Protein from Escherichia coli)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
Upf0115 protein yfcn (20 kDa, Protein from Escherichia coli)
30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
23s rrna (941 kDa, RNA from Escherichia coli)
16s rrna (498 kDa, RNA from Escherichia coli)
50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
30s ribosomal protein s6, non-modified isoform (15 kDa, Protein from Escherichia coli)
Potassium ion (39 Da, Ligand)
50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l1 (23 kDa, Protein from Escherichia coli)
P-site trna (24 kDa, RNA from Escherichia coli)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
Water (18 Da, Ligand)
A-site trna (23 kDa, RNA from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
Mrna (221 kDa, RNA from Vibrio alginolyticus)
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
30s ribosomal protein s1 (61 kDa, Protein from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
5s rrna (38 kDa, RNA from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (6 kDa, Protein from Escherichia coli)
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
Collided ribosome of the smrb-bound disome structure (Complex from Escherichia coli)
50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)

[Show more]

EMD-13956

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Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

Release date: April 27, 2022
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 7qgn
Q-score: 0.181

Saito K, Kratzat H, Campbell A, Buschauer R, Burroughs AM, Berninghausen O, Aravind L, Green R, Beckmann R, Buskirk AR

Nature (2022) 603 pp. 503-508 [ DOI: doi:10.1038/s41586-022-04416-7 Pubmed: 35264790 ]

Sample:

Potassium ion (39 Da, Ligand)
30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
23s rrna (941 kDa, RNA from Escherichia coli)
30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
30s ribosomal protein s3 (24 kDa, Protein from Escherichia coli)
50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
Ribosomal protein s7 (17 kDa, Protein from Escherichia coli)
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (6 kDa, Protein from Escherichia coli)
30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
P-site trna (24 kDa, RNA from Escherichia coli)
50s ribosomal protein l1 (23 kDa, Protein from Escherichia coli)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
Vemp nascent chain (20 kDa, Protein from Vibrio alginolyticus)
30s ribosomal protein s21 (10 kDa, Protein from Escherichia coli)
16s rrna (498 kDa, RNA from Escherichia coli)
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
Ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
5s rrna (38 kDa, RNA from Escherichia coli)
30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
Stalled/leading ribosome of the smrb-bound disome structure (Complex from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
Upf0115 protein yfcn (20 kDa, Protein from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
Water (18 Da, Ligand)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli UMEA 3162-1)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
A-site trna (23 kDa, RNA from Escherichia coli)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)

[Show more]

EMD-13952

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Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Release date: March 16, 2022
Resolution: 3.97 Å
EM Method: Single-particle
Fitted PDBs: 7qg8
Q-score: 0.145

Saito K, Kratzat H, Campbell A, Buschauer R, Burroughs AM, Berninghausen O, Aravind L, Green R, Beckmann R, Buskirk AR

Nature (2022) 603 pp. 503-508 [ DOI: doi:10.1038/s41586-022-04416-7 Pubmed: 35264790 ]

Sample:

50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli K-12)
P-site trna (24 kDa, RNA from Escherichia coli K-12)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s7 (17 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli K-12)
16s rrna (498 kDa, RNA from Escherichia coli K-12)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli K-12)
Vemp nascent chain (20 kDa, Protein from Vibrio alginolyticus)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s21 (10 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli K-12)
Stalled/leading ribosome of the collided disome structure (Complex)
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l36 (6 kDa, Protein from Escherichia coli K-12)
23s rrna (941 kDa, RNA from Escherichia coli K-12)
30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli K-12)
Potassium ion (39 Da, Ligand)
50s ribosomal protein l1 (23 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s6, non-modified isoform (15 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli K-12)
Water (18 Da, Ligand)
50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli K-12)
Magnesium ion (24 Da, Ligand)
30s ribosomal protein s3 (24 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli K-12)
A-site trna (23 kDa, RNA from Escherichia coli K-12)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli K-12)
5s rrna (38 kDa, RNA from Escherichia coli K-12)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli K-12)

[Show more]

EMD-13955

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Structure of the E. coli disome - collided 70S ribosome

Release date: March 16, 2022
Resolution: 4.48 Å
EM Method: Single-particle
Fitted PDBs: 7qgh
Q-score: 0.126

Saito K, Kratzat H, Campbell A, Buschauer R, Burroughs AM, Berninghausen O, Aravind L, Green R, Beckmann R, Buskirk AR

Nature (2022) 603 pp. 503-508 [ DOI: doi:10.1038/s41586-022-04416-7 Pubmed: 35264790 ]

Sample:

30s ribosomal protein s1 (61 kDa, Protein from Escherichia coli K-12)
P-site trna (24 kDa, RNA from Escherichia coli K-12)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli K-12)
16s rrna (498 kDa, RNA from Escherichia coli K-12)
30s ribosomal protein s2 (27 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s16 (11 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s21 (10 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli K-12)
23s rrna (941 kDa, RNA from Escherichia coli K-12)
50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l36 (6 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli K-12)
Potassium ion (39 Da, Ligand)
30s ribosomal protein s10 (12 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l1 (23 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli K-12)
Mrna (221 kDa, RNA from Escherichia coli K-12)
50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s6, non-modified isoform (15 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli K-12)
Water (18 Da, Ligand)
50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli K-12)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli K-12)
Collided ribosome of the disome structure (Complex from Escherichia coli K-12)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l2 (30 kDa, Protein from Escherichia coli K-12)
30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli K-12)
A-site trna (23 kDa, RNA from Escherichia coli K-12)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli K-12)
5s rrna (38 kDa, RNA from Escherichia coli K-12)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli K-12)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli K-12)

[Show more]

EMD-13959

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Structure of the B. subtilis disome - stalled 70S ribosome

Release date: March 16, 2022
Resolution: 4.75 Å
EM Method: Single-particle
Fitted PDBs: 7qgu
Q-score: 0.225

Saito K, Kratzat H, Campbell A, Buschauer R, Burroughs AM, Berninghausen O, Aravind L, Green R, Beckmann R, Buskirk AR

Nature (2022) 603 pp. 503-508 [ DOI: doi:10.1038/s41586-022-04416-7 Pubmed: 35264790 ]

Sample:

50s ribosomal protein l24 (11 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l3 (22 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l30 (6 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s5 (17 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l13 (16 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l11 (14 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l35 (7 kDa, Protein from Bacillus subtilis)
23s rrna (949 kDa, RNA from Bacillus subtilis)
50s ribosomal protein l21 (11 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l20 (13 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s4 (22 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s9 (14 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s12 (15 kDa, Protein from Bacillus subtilis)
5s rrna (38 kDa, RNA from Bacillus subtilis)
P-site trna (24 kDa, RNA from Bacillus subtilis)
50s ribosomal protein l33 (5 kDa, Protein from Bacillus subtilis)
Ribosomal protein l6 (19 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s18 (8 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l16 (16 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s2 (28 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s3 (24 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s14 type z (7 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s13 (13 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s17 (10 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l31 (7 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l4 (22 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s7 (17 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l9 (16 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l2 (30 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l5 (20 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis)
Stalled ribosome of the disome structure (Complex from Bacillus subtilis)
16s rrna (503 kDa, RNA from Bacillus subtilis)
30s ribosomal protein s19 (10 kDa, Protein from Bacillus subtilis)
Yqzj (11 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l17 (13 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s15 (10 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l29 (7 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s11 (13 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l34 (5 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s10 (11 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l22 (12 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l10 (18 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s16 (10 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s6 (11 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s8 (14 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l23 (10 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s20 (9 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l27 (10 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l28 (6 kDa, Protein from Bacillus subtilis)

[Show more]

EMD-13961

Download Map 3D View

Structure of the B. subtilis disome - collided 70S ribosome

Release date: March 16, 2022
Resolution: 5.45 Å
EM Method: Single-particle
Fitted PDBs: 7qh4
Q-score: 0.168

Saito K, Kratzat H, Campbell A, Buschauer R, Burroughs AM, Berninghausen O, Aravind L, Green R, Beckmann R, Buskirk AR

Nature (2022) 603 pp. 503-508 [ DOI: doi:10.1038/s41586-022-04416-7 Pubmed: 35264790 ]

Sample:

50s ribosomal protein l24 (11 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l3 (22 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l30 (6 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s5 (17 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l13 (16 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l11 (14 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l35 (7 kDa, Protein from Bacillus subtilis)
23s rrna (949 kDa, RNA from Bacillus subtilis)
50s ribosomal protein l21 (11 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l20 (13 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s4 (22 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s9 (14 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s12 (15 kDa, Protein from Bacillus subtilis)
5s rrna (38 kDa, RNA from Bacillus subtilis)
50s ribosomal protein l33 (5 kDa, Protein from Bacillus subtilis)
Ribosomal protein l6 (19 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s18 (8 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l16 (16 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s2 (28 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s3 (24 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s14 type z (7 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s13 (13 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s17 (10 kDa, Protein from Bacillus subtilis)
Collided ribosome of the disome structure (Complex from Bacillus subtilis)
50s ribosomal protein l4 (22 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s7 (17 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l2 (30 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l5 (20 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis)
16s rrna (503 kDa, RNA from Bacillus subtilis)
Trna (24 kDa, RNA from Bacillus subtilis)
30s ribosomal protein s19 (10 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l17 (13 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s15 (10 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l29 (7 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s11 (13 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l34 (5 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s10 (11 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l22 (12 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l10 (18 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s16 (10 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s6 (11 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s8 (14 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l23 (10 kDa, Protein from Bacillus subtilis)
30s ribosomal protein s20 (9 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l27 (10 kDa, Protein from Bacillus subtilis)
50s ribosomal protein l28 (6 kDa, Protein from Bacillus subtilis)

[Show more]

EMD-10705

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Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX

Release date: July 1, 2020
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 6y69
Q-score: 0.486

Osterman IA, Wieland M, Maviza TP, Lashkevich KA, Lukianov DA, Komarova ES, Zakalyukina YV, Buschauer R, Shiriaev DI, Leyn SA, Zlamal JE, Biryukov MV, Skvortsov DA, Tashlitsky VN, Polshakov VI, Cheng J, Polikanov YS, Bogdanov AA, Osterman AL, Dmitriev SE, Beckmann R, Dontsova OA, Wilson DN, Sergiev PV

Nat Chem Biol (2020) 16 pp. 1071-1077 [ DOI: doi:10.1038/s41589-020-0578-x Pubmed: 32601485 ]

Sample:

Cryo-em structure of the antibiotic tetracenomycinx bound to the escherichia coli 70s ribosome (2 MDa, Complex from Escherichia coli K-12)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli (strain K12))
16s ribosomal rna (498 kDa, RNA from Escherichia coli (strain K12))
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli (strain K12))
E-site trna (24 kDa, RNA from Escherichia coli (strain K12))
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l9 (8 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli (strain K12))
5s ribosomal rna (38 kDa, RNA from Escherichia coli (strain K12))
50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s21 (7 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli (strain K12))
Tetracenomycin x (486 Da, Ligand)
30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli (strain K12))
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s7 (17 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli (strain K12))
23s ribosomal rna (941 kDa, RNA from Escherichia coli (strain K12))
Ribosome hibernation promoting factor (10 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli (strain K12))

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