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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

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offer vital services to scientists in the member states

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scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"30S ribosomal protein S14" AND microscope_name:"FEI TITAN KRIOS" AND sample_type:"cellular component"

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EMD-24944

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Damaged 70S ribosome with PrfH bound

Release date: Aug. 3, 2022
Resolution: 2.55 Å
EM Method: Single-particle
Fitted PDBs: 7sa4
Q-score: 0.61

Tian Y, Zeng F, Raybarman A, Fatma S, Carruthers A, Li Q, Huang RH

PNAS (2022) 119 pp. e2202464119-e2202464119 [ Pubmed: 35858322 DOI: doi:10.1073/pnas.2202464119 ]

Sample:

30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
23s ribosomal rna (941 kDa, RNA from Escherichia coli)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
Putative peptide chain release factor homolog (Cellular component)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
5s ribosomal rna (38 kDa, RNA from Escherichia coli)
30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
Trna (Cellular component)
50s (Complex)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
30s (Complex)
30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
Water (18 Da, Ligand)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
P-trna, e-trna (24 kDa, RNA from Escherichia coli)
Mrna (8 kDa, RNA from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
Damaged 70s with prfh (Complex from Escherichia coli)
16s ribosomal rna (497 kDa, RNA from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
Peptide chain release factor h (23 kDa, Protein from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)

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EMD-13244

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PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state III

Release date: Feb. 23, 2022
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7p7t
Q-score: 0.534

Crowe-McAuliffe C, Murina V, Turnbull KJ, Huch S, Kasari M, Takada H, Nersisyan L, Sundsfjord A, Hegstad K, Atkinson GC, Pelechano V, Wilson DN, Hauryliuk V

Nat Commun (2022) 13 pp. 1860-1860 [ DOI: doi:10.1038/s41467-022-29274-9 Pubmed: 35387982 ]

Sample:

30s ribosomal protein s19 (10 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s11 (13 kDa, Protein from Enterococcus faecalis)
A-site trna (24 kDa, RNA from Escherichia coli)
30s ribosomal protein s5 (17 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l33 (6 kDa, Protein from Enterococcus faecalis)
Are-abc-f family resistance factor poxta (67 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s16 (10 kDa, Protein from Enterococcus faecalis)
Mrna (6 kDa, RNA from Enterococcus faecalis)
50s ribosomal protein l22 (12 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l34 (5 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l13 (16 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s7 (17 kDa, Protein from Enterococcus faecalis)
Trna-fmet (24 kDa, RNA from Enterococcus faecalis)
70s ribosome (Cellular component from Enterococcus faecalis)
16s rrna (504 kDa, RNA from Enterococcus faecalis)
30s ribosomal protein s17 (10 kDa, Protein from Enterococcus faecalis)
23s rrna (944 kDa, RNA from Enterococcus faecalis)
50s ribosomal protein l29 (7 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l14 (13 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l24 (11 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s2 (29 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s8 (14 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s15 (10 kDa, Protein from Enterococcus faecalis)
A-site trna (Complex from Escherichia coli)
50s ribosomal protein l31 type b (10 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l15 (15 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l30 (6 kDa, Protein from Enterococcus faecalis)
Potassium ion (39 Da, Ligand)
Zinc ion (65 Da, Ligand)
Complex of poxta-eq2 bound to the 70s ribosome from e. faecalis (initiation complex), state iii. (Complex)
30s ribosomal protein s13 (13 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l6 (19 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l21 (11 kDa, Protein from Enterococcus faecalis)
Are-abc-f family resistance factor poxta (Complex from Enterococcus faecalis)
1,4-diaminobutane (88 Da, Ligand)
50s ribosomal protein l16 (16 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l28 (7 kDa, Protein from Enterococcus faecalis)
Adenosine-5'-triphosphate (507 Da, Ligand)
50s ribosomal protein l23 (11 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l19 (13 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l35 (7 kDa, Protein from Enterococcus faecalis)
5s rrna (37 kDa, RNA from Enterococcus faecalis)
30s ribosomal protein s18 (9 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l32 (6 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l18 (12 kDa, Protein from Enterococcus faecalis)
Water (18 Da, Ligand)
50s ribosomal protein l3 (22 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s3 (24 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s12 (15 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l5 (20 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s10 (11 kDa, Protein from Enterococcus faecalis)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l2 (30 kDa, Protein from Enterococcus faecalis)
Spectinomycin (332 Da, Ligand)
50s ribosomal protein l1 (24 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s4 (23 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l36 (4 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s6 (11 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s14 type z (7 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s9 (14 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l4 (22 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l27 (10 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l20 (13 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s20 (8 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l17 (14 kDa, Protein from Enterococcus faecalis)

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EMD-10791

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70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Release date: Jan. 27, 2021
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6yef
Q-score: 0.569

Golubev A, Fatkhullin B, Khusainov I, Jenner L, Gabdulkhakov A, Validov S, Yusupova G, Yusupov M, Usachev K

FEBS Lett (2020) 594 pp. 3551-3567 [ Pubmed: 32852796 DOI: doi:10.1002/1873-3468.13915 ]

Sample:

30s ribosomal protein s18 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
70s ribosome (Complex)
50s ribosomal protein l33 2 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
E-site trna (Cellular component from Escherichia coli DH5[alpha])
23s rrna (946 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
23s and 5s rrna, 50s ribosomal subunit (Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l27 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s5 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
P-site trna (25 kDa, RNA from Escherichia coli DH5[alpha])
50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l5 (20 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s16 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Mrna (Complex from synthetic construct)
50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Potassium ion (39 Da, Ligand)
50s ribosomal protein l31 type b (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
16s rrna, 30s ribosomal subunit (Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
30s ribosomal protein s11 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
16s rrna (503 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l25 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s4 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s19 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l29 (8 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l16 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Ribosomal protein us10 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
30s ribosomal protein s17 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
5s rrna (36 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
30s ribosomal protein s3 (24 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s20 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s14 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Mrna (9 kDa, RNA from synthetic construct)
50s ribosomal protein l2 (30 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))

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EMD-4476

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Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Release date: March 13, 2019
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6q97
Q-score: -0.001

Rae CD, Gordiyenko Y, Ramakrishnan V

Science (2019) 363 pp. 740-744 [ DOI: doi:10.1126/science.aav9370 Pubmed: 30765567 ]

Sample:

50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
Nascent peptide (2 kDa, Protein from Escherichia coli)
Trna-met (24 kDa, RNA from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
Transfer-messenger rna (tmrna) (117 kDa, RNA from Escherichia coli)
Water (18 Da, Ligand)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
Ssra-binding protein (16 kDa, Protein from Escherichia coli)
16s ribosomal rna (497 kDa, RNA from Escherichia coli)
70s ribosome (Cellular component from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (25 kDa, Protein from Escherichia coli)
30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
50s ribosomal protein l29 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
Mrna (1 kDa, RNA from Escherichia coli)
30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
Tmrna-smpb, nascent peptide, mrna, p-site trna, e-site trna (Complex from Escherichia coli)
5s ribosomal rna (38 kDa, RNA from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
Tmrna smpb bound in a site of e. coli 70s ribosome (Complex)
50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
23s ribosomal rna (941 kDa, RNA from Escherichia coli)
30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
50s ribosomal protein l13 (15 kDa, Protein from Escherichia coli)
Trna-val (24 kDa, RNA from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l10 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s6 (12 kDa, Protein from Escherichia coli)
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)

[Show more]

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Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

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Select database:

EMDB [4]

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Select the script type:

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