Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 7zag
Q-score: 0.56
Kazan R, Bourgeois G, Lazennec-Schurdevin C, Larquet E, Mechulam Y, Coureux PD, Schmitt E
Nucleic Acids Res (2022) 50 pp. 6532-6548 [ DOI: doi:10.1093/nar/gkac490 Pubmed: 35694843 ]
- Met-trnaimet, translation initiation factor 1a and translation initiation factor 5b (Complex from Pyrococcus abyssi GE5)
- Zn-ribbon rna-binding protein involved in translation (7 kDa, Protein from Pyrococcus abyssi GE5)
- Methionine (149 Da, Ligand)
- Translation initiation factor 5b (69 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 1a (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s27e (7 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi GE5)
- Rrna (487 kDa, RNA from Pyrococcus abyssi GE5)
- 30s and 50s ribosomal proteins (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s28e (8 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17 (13 kDa, Protein from Pyrococcus abyssi GE5)
- Mrna (8 kDa, RNA from Pyrococcus abyssi GE5)
- Zinc ion (65 Da, Ligand)
- Mrna (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi GE5)
- Complex of 30s ribosomal subunit with initiation factor aif1a, the c-terminal domain of aif5b, mrna and trna (Complex)
- 30s ribosomal protein s17e (8 kDa, Protein from Pyrococcus abyssi GE5)
- Water (18 Da, Ligand)
- 30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi GE5)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein l41e (4 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi GE5)
- Met-trnaimet (24 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi GE5)
Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA, mRNA, aIF1A and aIF5B
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7zah
Q-score: 0.591
Kazan R, Bourgeois G, Lazennec-Schurdevin C, Larquet E, Mechulam Y, Coureux PD, Schmitt E
Nucleic Acids Res (2022) 50 pp. 6532-6548 [ DOI: doi:10.1093/nar/gkac490 Pubmed: 35694843 ]
- Zn-ribbon rna-binding protein involved in translation (7 kDa, Protein from Pyrococcus abyssi GE5)
- Methionine (149 Da, Ligand)
- Mrna (7 kDa, RNA from Pyrococcus abyssi GE5)
- Translation initiation factor 5b (69 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 1a (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s27e (7 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s28e (7 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi GE5)
- Initiation complex with 30s ribosomal subunit,trna, mrna and initiation factors 1a and 5b (Complex)
- 30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi GE5)
- Trna-met, translation initiation factor 1a and translation initiation factor 5b (Complex from Pyrococcus abyssi GE5)
- 30s and 50s ribosomal proteins (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi GE5)
- Trna-met (24 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17 (13 kDa, Protein from Pyrococcus abyssi GE5)
- Zinc ion (65 Da, Ligand)
- Mrna (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17e (8 kDa, Protein from Pyrococcus abyssi GE5)
- Water (18 Da, Ligand)
- 30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi GE5)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein l41e (4 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi GE5)
- 16s rrna (487 kDa, RNA from Pyrococcus abyssi GE5)
Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA, mRNA and aIF1A.
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7zai
Q-score: 0.587
Kazan R, Bourgeois G, Lazennec-Schurdevin C, Larquet E, Mechulam Y, Coureux PD, Schmitt E
Nucleic Acids Res (2022) 50 pp. 6532-6548 [ DOI: doi:10.1093/nar/gkac490 Pubmed: 35694843 ]
- Zn-ribbon rna-binding protein involved in translation (7 kDa, Protein from Pyrococcus abyssi GE5)
- Methionine (149 Da, Ligand)
- 30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 1a (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal subunit with initiation factor 1a, mrna and initiator trna (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s28e (8 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi GE5)
- Trna-met (24 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17 (13 kDa, Protein from Pyrococcus abyssi GE5)
- Mrna (8 kDa, RNA from Pyrococcus abyssi GE5)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17e (8 kDa, Protein from Pyrococcus abyssi GE5)
- Water (18 Da, Ligand)
- 30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi GE5)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s27e (7 kDa, Protein from Pyrococcus abyssi)
- 50s ribosomal protein l41e (4 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi GE5)
- 16s rrna (487 kDa, RNA from Pyrococcus abyssi GE5)
Resolution: 2.25 Å
EM Method: Single-particle
Fitted PDBs: 7zhg
Q-score: 0.696
Kazan R, Bourgeois G, Lazennec-Schurdevin C, Larquet E, Mechulam Y, Coureux PD, Schmitt E
Nucleic Acids Res (2022) 50 pp. 6532-6548 [ Pubmed: 35694843 DOI: doi:10.1093/nar/gkac490 ]
- 30s ribosomal protein s28e (8 kDa, Protein from Pyrococcus abyssi GE5)
- Rrna 16s (487 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17e (8 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi GE5)
- Mrna (5 kDa, RNA from Pyrococcus abyssi GE5)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s17 (13 kDa, Protein from Pyrococcus abyssi GE5)
- High resolution 30s ribosomal subunit with a fragment of mrna and trna (Complex)
- 30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi GE5)
- High resolution 30s ribosomal subunit with a fragment of mrna (Complex from Pyrococcus abyssi GE5)
- Met-trnaimet (24 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi GE5)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s27e (7 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein l41e (4 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi GE5)
- Water (18 Da, Ligand)
- Met-trnaimet (Complex from Pyrococcus abyssi GE5)
- Zn-ribbon rna-binding protein involved in translation (7 kDa, Protein from Pyrococcus abyssi GE5)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6sw9
Q-score: 0.337
Coureux PD, Lazennec-Schurdevin C, Bourcier S, Mechulam Y, Schmitt E
Commun Biol (2020) 3 pp. 58-58 [ DOI: doi:10.1038/s42003-020-0780-0 Pubmed: 32029867 ]
- 30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 2 subunit alpha (28 kDa, Protein from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
- 30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s17 (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Methionine (149 Da, Ligand)
- 30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Ribosome (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Mrna (6 kDa, RNA from Pyrococcus abyssi GE5)
- Initiator met-trna fmet from e. coli (a1u72 variant) (24 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 2 subunit beta (14 kDa, Protein from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
- 30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Trna (Complex from Escherichia coli)
- 30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Zinc ion (65 Da, Ligand)
- Mrna (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 1a (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Water (18 Da, Ligand)
- 30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Magnesium ion (24 Da, Ligand)
- Zn-ribbon rna-binding protein involved in translation (7 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 2 subunit gamma (45 kDa, Protein from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
- 50s ribosomal protein l41e (4 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s28e (8 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Archaeal translation initiation complex devoid of aif1 - ic2a state (1 MDa, Complex)
- Translation initiation factor 1a (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s17e (8 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 16s ribosomal rna (487 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s27e (7 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 2 subunits alpha, beta and gamma (Complex from Saccharolobus solfataricus P2)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6swc
Q-score: 0.438
Coureux PD, Lazennec-Schurdevin C, Bourcier S, Mechulam Y, Schmitt E
Commun Biol (2020) 3 pp. 58-58 [ DOI: doi:10.1038/s42003-020-0780-0 Pubmed: 32029867 ]
- Archaeal translation initiation complex devoid of aif1 - ic2b state (1 MDa, Complex)
- Translation initiation factor 2 subunit alpha, beta (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s17 (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein al41 (4 kDa, Protein from Pyrococcus abyssi GE5)
- Methionine (149 Da, Ligand)
- 30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 2 subunit beta (15 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 2 subunit alpha (30 kDa, Protein from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
- 30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Mrna (6 kDa, RNA from Pyrococcus abyssi GE5)
- Initiator met-trna fmet from e. coli (a1u72 variant) (24 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 16s ribosomal rrna (487 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Zinc ion (65 Da, Ligand)
- Translation initiation factor 2 subunit gamma (Complex from Saccharolobus solfataricus P2)
- Mrna (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 1a (Complex from Pyrococcus abyssi GE5)
- Ribosomal proteins + rna (Complex from Pyrococcus abyssi GE5)
- 30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Water (18 Da, Ligand)
- 30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Magnesium ion (24 Da, Ligand)
- Zn-ribbon rna-binding protein involved in translation (7 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 2 subunit gamma (45 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Trnai (Complex from Escherichia coli)
- 30s ribosomal protein s28e (8 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 1a (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s17e (8 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s27e (7 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6swe
Q-score: 0.51
Coureux PD, Lazennec-Schurdevin C, Bourcier S, Mechulam Y, Schmitt E
Commun Biol (2020) 3 pp. 58-58 [ DOI: doi:10.1038/s42003-020-0780-0 Pubmed: 32029867 ]
- 30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Initiator met-trna fmet from e. coli (a1u72 variant) (5 kDa, RNA from Escherichia coli)
- Initiator met-trna fmet from e. coli (a1u72 variant) (Complex from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Archaeal translation initiation complex devoid of aif1 - ic2 head (1 MDa, Complex)
- 16s ribosomal rna (152 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s (Complex from Pyrococcus abyssi (strain GE5 / Orsay))
- Translation initiation factor 1a (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Water (18 Da, Ligand)
- 30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- Magnesium ion (24 Da, Ligand)
- Translation initiation factor 1a (Complex from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s28e (8 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
- 30s ribosomal protein s17e (8 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Resolution: 5.34 Å
EM Method: Single-particle
Fitted PDBs: 5jb3
Q-score: 0.164
Coureux PD, Lazennec-Schurdevin C, Monestier A, Larquet E, Cladiere L, Klaholz BP, Schmitt E, Mechulam Y
Nat Commun (2016) 7 pp. 13366-13366 [ Pubmed: 27819266 DOI: doi:10.1038/ncomms13366 ]
- 30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 2 subunit beta (15 kDa, Protein from Pyrococcus abyssi GE5)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 30s ribosomal protein s28e (8 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 2 subunit alpha (30 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi GE5)
- Magnesium ion (24 Da, Ligand)
- 16s ribosomal rna (493 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17p (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi GE5)
- Initiator met-trna fmet from e. coli (a1u72 variant) (24 kDa, RNA from Escherichia coli)
- Methionine (149 Da, Ligand)
- Mrna (8 kDa, RNA from Pyrococcus abyssi GE5)
- 30s ribosomal protein sx (4 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi GE5)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s27e (6 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi GE5)
- 50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein el41 (3 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 1a (13 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s17e (7 kDa, Protein from Pyrococcus abyssi GE5)
- Protein translation factor sui1 homolog (11 kDa, Protein from Pyrococcus abyssi GE5)
- Translation initiation factor 2 subunit gamma (45 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi GE5)
- 30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi GE5)
- 30s archaeal translation initiation complex (982 kDa, Complex)