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sample_name:"30S ribosomal protein S14" AND xref_links:"drugbank" AND xref_links:"interpro"
A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNA
Release date: April 19, 2023
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7uvv
Q-score: 0.61
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7uvv
Q-score: 0.61
Morgan CE, Kang YS, Green AB, Smith KP, Dowgiallo MG, Miller BC, Chiaraviglio L, Truelson KA, Zulauf KE, Rodriguez S, Kang AD, Manetsch R, Yu EW, Kirby JE
PLoS Biol (2023) 21 pp. e3002091-e3002091 [ Pubmed: 37192172 DOI: doi:10.1371/journal.pbio.3002091 ]
Sample:
- 50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- Sf-70s ribosome complex with p-site trna (Complex from Acinetobacter baumannii AB0057)
- 23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter baumannii AB0057)
- Trna-met (24 kDa, RNA from Acinetobacter baumannii AB0057)
- Streptothricin f (502 Da, Ligand)
- Mrna (935 Da, RNA from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- 16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii AB0057)
A. baumannii ribosome: 70S with E-site tRNA
Release date: April 19, 2023
Resolution: 2.37 Å
EM Method: Single-particle
Fitted PDBs: 7uvw
Q-score: 0.617
Resolution: 2.37 Å
EM Method: Single-particle
Fitted PDBs: 7uvw
Q-score: 0.617
Morgan CE, Kang YS, Green AB, Smith KP, Dowgiallo MG, Miller BC, Chiaraviglio L, Truelson KA, Zulauf KE, Rodriguez S, Kang AD, Manetsch R, Yu EW, Kirby JE
PLoS Biol (2023) 21 pp. e3002091-e3002091 [ Pubmed: 37192172 DOI: doi:10.1371/journal.pbio.3002091 ]
Sample:
- 30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- 16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- Zinc ion (65 Da, Ligand)
- 23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter baumannii AB0057)
- A. baumannii 70s ribosome with e-site trna (Complex from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- Mrna (935 Da, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii AB0057)
- Trna-met (24 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii AB0057)
A. baumannii 70S ribosome-Streptothricin-F complex
Release date: April 19, 2023
Resolution: 2.35 Å
EM Method: Single-particle
Fitted PDBs: 7uvx
Q-score: 0.618
Resolution: 2.35 Å
EM Method: Single-particle
Fitted PDBs: 7uvx
Q-score: 0.618
Morgan CE, Kang YS, Green AB, Smith KP, Dowgiallo MG, Miller BC, Chiaraviglio L, Truelson KA, Zulauf KE, Rodriguez S, Kang AD, Manetsch R, Yu EW, Kirby JE
PLoS Biol (2023) 21 pp. e3002091-e3002091 [ Pubmed: 37192172 DOI: doi:10.1371/journal.pbio.3002091 ]
Sample:
- 30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- 16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- Streptothricin f (502 Da, Ligand)
- 30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- Sf-70s ribosome complex (Complex from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- Zinc ion (65 Da, Ligand)
- 23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii AB0057)
A. baumannii ribosome-Streptothricin-D complex: 70S with P-site tRNA
Release date: April 19, 2023
Resolution: 2.39 Å
EM Method: Single-particle
Fitted PDBs: 7uvy
Q-score: 0.622
Resolution: 2.39 Å
EM Method: Single-particle
Fitted PDBs: 7uvy
Q-score: 0.622
Morgan CE, Kang YS, Green AB, Smith KP, Dowgiallo MG, Miller BC, Chiaraviglio L, Truelson KA, Zulauf KE, Rodriguez S, Kang AD, Manetsch R, Yu EW, Kirby JE
PLoS Biol (2023) 21 pp. e3002091-e3002091 [ Pubmed: 37192172 DOI: doi:10.1371/journal.pbio.3002091 ]
Sample:
- 50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- Sd-70s ribosome complex with p-site trna (Complex from Acinetobacter baumannii AB0057)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- Streptothricin d (758 Da, Ligand)
- 50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- Water (18 Da, Ligand)
- 50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter baumannii AB0057)
- Trna-met (24 kDa, RNA from Acinetobacter baumannii AB0057)
- Mrna (935 Da, RNA from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- 16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii AB0057)
A. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNA
Release date: April 19, 2023
Resolution: 2.21 Å
EM Method: Single-particle
Fitted PDBs: 7uvz
Q-score: 0.637
Resolution: 2.21 Å
EM Method: Single-particle
Fitted PDBs: 7uvz
Q-score: 0.637
Morgan CE, Kang YS, Green AB, Smith KP, Dowgiallo MG, Miller BC, Chiaraviglio L, Truelson KA, Zulauf KE, Rodriguez S, Kang AD, Manetsch R, Yu EW, Kirby JE
PLoS Biol (2023) 21 pp. e3002091-e3002091 [ Pubmed: 37192172 DOI: doi:10.1371/journal.pbio.3002091 ]
Sample:
- 50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- Sd-70s ribosome complex with e-site trna (Complex from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- Streptothricin d (758 Da, Ligand)
- 50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- Water (18 Da, Ligand)
- 50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter baumannii AB0057)
- Trna-met (24 kDa, RNA from Acinetobacter baumannii AB0057)
- Mrna (935 Da, RNA from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- 16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii AB0057)
A. baumannii 70S ribosome-Streptothricin-D complex
Release date: April 19, 2023
Resolution: 2.21 Å
EM Method: Single-particle
Fitted PDBs: 7uw1
Q-score: 0.639
Resolution: 2.21 Å
EM Method: Single-particle
Fitted PDBs: 7uw1
Q-score: 0.639
Morgan CE, Kang YS, Green AB, Smith KP, Dowgiallo MG, Miller BC, Chiaraviglio L, Truelson KA, Zulauf KE, Rodriguez S, Kang AD, Manetsch R, Yu EW, Kirby JE
PLoS Biol (2023) 21 pp. e3002091-e3002091 [ Pubmed: 37192172 DOI: doi:10.1371/journal.pbio.3002091 ]
Sample:
- 50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii AB0057)
- Sd-70s ribosome complex (Complex from Acinetobacter baumannii AB0057)
- 5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- Streptothricin d (758 Da, Ligand)
- 50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- Water (18 Da, Ligand)
- 50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- 16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii AB0057)
Release date: April 12, 2023
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7zta
Q-score: 0.565
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7zta
Q-score: 0.565
Leroy EC, Perry TN, Renault TT, Innis CA
Nat Chem Biol (2023) 19 pp. 1091-1096 [ DOI: doi:10.1038/s41589-023-01343-0 Pubmed: 37322159 ]
Sample:
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal subunit (Complex from Escherichia coli K-12)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli K-12)
- Trna-gln (e site) (Complex from Escherichia coli K-12)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli K-12)
- Maaapqk nascent peptide (716 Da, Protein from Escherichia coli K-12)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli K-12)
- Cysteine (121 Da, Ligand)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli K-12)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli K-12)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli K-12)
- Structure of an escherichia coli 70s ribosome stalled by tetracenomycin x during translation of an maaapqk(c) peptide (Complex from Escherichia coli K-12)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli K-12)
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli K-12)
- Mrna (Complex from Escherichia coli K-12)
- Mrna (4 kDa, RNA from Escherichia coli K-12)
- Zinc ion (65 Da, Ligand)
- Tetracenomycin x (486 Da, Ligand)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal subunit (Complex from Escherichia coli K-12)
- Trna-cys (a site) (Complex from Escherichia coli K-12)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli K-12)
- 16s ribosomal rna (497 kDa, RNA from Escherichia coli K-12)
- 50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s21 (6 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli K-12)
- Water (18 Da, Ligand)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli K-12)
- Trna-cys (23 kDa, RNA from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli K-12)
- Trna-lys (24 kDa, RNA from Escherichia coli K-12)
- Trna-gln (24 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli K-12)
- Maaapqk-trna-lys (p site) (Complex)
- Glutamine (146 Da, Ligand)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli K-12)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli K-12)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s6, fully modified isoform (12 kDa, Protein from Escherichia coli K-12)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli K-12)
ARE-ABCF VmlR2 bound to a 70S ribosome
Release date: April 5, 2023
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8buu
Q-score: 0.514
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8buu
Q-score: 0.514
Obana N, Takada H, Crowe-McAuliffe C, Iwamoto M, Egorov AA, Wu KJY, Chiba S, Murina V, Paternoga H, Tresco BIC, Nomura N, Myers AG, Atkinson GC, Wilson DN, Hauryliuk V
Nucleic Acids Res (2023) 51 pp. 4536-4554 [ DOI: doi:10.1093/nar/gkad193 Pubmed: 36951104 ]
Sample:
- 30s ribosomal protein s15 (10 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l21 (11 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Potassium ion (39 Da, Ligand)
- 30s ribosomal protein s19 (10 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l5 (20 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l17 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s10 (11 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l24 (11 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l33 1 (5 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 23s rrna (949 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l22 (12 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s4 (22 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 70s ribosome with vmlr2 bound in the e site, a distorted trna in the p site, and a substoichiometric distorted trna in the a site (2 MDa, Complex from Neobacillus vireti)
- 50s ribosomal protein l4 (22 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l30 (6 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l23 (10 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s2 (28 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 16s rrna (503 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s12 (15 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Expz (72 kDa, Protein from Neobacillus vireti)
- 50s ribosomal protein l3 (22 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l2 (30 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Trna-fmet (24 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l29 (7 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l16 (16 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 5s rrna (38 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s14 (7 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s3 (24 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l13 (16 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s5 (17 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s8 (14 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s18 (8 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s7 (17 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s9 (14 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s6 (11 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s17 (10 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- Mrna (4 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s20 (9 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s13 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l27 (10 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l35 (7 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l6 (19 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l20 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l34 (5 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s16 (10 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s11 (13 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l28 (6 kDa, Protein from Bacillus subtilis subsp. subtilis str. 168)
Release date: April 5, 2023
Resolution: 2.02 Å
EM Method: Single-particle
Fitted PDBs: 8g6w
Q-score: 0.628
Resolution: 2.02 Å
EM Method: Single-particle
Fitted PDBs: 8g6w
Q-score: 0.628
Majumdar C, Walker JA, Francis MB, Schepartz A, Cate JHD
ACS Cent Sci (2023) 9 pp. 1160-1169 [ DOI: doi:10.1021/acscentsci.3c00153 Pubmed: 37396857 ]
Sample:
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- Mrna (9 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- A-site oabz-trnaphe (24 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
- P-site fmet-trnafmet (24 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
- 70s e.coli ribosome (Complex from Escherichia coli)
- Ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- Spermidine (145 Da, Ligand)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 16s rrna (499 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- 23s rrna (941 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 3'-amino-3'-deoxyadenosine 5'-(dihydrogen phosphate) (346 Da, Ligand)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
- 2-amino-benzamide (136 Da, Ligand)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- N-formylmethionine (177 Da, Ligand)
- Paromomycin (615 Da, Ligand)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound
Release date: March 22, 2023
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 8crx
Q-score: 0.519
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 8crx
Q-score: 0.519
Lomakin IB, Devarkar SC, Patel S, Grada A, Bunick CG
Nucleic Acids Res (2023) 51 pp. 2915-2930 [ Pubmed: 36864821 DOI: doi:10.1093/nar/gkad103 ]
Sample:
- 30s ribosomal protein s12 (13 kDa, Protein from Cutibacterium acnes)
- 30s ribosomal protein s6 (11 kDa, Protein from Cutibacterium acnes)
- 30s ribosomal protein s4 (23 kDa, Protein from Cutibacterium acnes)
- 30s ribosomal protein s15 (10 kDa, Protein from Cutibacterium acnes)
- 50s ribosomal protein l13 (16 kDa, Protein from Cutibacterium acnes)
- 50s ribosomal protein l22 (16 kDa, Protein from Cutibacterium acnes)
- 50s ribosomal protein l5 (23 kDa, Protein from Cutibacterium acnes)
- 50s ribosomal protein l30 (6 kDa, Protein from Cutibacterium acnes)
- 50s ribosomal protein l23 (11 kDa, Protein from Cutibacterium acnes)
- 30s ribosomal protein s3 (29 kDa, Protein from Cutibacterium acnes)
- 50s ribosomal protein l29 (8 kDa, Protein from Cutibacterium acnes)
- 30s ribosomal protein s8 (14 kDa, Protein from Cutibacterium acnes)
- 30s ribosomal protein s11 (14 kDa, Protein from Cutibacterium acnes)
- 30s ribosomal protein s7 (17 kDa, Protein from Cutibacterium acnes)
- 50s ribosomal protein l4 (32 kDa, Protein from Cutibacterium acnes)
- 50s ribosomal protein l14 (13 kDa, Protein from Cutibacterium acnes)
- 50s ribosomal protein l28 (6 kDa, Protein from Cutibacterium acnes)
- 50s ribosomal protein l16 (15 kDa, Protein from Cutibacterium acnes)
- 50s ribosomal protein l21 (11 kDa, Protein from Cutibacterium acnes)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l31 (7 kDa, Protein from Cutibacterium acnes)
- 50s ribosomal protein l3 (23 kDa, Protein from Cutibacterium acnes)
- 70s ribosome with mrna, p-site trna and sarecycline bound (Complex from Cutibacterium acnes)
- 30s ribosomal protein s13 (14 kDa, Protein from Cutibacterium acnes)
- 50s ribosomal protein l15 (15 kDa, Protein from Cutibacterium acnes)
- 50s ribosomal protein bl37 (2 kDa, Protein from Cutibacterium acnes)
- 50s ribosomal protein l32 (6 kDa, Protein from Cutibacterium acnes)
- 30s ribosomal protein s17 (10 kDa, Protein from Cutibacterium acnes)
- 50s ribosomal protein l24 (13 kDa, Protein from Cutibacterium acnes)
- 50s ribosomal protein l2 (30 kDa, Protein from Cutibacterium acnes)
- Water (18 Da, Ligand)
- 50s ribosomal protein l34 (5 kDa, Protein from Cutibacterium acnes)
- 32mf mrna (7 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l17 (20 kDa, Protein from Cutibacterium acnes)
- 50s ribosomal protein l18 (13 kDa, Protein from Cutibacterium acnes)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l33 (6 kDa, Protein from Cutibacterium acnes)
- 5s ribosomal rna (38 kDa, RNA from Cutibacterium acnes)
- 50s ribosomal protein l35 (7 kDa, Protein from Cutibacterium acnes)
- Sarecycline (487 Da, Ligand)
- 30s ribosomal protein s19 (10 kDa, Protein from Cutibacterium acnes)
- 30s ribosomal protein s5 (22 kDa, Protein from Cutibacterium acnes)
- 50s ribosomal protein l19 (13 kDa, Protein from Cutibacterium acnes)
- 30s ribosomal protein s10 (11 kDa, Protein from Cutibacterium acnes)
- 23s ribosomal rna (1 MDa, RNA from Cutibacterium acnes)
- 30s ribosomal protein s2 (31 kDa, Protein from Cutibacterium acnes)
- 50s ribosomal protein l20 (13 kDa, Protein from Cutibacterium acnes)
- 50s ribosomal protein l25 (22 kDa, Protein from Cutibacterium acnes)
- 50s ribosomal protein l6 (19 kDa, Protein from Cutibacterium acnes)
- 30s ribosomal protein s18 (8 kDa, Protein from Cutibacterium acnes)
- 30s ribosomal protein s20 (9 kDa, Protein from Cutibacterium acnes)
- 30s ribosomal protein s16 (15 kDa, Protein from Cutibacterium acnes)
- 50s ribosomal protein l27 (9 kDa, Protein from Cutibacterium acnes)
- P-site initiator trna (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Cutibacterium acnes)
- Rna (1537-mer) (498 kDa, RNA from Cutibacterium acnes)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Cutibacterium acnes)
- 30s ribosomal protein s9 (18 kDa, Protein from Cutibacterium acnes)
- 30s ribosomal protein bs22 (4 kDa, Protein from Cutibacterium acnes)