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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"30S ribosomal protein S3Ae" AND natural_source_ncbi_code:"562"

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EMD-10320

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IC2A cryo-EM map of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Release date: Feb. 19, 2020
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6sw9
Q-score: 0.337

Coureux PD, Lazennec-Schurdevin C, Bourcier S, Mechulam Y, Schmitt E

Commun Biol (2020) 3 pp. 58-58 [ DOI: doi:10.1038/s42003-020-0780-0 Pubmed: 32029867 ]

Sample:

30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Translation initiation factor 2 subunit alpha (28 kDa, Protein from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s17 (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Methionine (149 Da, Ligand)
30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Ribosome (Complex from Pyrococcus abyssi GE5)
30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Mrna (6 kDa, RNA from Pyrococcus abyssi GE5)
Initiator met-trna fmet from e. coli (a1u72 variant) (24 kDa, RNA from Escherichia coli)
30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Translation initiation factor 2 subunit beta (14 kDa, Protein from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Trna (Complex from Escherichia coli)
30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Zinc ion (65 Da, Ligand)
Mrna (Complex from Pyrococcus abyssi GE5)
30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Translation initiation factor 1a (Complex from Pyrococcus abyssi GE5)
30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Water (18 Da, Ligand)
30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Magnesium ion (24 Da, Ligand)
Zn-ribbon rna-binding protein involved in translation (7 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Translation initiation factor 2 subunit gamma (45 kDa, Protein from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
50s ribosomal protein l41e (4 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein s28e (8 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Archaeal translation initiation complex devoid of aif1 - ic2a state (1 MDa, Complex)
Translation initiation factor 1a (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s17e (8 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
16s ribosomal rna (487 kDa, RNA from Pyrococcus abyssi GE5)
30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s27e (7 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Translation initiation factor 2 subunits alpha, beta and gamma (Complex from Saccharolobus solfataricus P2)

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EMD-10322

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IC2B cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Release date: Feb. 19, 2020
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6swc
Q-score: 0.438

Coureux PD, Lazennec-Schurdevin C, Bourcier S, Mechulam Y, Schmitt E

Commun Biol (2020) 3 pp. 58-58 [ DOI: doi:10.1038/s42003-020-0780-0 Pubmed: 32029867 ]

Sample:

Archaeal translation initiation complex devoid of aif1 - ic2b state (1 MDa, Complex)
Translation initiation factor 2 subunit alpha, beta (Complex from Pyrococcus abyssi GE5)
30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s17 (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein al41 (4 kDa, Protein from Pyrococcus abyssi GE5)
Methionine (149 Da, Ligand)
30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Translation initiation factor 2 subunit beta (15 kDa, Protein from Pyrococcus abyssi GE5)
Translation initiation factor 2 subunit alpha (30 kDa, Protein from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Mrna (6 kDa, RNA from Pyrococcus abyssi GE5)
Initiator met-trna fmet from e. coli (a1u72 variant) (24 kDa, RNA from Escherichia coli)
30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
16s ribosomal rrna (487 kDa, RNA from Pyrococcus abyssi GE5)
30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Zinc ion (65 Da, Ligand)
Translation initiation factor 2 subunit gamma (Complex from Saccharolobus solfataricus P2)
Mrna (Complex from Pyrococcus abyssi GE5)
30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Translation initiation factor 1a (Complex from Pyrococcus abyssi GE5)
Ribosomal proteins + rna (Complex from Pyrococcus abyssi GE5)
30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Water (18 Da, Ligand)
30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Magnesium ion (24 Da, Ligand)
Zn-ribbon rna-binding protein involved in translation (7 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Translation initiation factor 2 subunit gamma (45 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Trnai (Complex from Escherichia coli)
30s ribosomal protein s28e (8 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
Translation initiation factor 1a (13 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s17e (8 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))
30s ribosomal protein s27e (7 kDa, Protein from Pyrococcus abyssi (strain GE5 / Orsay))

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EMD-8148

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Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-REMOTE conformation

Release date: Nov. 30, 2016
Resolution: 5.34 Å
EM Method: Single-particle
Fitted PDBs: 5jb3
Q-score: 0.164

Coureux PD, Lazennec-Schurdevin C, Monestier A, Larquet E, Cladiere L, Klaholz BP, Schmitt E, Mechulam Y

Nat Commun (2016) 7 pp. 13366-13366 [ Pubmed: 27819266 DOI: doi:10.1038/ncomms13366 ]

Sample:

30s ribosomal protein s15 (18 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein s12 (16 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein s19e (17 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein s24e (11 kDa, Protein from Pyrococcus abyssi GE5)
Translation initiation factor 2 subunit beta (15 kDa, Protein from Pyrococcus abyssi GE5)
Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
30s ribosomal protein s28e (8 kDa, Protein from Pyrococcus abyssi GE5)
Translation initiation factor 2 subunit alpha (30 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein s8 (14 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein s7 (24 kDa, Protein from Pyrococcus abyssi GE5)
Magnesium ion (24 Da, Ligand)
16s ribosomal rna (493 kDa, RNA from Pyrococcus abyssi GE5)
30s ribosomal protein s27ae (5 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein s4e (28 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein s17p (13 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein s13 (16 kDa, Protein from Pyrococcus abyssi GE5)
Initiator met-trna fmet from e. coli (a1u72 variant) (24 kDa, RNA from Escherichia coli)
Methionine (149 Da, Ligand)
Mrna (8 kDa, RNA from Pyrococcus abyssi GE5)
30s ribosomal protein sx (4 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein s2 (23 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein s3ae (22 kDa, Protein from Pyrococcus abyssi GE5)
Zinc ion (65 Da, Ligand)
30s ribosomal protein s11 (14 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein s10 (11 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein s14 type z (6 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein s27e (6 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein s5 (26 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein s8e (14 kDa, Protein from Pyrococcus abyssi GE5)
50s ribosomal protein l7ae (13 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein el41 (3 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein s4 (21 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein s6e (14 kDa, Protein from Pyrococcus abyssi GE5)
Translation initiation factor 1a (13 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein s19 (15 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein s17e (7 kDa, Protein from Pyrococcus abyssi GE5)
Protein translation factor sui1 homolog (11 kDa, Protein from Pyrococcus abyssi GE5)
Translation initiation factor 2 subunit gamma (45 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein s9 (15 kDa, Protein from Pyrococcus abyssi GE5)
30s ribosomal protein s3 (23 kDa, Protein from Pyrococcus abyssi GE5)
30s archaeal translation initiation complex (982 kDa, Complex)

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Sort by: Download

Showing 1 - 3 of 3. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [3]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: