EMDB < Search results

EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

Edit your search query here and hit Return to execute it:

sample_name:"30S ribosomal protein S4" AND film_detector_model:"FEI FALCON II (4K X 4K)" AND xref_links:"pdbekb" AND author_name:"Jha V"

Sort by: Download

Showing 1 - 5 of 5. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [5]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

EMD-22345

Download Map 3D View

70S ribosome Flavobacterium johnsoniae

Release date: Dec. 2, 2020
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7jil
Q-score: 0.534

Jha V, Roy B, Jahagirdar D, McNutt ZA, Shatoff EA, Boleratz BL, Watkins DE, Bundschuh R, Basu K, Ortega J, Fredrick K

Nucleic Acids Res (2021) 49 pp. 547-567 [ Pubmed: 33330920 DOI: doi:10.1093/nar/gkaa1195 ]

Sample:

50s ribosomal protein l29 (7 kDa, Protein from Flavobacterium johnsoniae)
30s ribosomal protein s20 (9 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l34 (6 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l15 (15 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l9 (15 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l30 (6 kDa, Protein from Flavobacterium johnsoniae)
30s ribosomal protein s3 (27 kDa, Protein from Flavobacterium johnsoniae)
30s ribosomal protein s8 (14 kDa, Protein from Flavobacterium johnsoniae)
30s ribosomal protein s12 (14 kDa, Protein from Flavobacterium sp. Root186)
Rna (2862-mer) (927 kDa, RNA from Flavobacterium johnsoniae)
30s ribosomal protein s16 (20 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l18 (12 kDa, Protein from Flavobacterium johnsoniae)
30s ribosomal protein s10 (11 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l33 (6 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l17 (18 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l21 (15 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l31 (9 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l24 (11 kDa, Protein from Flavobacterium johnsoniae)
30s ribosomal protein s22 (3 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l14 (13 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l4 (23 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l6 (19 kDa, Protein from Flavobacterium johnsoniae)
30s ribosomal protein s6 (13 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l27 (9 kDa, Protein from Flavobacterium johnsoniae)
30s ribosomal protein s14 (10 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l22 (15 kDa, Protein from Flavobacterium johnsoniae)
30s ribosomal protein s13 (13 kDa, Protein from Flavobacterium johnsoniae)
30s ribosomal protein s17 (10 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l2 (29 kDa, Protein from Flavobacterium johnsoniae)
30s ribosomal protein s7 (18 kDa, Protein from Flavobacterium johnsoniae)
Rna (1519-mer) (491 kDa, RNA from Flavobacterium johnsoniae)
50s ribosomal protein l19 (13 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l32 (7 kDa, Protein from Flavobacterium johnsoniae)
Water (18 Da, Ligand)
30s ribosomal protein s21 (7 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l25 (21 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l38 (5 kDa, Protein from Flavobacterium johnsoniae)
30s ribosomal protein s9 (14 kDa, Protein from Flavobacterium johnsoniae)
30s ribosomal protein s11 (13 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l20 (13 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l3 (21 kDa, Protein from Flavobacterium johnsoniae)
30s ribosomal protein s4 (22 kDa, Protein from Flavobacterium johnsoniae)
30s ribosomal protein s5 (18 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l5 (20 kDa, Protein from Flavobacterium johnsoniae)
30s ribosomal protein s15 (10 kDa, Protein from Flavobacterium johnsoniae)
70s ribosome flavobacterium johnsoniae (Complex from Flavobacterium johnsoniae)
30s ribosomal protein s18 (11 kDa, Protein from Flavobacterium johnsoniae)
Rna (111-mer) (35 kDa, RNA from Flavobacterium johnsoniae)
50s ribosomal protein l23 (10 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l16 (16 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l28 (8 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l36 (4 kDa, Protein from Flavobacterium johnsoniae)
30s ribosomal protein s19 (10 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l35 (7 kDa, Protein from Flavobacterium johnsoniae)
50s ribosomal protein l13 (16 kDa, Protein from Flavobacterium johnsoniae)

[Show more]

EMD-21569

Download Map 3D View

30S-Inactivated-high-Mg2+ Class A

Release date: Oct. 21, 2020
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6w77
Q-score: 0.354

Jahagirdar D, Jha V, Basu K, Gomez-Blanco J, Vargas J, Ortega J

RNA (2020) 26 pp. 2017-2030 [ Pubmed: 32989043 DOI: doi:10.1261/rna.075846.120 ]

Sample:

30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli (strain K12))
30s-activated-high-mg2+ (Complex from Escherichia coli K-12)
Rna (1519-mer) (499 kDa, RNA from Escherichia coli (strain K12))
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli (strain K12))

[Show more]

EMD-21571

Download Map 3D View

30S-Inactive-high-Mg2+ + carbon layer

Release date: Oct. 21, 2020
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6w7m
Q-score: 0.263

Jahagirdar D, Jha V, Basu K, Gomez-Blanco J, Vargas J, Ortega J

RNA (2020) 26 pp. 2017-2030 [ DOI: doi:10.1261/rna.075846.120 Pubmed: 32989043 ]

Sample:

30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli (strain K12))
30s-activated-high-mg2+ (Complex from Escherichia coli K-12)
30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli (strain K12))
16s rrna (499 kDa, RNA from Escherichia coli (strain K12))

[Show more]

EMD-21572

Download Map 3D View

30S-Inactive-low-Mg2+ Class A

Release date: Oct. 21, 2020
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6w7n
Q-score: 0.362

Jahagirdar D, Jha V, Basu K, Gomez-Blanco J, Vargas J, Ortega J

RNA (2020) 26 pp. 2017-2030 [ Pubmed: 32989043 DOI: doi:10.1261/rna.075846.120 ]

Sample:

30s-activated-high-mg2+ (Complex from Escherichia coli K-12)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli (strain K12))
16s rrna (499 kDa, RNA from Escherichia coli (strain K12))
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli (strain K12))

[Show more]

EMD-21573

Download Map 3D View

30S-Inactive-low-Mg2+ Class B

Release date: Oct. 21, 2020
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6w7w
Q-score: 0.361

Jahagirdar D, Jha V, Basu K, Gomez-Blanco J, Vargas J, Ortega J

RNA (2020) 26 pp. 2017-2030 [ DOI: doi:10.1261/rna.075846.120 Pubmed: 32989043 ]

Sample:

30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli (strain K12))
16s rrna (499 kDa, RNA from Escherichia coli (strain K12))
30s-inactive-low-mg2+ class b (Complex from Escherichia coli K-12)

[Show more]

Sort by: Download

Showing 1 - 5 of 5. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [5]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: