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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"30S ribosomal protein S4" AND structure_determination_method:"singleparticle" AND citation_journal_name:"CELL REP"

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EMD-0270

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Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Release date: Oct. 23, 2019
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6htq
Q-score: 0.355

Pausch P, Abdelshahid M, Steinchen W, Schafer H, Gratani FL, Freibert SA, Wolz C, Turgay K, Wilson DN, Bange G

Cell Rep (2020) 32 pp. 108157-108157 [ Pubmed: 32937119 DOI: doi:10.1016/j.celrep.2020.108157 ]

Sample:

30s ribosomal protein s10 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s9 (13 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s3 (23 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s12 (14 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s18 (7 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s16 (9 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis (strain 168))
5s ribosomal rna (36 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
50s ribosomal protein l22 (12 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l31 (7 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s14 (7 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l4 (22 kDa, Protein from Bacillus subtilis (strain 168))
P-trna (28 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
Gtp pyrophosphokinase (39 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l23 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l35 (7 kDa, Protein from Bacillus subtilis (strain 168))
Bacillus subtilis subsp. subtilis str. 168 (Complex from Bacillus subtilis subsp. subtilis str. 168)
50s ribosomal protein l13 (16 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s17 (9 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s6 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s8 (14 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s19 (8 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l3 (22 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l24 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l33 1 (5 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l16 (15 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s4 (22 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s20 (9 kDa, Protein from Bacillus subtilis (strain 168))
E-trna (24 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
50s ribosomal protein l21 (11 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l34 (5 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l2 (29 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s11 (11 kDa, Protein from Bacillus subtilis (strain 168))
A/r-trna (24 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
50s ribosomal protein l30 (6 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s15 (10 kDa, Protein from Bacillus subtilis (strain 168))
23s ribosomal rna (948 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
30s ribosomal protein s7 (16 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l6 (19 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l27 (8 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l5 (19 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l29 (7 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis (strain 168))
16s rrna (496 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
30s ribosomal protein s5 (17 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s13 (12 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s2 (25 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l20 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l17 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l28 (6 kDa, Protein from Bacillus subtilis (strain 168))

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EMD-3748

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Cryo-EM reconstruction of the small subunit of the Mycobacterium smegmatis ribosome

Release date: July 12, 2017
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 5o5j
Q-score: 0.46

Hentschel J, Burnside C, Mignot I, Leibundgut M, Boehringer D, Ban N

Cell Rep (2017) 20 pp. 149-160 [ Pubmed: 28683309 DOI: doi:10.1016/j.celrep.2017.06.029 ]

Sample:

30s ribosomal protein s6 (10 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s12 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s18 2 (9 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s7 (17 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s9 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s13 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s3 (30 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s17 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s2 (30 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s4 (23 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l31 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s8 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
16s rrna (495 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
Conserved domain protein (4 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Zinc ion (65 Da, Ligand)
30s ribosomal protein s15 (10 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s16 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s11 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s10 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s small ribosomal subunit (Complex from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s14 type z (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Magnesium ion (24 Da, Ligand)
30s ribosomal protein s19 (10 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s5 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Mrna fragment (1 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s20 (9 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Trna-phe anticodon stem (6 kDa, RNA from Mycobacterium smegmatis str. MC2 155)

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EMD-3751

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Cryo-EM reconstruction of the Mycobacterium smegmatis 70S ribosome

Release date: July 12, 2017
Resolution: 3.31 Å
EM Method: Single-particle
Fitted PDBs: 5o61

Hentschel J, Burnside C, Mignot I, Leibundgut M, Boehringer D, Ban N

Cell Rep (2017) 20 pp. 149-160 [ Pubmed: 28683309 DOI: doi:10.1016/j.celrep.2017.06.029 ]

Sample:

30s ribosomal protein s6 (10 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
P/p-site phe-trna(phe) (24 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l27 (9 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l10 (18 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l29 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s12 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Lsu ribosomal protein l28p (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s7 (17 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s18 2 (9 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l11 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s9 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s13 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l5 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s3 (30 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Phenylalanine (165 Da, Ligand from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l32 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l3 (23 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s17 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s2 (30 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
23s rrna (1 MDa, RNA from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l16 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s4 (23 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l31 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l14 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s8 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
16s rrna (495 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l36 (4 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l20 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Conserved domain protein (4 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l24 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l30 (7 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s15 (10 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Zinc ion (65 Da, Ligand)
50s ribosomal protein l13 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l4 (22 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s16 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l34 (5 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
5s rrna (38 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l25 (22 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l2 (30 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s11 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s10 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l22 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s14 type z (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l23 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l6 (19 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
70s ribosome (Complex from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s19 (10 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l15 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l21 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s5 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l17 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Mrna fragment (1 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein bl37 (2 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l35 (7 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
30s ribosomal protein s20 (9 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l18 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l19 (12 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l9 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l33 1 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)

[Show more]

Sort by: Download

Showing 1 - 3 of 3. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [3]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: