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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

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perform basic research in molecular biology

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offer vital services to scientists in the member states

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scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"30S ribosomal subunit" AND release_date:[2021-01-01T00:00:00Z TO 2021-12-31T23:59:59Z] AND author_name:"Khusainov I"

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EMD-12178

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Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)

Release date: Dec. 8, 2021
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7bgd
Q-score: 0.507

Belinite M, Khusainov I, Soufari H, Marzi S, Romby P, Yusupov M, Hashem Y

Front Mol Biosci (2021) 8 pp. 1022- [ ]

Sample:

Staphylococcus aureus 30s ribosomal subunit in the presence of spermidine (body only) (Complex)
30s ribosomal subunit (Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
30s ribosomal protein s20 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s18 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s4 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
16s ribosomal rna (503 kDa, RNA from Staphylococcus aureus)
30s ribosomal protein s5 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Mrna (Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s17 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s16 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Mrna (10 kDa, RNA from Staphylococcus aureus)
30s ribosomal protein s11 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))

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EMD-12179

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Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only)

Release date: Dec. 8, 2021
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7bge
Q-score: 0.432

Belinite M, Khusainov I, Soufari H, Marzi S, Romby P, Yusupov M, Hashem Y

Front Mol Biosci (2021) 8 pp. 1022- [ ]

Sample:

16s ribosomal rna (503 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
30s ribosomal protein s3 (24 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s10 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
30s ribosomal protein s19 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Staphylococcus aureus 30s ribosomal subunit in presence of spermidine (head only) (Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))

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EMD-12090

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Staphylococcus aureus 30S ribosomal subunit in absence of spermidine with fixed helix 44

Release date: Dec. 1, 2021
Resolution: 10.9 Å
EM Method: Single-particle

Belinite M, Khusainov I, Soufari H, Marzi S, Romby P, Yusupov M, Hashem Y

Front Mol Biosci (2021) 8 pp. 738752-738752 [ DOI: doi:10.3389/fmolb.2021.738752 Pubmed: 34869582 ]

Sample:

Staphylococcus aureus 30s ribosomal subunit in absence of spermidine, class 5 (Complex from Staphylococcus aureus subsp. aureus NCTC 8325)

EMD-12091

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Staphylococcus aureus 30S ribosomal subunit in absence of spermidine with reoriented helix 44

Release date: Dec. 1, 2021
Resolution: 13.76 Å
EM Method: Single-particle

Belinite M, Khusainov I, Soufari H, Marzi S, Romby P, Yusupov M, Hashem Y

Front Mol Biosci (2021) 8 pp. 738752-738752 [ Pubmed: 34869582 DOI: doi:10.3389/fmolb.2021.738752 ]

Sample:

Staphylococcus aureus 30s ribosomal subunit in absence of spermidine, class 5 (Complex from Staphylococcus aureus subsp. aureus NCTC 8325)

EMD-10791

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70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Release date: Jan. 27, 2021
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6yef
Q-score: 0.569

Golubev A, Fatkhullin B, Khusainov I, Jenner L, Gabdulkhakov A, Validov S, Yusupova G, Yusupov M, Usachev K

FEBS Lett (2020) 594 pp. 3551-3567 [ Pubmed: 32852796 DOI: doi:10.1002/1873-3468.13915 ]

Sample:

30s ribosomal protein s18 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
70s ribosome (Complex)
50s ribosomal protein l33 2 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
E-site trna (Cellular component from Escherichia coli DH5[alpha])
23s rrna (946 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
23s and 5s rrna, 50s ribosomal subunit (Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l27 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s5 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
P-site trna (25 kDa, RNA from Escherichia coli DH5[alpha])
50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l5 (20 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s16 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Mrna (Complex from synthetic construct)
50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Potassium ion (39 Da, Ligand)
50s ribosomal protein l31 type b (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
16s rrna, 30s ribosomal subunit (Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
30s ribosomal protein s11 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
16s rrna (503 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l25 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s4 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s19 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l29 (8 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l16 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Ribosomal protein us10 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
30s ribosomal protein s17 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
5s rrna (36 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
30s ribosomal protein s3 (24 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s20 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s14 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Mrna (9 kDa, RNA from synthetic construct)
50s ribosomal protein l2 (30 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))

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EMD-23052

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Staphylococcus aureus 30S ribosomal subunit in presence of spermidine

Release date: Jan. 27, 2021
Resolution: 3.75 Å
EM Method: Single-particle
Fitted PDBs: 7kwg
Q-score: 0.397

Belinite M, Khusainov I, Soufari H, Marzi S, Romby P, Yusupov M, Hashem Y

Front Mol Biosci (2021) 8 pp. 738752-738752 [ DOI: doi:10.3389/fmolb.2021.738752 Pubmed: 34869582 ]

Sample:

30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325 / PS 47))
30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325 / PS 47))
30s ribosomal protein s17 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325 / PS 47))
30s ribosomal protein s20 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325 / PS 47))
16s ribosomal rna (503 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
30s ribosomal protein s11 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325 / PS 47))
30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325 / PS 47))
30s ribosomal protein s3 (24 kDa, Protein from Staphylococcus aureus (strain NCTC 8325 / PS 47))
Staphylococcus aureus 30s ribosomal subunit in presence of spermidine (Complex from Staphylococcus aureus (strain NCTC 8325 / PS 47))
30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325 / PS 47))
30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus (strain NCTC 8325 / PS 47))
30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325 / PS 47))
30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325 / PS 47))
30s ribosomal protein s16 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325 / PS 47))
Mrna (10 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325 / PS 47))
30s ribosomal protein s4 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325 / PS 47))
30s ribosomal protein s10 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325 / PS 47))
30s ribosomal protein s18 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325 / PS 47))
30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325 / PS 47))
30s ribosomal protein s5 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325 / PS 47))
30s ribosomal protein s19 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325 / PS 47))

[Show more]

Sort by: Download

Showing 1 - 6 of 6. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [6]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: