Small subunit of yeast mitochondrial ribosome in complex with METTL17/Rsm22.
Resolution: 2.57 Å
EM Method: Single-particle
Fitted PDBs: 8om2
Q-score: 0.602
Ast T, Itoh Y, Sadre S, McCoy JG, Namkoong G, Wengrod JC, Chicherin I, Joshi PR, Kamenski P, Suess DLM, Amunts A, Mootha VK
Mol Cell (2024) 84 pp. 359- [ DOI: doi:10.1016/j.molcel.2023.12.016 Pubmed: 38199006 ]
- Probable s-adenosyl-l-methionine-dependent rna methyltransferase rsm22, mitochondrial (72 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp21, mitochondrial (20 kDa, Protein from Saccharomyces cerevisiae)
- Potassium ion (39 Da, Ligand)
- Water (18 Da, Ligand)
- Small subunit of mitochondrial ribosome in complex with mettl17/rsm22 (Complex from Saccharomyces cerevisiae)
- 37s ribosomal protein s18, mitochondrial (24 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s9, mitochondrial (31 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s26, mitochondrial (30 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s5, mitochondrial (34 kDa, Protein from Saccharomyces cerevisiae)
- Ribosomal protein var1, mitochondrial (47 kDa, Protein from Saccharomyces cerevisiae)
- 3-hydroxyisobutyryl-coa hydrolase, mitochondrial (56 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein nam9, mitochondrial (56 kDa, Protein from Saccharomyces cerevisiae)
- Mitochondrial 37s ribosomal protein s27 (12 kDa, Protein from Saccharomyces cerevisiae)
- 15s mitochondrial rrna (528 kDa, RNA from Saccharomyces cerevisiae)
- 37s ribosomal protein sws2, mitochondrial (16 kDa, Protein from Saccharomyces cerevisiae)
- Iron/sulfur cluster (351 Da, Ligand)
- 37s ribosomal protein s17, mitochondrial (27 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s7, mitochondrial (27 kDa, Protein from Saccharomyces cerevisiae)
- Mitochondrial mrna-processing protein cox24 (12 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 37s ribosomal protein s24, mitochondrial (37 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s12, mitochondrial (16 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s19, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s10, mitochondrial (23 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp10, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp51, mitochondrial (39 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s16, mitochondrial (13 kDa, Protein from Saccharomyces cerevisiae)
- Protein fyv4, mitochondrial (15 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- 37s ribosomal protein s35, mitochondrial (39 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp17, mitochondrial (15 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s25, mitochondrial (30 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp4, mitochondrial (44 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s23, mitochondrial (50 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein rsm18, mitochondrial (15 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp1, mitochondrial (36 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp13, mitochondrial (39 kDa, Protein from Saccharomyces cerevisiae)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- 37s ribosomal protein mrp2, mitochondrial (13 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s28, mitochondrial (33 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s8, mitochondrial (17 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein pet123, mitochondrial (36 kDa, Protein from Saccharomyces cerevisiae)
Small subunit of yeast mitochondrial ribosome in complex with IF3/Aim23.
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 8om3
Q-score: 0.564
Ast T, Itoh Y, Sadre S, McCoy JG, Namkoong G, Wengrod JC, Chicherin I, Joshi PR, Kamenski P, Suess DLM, Amunts A, Mootha VK
Mol Cell (2024) 84 pp. 359- [ DOI: doi:10.1016/j.molcel.2023.12.016 Pubmed: 38199006 ]
- Potassium ion (39 Da, Ligand)
- 37s ribosomal protein s5, mitochondrial (34 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s28, mitochondrial (33 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp51, mitochondrial (39 kDa, Protein from Saccharomyces cerevisiae)
- Ribosomal protein var1, mitochondrial (47 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s24, mitochondrial (37 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp4, mitochondrial (44 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp17, mitochondrial (15 kDa, Protein from Saccharomyces cerevisiae)
- Protein fyv4, mitochondrial (15 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s19, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein nam9, mitochondrial (56 kDa, Protein from Saccharomyces cerevisiae)
- Mitochondrial mrna-processing protein cox24 (12 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s16, mitochondrial (13 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp10, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp13, mitochondrial (39 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp1, mitochondrial (36 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s35, mitochondrial (39 kDa, Protein from Saccharomyces cerevisiae)
- 15s mitochondrial rrna (528 kDa, RNA from Saccharomyces cerevisiae)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 37s ribosomal protein s18, mitochondrial (24 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s17, mitochondrial (27 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein pet123, mitochondrial (36 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s23, mitochondrial (50 kDa, Protein from Saccharomyces cerevisiae)
- Mitochondrial 37s ribosomal protein s27 (12 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein rsm18, mitochondrial (15 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s26, mitochondrial (30 kDa, Protein from Saccharomyces cerevisiae)
- Altered inheritance of mitochondria protein 23, mitochondrial (42 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s8, mitochondrial (17 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s12, mitochondrial (16 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s10, mitochondrial (23 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp2, mitochondrial (13 kDa, Protein from Saccharomyces cerevisiae)
- Small subunit of mitochondrial ribosome in complex with if3/aim23 (Complex from Saccharomyces cerevisiae)
- Water (18 Da, Ligand)
- 37s ribosomal protein s7, mitochondrial (27 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s9, mitochondrial (31 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp21, mitochondrial (20 kDa, Protein from Saccharomyces cerevisiae)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- 3-hydroxyisobutyryl-coa hydrolase, mitochondrial (56 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein sws2, mitochondrial (16 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s25, mitochondrial (30 kDa, Protein from Saccharomyces cerevisiae)
Small subunit of yeast mitochondrial ribosome.
Resolution: 2.32 Å
EM Method: Single-particle
Fitted PDBs: 8om4
Q-score: 0.654
Ast T, Itoh Y, Sadre S, McCoy JG, Namkoong G, Wengrod JC, Chicherin I, Joshi PR, Kamenski P, Suess DLM, Amunts A, Mootha VK
Mol Cell (2024) 84 pp. 359- [ DOI: doi:10.1016/j.molcel.2023.12.016 Pubmed: 38199006 ]
- Potassium ion (39 Da, Ligand)
- 37s ribosomal protein s5, mitochondrial (34 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s28, mitochondrial (33 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp51, mitochondrial (39 kDa, Protein from Saccharomyces cerevisiae)
- Ribosomal protein var1, mitochondrial (47 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s24, mitochondrial (37 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp4, mitochondrial (44 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp17, mitochondrial (15 kDa, Protein from Saccharomyces cerevisiae)
- Protein fyv4, mitochondrial (15 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s19, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein nam9, mitochondrial (56 kDa, Protein from Saccharomyces cerevisiae)
- Mitochondrial mrna-processing protein cox24 (12 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s16, mitochondrial (13 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp10, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae)
- Small subunit of mitochondrial ribosome (Complex from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp1, mitochondrial (36 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp13, mitochondrial (39 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s35, mitochondrial (39 kDa, Protein from Saccharomyces cerevisiae)
- 15s mitochondrial rrna (528 kDa, RNA from Saccharomyces cerevisiae)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 37s ribosomal protein s18, mitochondrial (24 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s17, mitochondrial (27 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein pet123, mitochondrial (36 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s23, mitochondrial (50 kDa, Protein from Saccharomyces cerevisiae)
- Mitochondrial 37s ribosomal protein s27 (12 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein rsm18, mitochondrial (15 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s26, mitochondrial (30 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s8, mitochondrial (17 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s12, mitochondrial (16 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s10, mitochondrial (23 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp2, mitochondrial (13 kDa, Protein from Saccharomyces cerevisiae)
- Water (18 Da, Ligand)
- 37s ribosomal protein s7, mitochondrial (27 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s9, mitochondrial (31 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp21, mitochondrial (20 kDa, Protein from Saccharomyces cerevisiae)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- 3-hydroxyisobutyryl-coa hydrolase, mitochondrial (56 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein sws2, mitochondrial (16 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s25, mitochondrial (30 kDa, Protein from Saccharomyces cerevisiae)