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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"40S ribosomal protein S17" AND release_date:[2023-01-01T00:00:00Z TO 2023-12-31T23:59:59Z] AND author_orcid:"0000-0001-9127-4477"

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EMD-14479

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Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-1 conformation

Release date: April 12, 2023
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7z3n
Q-score: 0.412

Kisonaite M, Wild K, Lapouge K, Gese GV, Kellner N, Hurt E, Sinning I

Nat Struct Mol Biol (2023) 30 pp. 670-677 [ DOI: doi:10.1038/s41594-023-00973-1 Pubmed: 37081320 ]

Sample:

60s ribosomal protein l7-like protein (28 kDa, Protein from Thermochaetoides thermophila DSM 1495)
5s rrna (38 kDa, RNA from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s20-like protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s10-like protein (18 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l2-like protein (27 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative guanine nucleotide-binding protein (35 kDa, Protein from Thermochaetoides thermophila DSM 1495)
18s rrna (578 kDa, RNA from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l28-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s4 (29 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l5-like protein (35 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Habp4_pai-rbp1 domain-containing protein (32 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l33-like protein (12 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s26 (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l37 (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative 60s ribosomal protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l20 (20 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s5-like protein (23 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l29 (7 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Nascent chain (2 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s9-like protein (22 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s8 (23 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein us14 (6 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l36 (12 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative ribosomal protein (20 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s27a-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s28-like protein (7 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l8 (29 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Chaetomium thermophilum rac on 80s ribosome (Complex from Chaetomium thermophilum var. thermophilum DSM 1495)
Ribosomal protein el39 (6 kDa, Protein from Thermochaetoides thermophila DSM 1495)
26s rrna (1 MDa, RNA from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l17-like protein (21 kDa, Protein from Thermochaetoides thermophila DSM 1495)
El24 (18 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l16-like protein (23 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s6 (27 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l18-like protein (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein s27-like protein (8 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l43-like protein (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l22-like protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
El38 (9 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s1 (29 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l41-a (3 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l44-like protein (12 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative ribosomal protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l32-like protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l15 (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s22-like protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l4-like protein (39 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s11-like protein (18 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l14-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l19 (22 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s3-like protein (27 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s23-like protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s13-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l21-like protein (18 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Dolichyl-diphosphooligosaccharide--protein glycotransferase (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l30-like protein (11 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s7 (23 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l6 (22 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s acidic ribosomal protein p0 (33 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative heat shock protein (62 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s30 (6 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Magnesium ion (24 Da, Ligand)
Putative ribosome associated protein (51 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l3-like protein (44 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s16-like protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l10-like protein (25 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s25 (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l27 (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative ribosomal protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l34-like protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s14-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l25-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
5.8s rrna (50 kDa, RNA from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s2-like protein (28 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s21-like protein (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l26-like protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ul6 (21 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s19-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Zinc ion (65 Da, Ligand)
Putative 60s ribosomal protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Adenosine-5'-triphosphate (507 Da, Ligand)
40s ribosomal protein s12 (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l23-like protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l12-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s15-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l13 (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s17-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s0 (31 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s24 (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)

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EMD-14480

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Cryo-EM structure of the ribosome-associated RAC complex on the 80S ribosome - RAC-2 conformation

Release date: April 12, 2023
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7z3o
Q-score: 0.462

Kisonaite M, Wild K, Lapouge K, Gese GV, Kellner N, Hurt E, Sinning I

Nat Struct Mol Biol (2023) 30 pp. 670-677 [ DOI: doi:10.1038/s41594-023-00973-1 Pubmed: 37081320 ]

Sample:

60s ribosomal protein l7-like protein (28 kDa, Protein from Thermochaetoides thermophila DSM 1495)
5s rrna (38 kDa, RNA from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s20-like protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s10-like protein (18 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l2-like protein (27 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative guanine nucleotide-binding protein (35 kDa, Protein from Thermochaetoides thermophila DSM 1495)
18s rrna (578 kDa, RNA from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l28-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s4 (29 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l5-like protein (35 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Habp4_pai-rbp1 domain-containing protein (32 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l33-like protein (12 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s26 (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l37 (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative 60s ribosomal protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l20 (20 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s5-like protein (23 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l29 (7 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Nascent chain (2 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s9-like protein (22 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s8 (23 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein us14 (6 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l36 (12 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative ribosomal protein (20 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s27a-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s28-like protein (7 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l8 (29 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Chaetomium thermophilum rac on 80s ribosome (Complex from Chaetomium thermophilum var. thermophilum DSM 1495)
Ribosomal protein el39 (6 kDa, Protein from Thermochaetoides thermophila DSM 1495)
26s rrna (1 MDa, RNA from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l17-like protein (21 kDa, Protein from Thermochaetoides thermophila DSM 1495)
El24 (18 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l16-like protein (23 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s6 (27 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l18-like protein (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein s27-like protein (8 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l43-like protein (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l22-like protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
El38 (9 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s1 (29 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l41-a (3 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l44-like protein (12 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative ribosomal protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l32-like protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l15 (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s22-like protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l4-like protein (39 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s11-like protein (18 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l14-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l19 (22 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s3-like protein (27 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s23-like protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s13-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l21-like protein (18 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Dolichyl-diphosphooligosaccharide--protein glycotransferase (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l30-like protein (11 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s7 (23 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l6 (22 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s acidic ribosomal protein p0 (33 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative heat shock protein (62 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s30 (6 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Magnesium ion (24 Da, Ligand)
Putative ribosome associated protein (51 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l3-like protein (44 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s16-like protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l10-like protein (25 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s25 (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l27 (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Putative ribosomal protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ribosomal protein l34-like protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s14-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l25-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
5.8s rrna (50 kDa, RNA from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s2-like protein (28 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s21-like protein (10 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l26-like protein (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Ul6 (21 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s19-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Zinc ion (65 Da, Ligand)
Putative 60s ribosomal protein (13 kDa, Protein from Thermochaetoides thermophila DSM 1495)
Adenosine-5'-triphosphate (507 Da, Ligand)
40s ribosomal protein s12 (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l23-like protein (14 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l12-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s15-like protein (17 kDa, Protein from Thermochaetoides thermophila DSM 1495)
60s ribosomal protein l13 (24 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s17-like protein (16 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s0 (31 kDa, Protein from Thermochaetoides thermophila DSM 1495)
40s ribosomal protein s24 (15 kDa, Protein from Thermochaetoides thermophila DSM 1495)

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EMDB [2]

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Shell (Unix-based) Batch (Windows-based)

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