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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"50S ribosomal protein L33" AND release_date:[2018-01-01T00:00:00Z TO 2018-12-31T23:59:59Z] AND xref_links:"pdb" AND natural_source_ncbi_code:"562" AND author_name:"Huter P"

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EMD-0176

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Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Release date: Aug. 29, 2018
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6ha1
Q-score: 0.48

Crowe-McAuliffe C, Graf M, Huter P, Takada H, Abdelshahid M, Novacek J, Murina V, Atkinson GC, Hauryliuk V, Wilson DN

PNAS (2018) 115 pp. 8978-8983 [ Pubmed: 30126986 DOI: doi:10.1073/pnas.1808535115 ]

Sample:

30s ribosomal protein s17 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s11 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l27 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s9 (14 kDa, Protein from Bacillus subtilis (strain 168))
Telithromycin (812 Da, Ligand)
50s ribosomal protein l6 (19 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s10 (11 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l31 (7 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l28 (6 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s14 (7 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s2 (28 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l33 1 (5 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s18 (8 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l24 (11 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s7 (17 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s6 (11 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s19 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s15 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l4 (22 kDa, Protein from Bacillus subtilis (strain 168))
70s ribosome (Complex from Bacillus subtilis (strain 168))
30s ribosomal protein s13 (13 kDa, Protein from Bacillus subtilis (strain 168))
23s ribosomal rna (949 kDa, RNA from Bacillus subtilis (strain 168))
50s ribosomal protein l22 (12 kDa, Protein from Bacillus subtilis (strain 168))
16s ribosomal rna (503 kDa, RNA from Bacillus subtilis (strain 168))
50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l17 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l23 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis (strain 168))
Mrna (872 Da, RNA from Bacillus subtilis (strain 168))
50s ribosomal protein l5 (20 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l35 (7 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l30 (6 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s16 (10 kDa, Protein from Bacillus subtilis (strain 168))
70s ribosome with p-trna translating the ermd stalling peptide and complexed with telithromycin (Complex)
50s ribosomal protein l20 (13 kDa, Protein from Bacillus subtilis (strain 168))
Trna (Complex from Escherichia coli)
30s ribosomal protein s3 (24 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s8 (14 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l13 (16 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l21 (11 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l34 (5 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s4 (22 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l16 (16 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l29 (7 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s12 (15 kDa, Protein from Bacillus subtilis (strain 168))
Ermd stalling peptide (Complex from Bacillus subtilis (strain 168))
50s ribosomal protein l3 (22 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s5 (17 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l2 (30 kDa, Protein from Bacillus subtilis (strain 168))
5s ribosomal rna (36 kDa, RNA from Bacillus subtilis (strain 168))
30s ribosomal protein s20 (9 kDa, Protein from Bacillus subtilis (strain 168))
P-trna (28 kDa, RNA from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis (strain 168))

[Show more]

EMD-0177

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Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome

Release date: Aug. 29, 2018
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6ha8
Q-score: 0.389

Crowe-McAuliffe C, Graf M, Huter P, Takada H, Abdelshahid M, Novacek J, Murina V, Atkinson GC, Hauryliuk V, Wilson DN

PNAS (2018) 115 pp. 8978-8983 [ Pubmed: 30126986 DOI: doi:10.1073/pnas.1808535115 ]

Sample:

30s ribosomal protein s17 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s11 (13 kDa, Protein from Bacillus subtilis (strain 168))
5s rrna (36 kDa, RNA from Bacillus subtilis (strain 168))
50s ribosomal protein l27 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s9 (14 kDa, Protein from Bacillus subtilis (strain 168))
Telithromycin (812 Da, Ligand)
Complex of translating 70s ribosome with abcf antibiotic resistance protein vmlr (Complex)
50s ribosomal protein l6 (19 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s10 (11 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l1 (25 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l28 (6 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s14 (7 kDa, Protein from Bacillus subtilis (strain 168))
23s rrna (949 kDa, RNA from Bacillus subtilis (strain 168))
30s ribosomal protein s2 (28 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l33 1 (5 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s18 (8 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l24 (11 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s7 (17 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis (strain 168))
Adenosine-5'-triphosphate (507 Da, Ligand)
50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s19 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s15 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l4 (22 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s13 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l22 (12 kDa, Protein from Bacillus subtilis (strain 168))
Nucleotide-binding protein expz (Complex from Bacillus subtilis subsp. subtilis str. 168)
50s ribosomal protein l31 (7 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis (strain 168))
Mrna (872 Da, RNA from Bacillus subtilis subsp. subtilis str. 168)
50s ribosomal protein l17 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l23 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis (strain 168))
Ribosome (Complex from Bacillus subtilis subsp. subtilis str. 168)
50s ribosomal protein l5 (20 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l35 (7 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l30 (6 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s16 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l20 (13 kDa, Protein from Bacillus subtilis (strain 168))
Trna (Complex from Escherichia coli)
30s ribosomal protein s3 (24 kDa, Protein from Bacillus subtilis (strain 168))
Nucleotide-binding protein expz (60 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l13 (16 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l21 (11 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l34 (5 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s4 (22 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l16 (16 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l29 (7 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s8 (14 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s12 (15 kDa, Protein from Bacillus subtilis (strain 168))
P-trna(leu) (24 kDa, RNA from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s5 (17 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l2 (30 kDa, Protein from Bacillus subtilis (strain 168))
16s rrna (503 kDa, RNA from Bacillus subtilis (strain 168))
30s ribosomal protein s6 (11 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s20 (9 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis (strain 168))

[Show more]

EMD-0080

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Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Release date: Aug. 22, 2018
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6gxm
Q-score: 0.319

Graf M, Huter P, Maracci C, Peterek M, Rodnina MV, Wilson DN

Nat Commun (2018) 9 pp. 3053-3053 [ DOI: doi:10.1038/s41467-018-05465-1 Pubmed: 30076302 ]

Sample:

50s ribosomal protein l10 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s21 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
Mrna (2 kDa, RNA from Escherichia coli)
30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
Peptide chain release factor rf1 (27 kDa, Protein from Escherichia coli)
Peptide chain release factor rf3 (59 kDa, Protein from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
5s ribosomal rna (38 kDa, RNA from Escherichia coli)
50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
16s ribosomal rna (498 kDa, RNA from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli)
Apidaecin (1 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
In-vitro reconstitution of e. coli 70s ribosomes with rf3-gdpcp, rf1(gaq) and pint-fmet-trna (Complex from Escherichia coli)
30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
23s ribosomal rna (941 kDa, RNA from Escherichia coli)
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli)
50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
Fmet-trna (24 kDa, RNA from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)

[Show more]

EMD-0076

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Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I)

Release date: Aug. 15, 2018
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6gwt
Q-score: 0.33

Graf M, Huter P, Maracci C, Peterek M, Rodnina MV, Wilson DN

Nat Commun (2018) 9 pp. 3053-3053 [ DOI: doi:10.1038/s41467-018-05465-1 Pubmed: 30076302 ]

Sample:

50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
Peptide chain release factor 3 (59 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
Fmet-trna (24 kDa, RNA from Escherichia coli)
50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s21 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
In-vitro reconstitution of e. coli 70s ribosomes with rf3-gdpcp, rf1(gaq) and pint-fmet-trna (Complex)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
Peptide chain release factor rf1 (27 kDa, Protein from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
Ribosome (Complex from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
5s ribosomal rna (38 kDa, RNA from Escherichia coli)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
16s ribosomal rna (498 kDa, RNA from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
Apidaecin (1 kDa, Protein from Apis mellifera)
50s ribosomal protein l10 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli)
30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli)
Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
Mrna (Complex from Escherichia coli)
Mrna (2 kDa, RNA from Escherichia coli)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
23s ribosomal rna (941 kDa, RNA from Escherichia coli)
50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
Release factors (Complex from Escherichia coli)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
Apidaecin (Complex from Apis mellifera)

[Show more]

EMD-0081

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Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)

Release date: Aug. 15, 2018
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6gxn
Q-score: 0.307

Graf M, Huter P, Maracci C, Peterek M, Rodnina MV, Wilson DN

Nat Commun (2018) 9 pp. 3053-3053 [ DOI: doi:10.1038/s41467-018-05465-1 Pubmed: 30076302 ]

Sample:

30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
70s ribosome (Complex from Escherichia coli)
Peptide chain release factor rf1 (39 kDa, Protein from Escherichia coli)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
Mrna (2 kDa, RNA from Escherichia coli)
30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli)
30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
5s ribosomal rna (38 kDa, RNA from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
Peptide chain release factor rf3 (59 kDa, Protein from Escherichia coli)
Apidaecin (1 kDa, Protein from Apis mellifera)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
Apidaecin (Complex from Apis mellifera)
50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
Fmet-trna (24 kDa, RNA from Escherichia coli)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
23s ribosomal rna (941 kDa, RNA from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l10 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
16s ribosomal rna (498 kDa, RNA from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
30s ribosomal protein s21 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
In-vitro reconstitution of e. coli 70s ribosomes with rf3-gdpcp, rf1(gaq) and pint-fmet-trna (Complex)
30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)

[Show more]

EMD-0082

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Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)

Release date: Aug. 15, 2018
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6gxo
Q-score: 0.308

Graf M, Huter P, Maracci C, Peterek M, Rodnina MV, Wilson DN

Nat Commun (2018) 9 pp. 3053-3053 [ DOI: doi:10.1038/s41467-018-05465-1 Pubmed: 30076302 ]

Sample:

50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s21 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
In-vitro reconstitution of e. coli 70s ribosomes with rf3-gdpcp, rf1(gaq) and pint-fmet-trna (Complex)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
Peptide chain release factor rf1 (27 kDa, Protein from Escherichia coli)
Peptide chain release factor rf3 (59 kDa, Protein from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
5s ribosomal rna (38 kDa, RNA from Escherichia coli)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
16s ribosomal rna (498 kDa, RNA from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli)
Fmet-trna (24 kDa, RNA from Escherichia coli)
50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
Apidaecin (1 kDa, Protein from Apis mellifera)
50s ribosomal protein l10 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli)
30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli)
Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
Mrna (Complex from Escherichia coli)
Mrna (2 kDa, RNA from Escherichia coli)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
23s ribosomal rna (941 kDa, RNA from Escherichia coli)
50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
70s ribosome (Complex from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
Apidaecin (Complex from Apis mellifera)

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EMD-0083

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Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Release date: Aug. 15, 2018
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6gxp
Q-score: 0.217

Graf M, Huter P, Maracci C, Peterek M, Rodnina MV, Wilson DN

Nat Commun (2018) 9 pp. 3053-3053 [ DOI: doi:10.1038/s41467-018-05465-1 Pubmed: 30076302 ]

Sample:

30s ribosomal protein s11 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
70s ribosome (Complex from Escherichia coli)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s21 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
5s ribosomal rna (38 kDa, RNA from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
Peptide chain release factor rf3 (59 kDa, Protein from Escherichia coli)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
Apidaecin (Complex from Apis mellifera)
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
Apidaecin (1 kDa, Protein from Apis mellifera)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
23s ribosomal rna (941 kDa, RNA from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli)
Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
50s ribosomal protein l10 (14 kDa, Protein from Escherichia coli)
16s ribosomal rna (498 kDa, RNA from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli)
30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
In-vitro reconstitution of e. coli 70s ribosomes with rf3-gdpcp, rf1(gaq) and pint-fmet-trna (Complex)
30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)

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