Electron Microscopy Data Bank

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sample_name:"50S ribosomal protein L33" AND release_date:[2018-01-01T00:00:00Z TO 2018-12-31T23:59:59Z] AND xref_links:"pdb" AND sample_type:"rna" AND software_ft:"GCTF"

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EMD-0322

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TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel

Release date: Dec. 5, 2018
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6i0y
Q-score: 0.305

Tian P, Steward A, Kudva R, Su T, Shilling PJ, Nickson AA, Hollins JJ, Beckmann R, von Heijne G, Clarke J, Best RB

PNAS (2018) 115 pp. E11284-E11293 [ Pubmed: 30413621 DOI: doi:10.1073/pnas.1810523115 ]

Sample:

Tryptophanase operon leader peptide (Complex from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
Tryptophanase operon leader peptide (2 kDa, Protein from Escherichia coli)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
Titin nascent chain (Complex from Homo sapiens)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
Titin (9 kDa, Protein from Homo sapiens)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
5s ribosomal rna (38 kDa, RNA from Escherichia coli)
Proline trna (24 kDa, RNA from Escherichia coli)
50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
Water (18 Da, Ligand)
50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l7/l12 (12 kDa, Protein from Escherichia coli)
Ribosome (Complex from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l9 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
23s ribosomal rna (941 kDa, RNA from Escherichia coli)
50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
Tnac-stalled ribosome complex with the titin i27 domain folding close to the ribosomal exit tunnel (Complex)
Tryptophan (204 Da, Ligand)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)

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EMD-0139

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Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Release date: Sept. 5, 2018
Resolution: 7.9 Å
EM Method: Single-particle
Fitted PDBs: 6h58
Q-score: 0.122

Beckert B, Turk M, Czech A, Berninghausen O, Beckmann R, Ignatova Z, Plitzko JM, Wilson DN

Nat Microbiol (2018) 3 pp. 1115-1121 [ DOI: doi:10.1038/s41564-018-0237-0 Pubmed: 30177741 ]

Sample:

50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli BW25113)
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli BW25113)
30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli BW25113)
Ribosome modulation factor (6 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli BW25113)
Structure of a hibernating 100s ribosome reveals an inactive conformation of the ribosomal protein s1 (Complex from Escherichia coli BW25113)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli BW25113)
30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli BW25113)
30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli BW25113)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli BW25113)
5s ribosomal rna (38 kDa, RNA from Escherichia coli BW25113)
Ribosome hibernation promoting factor (10 kDa, Protein from Escherichia coli BW25113)
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli BW25113)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli BW25113)
23s ribosomal rna (941 kDa, RNA from Escherichia coli BW25113)
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli BW25113)
30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli BW25113)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli BW25113)
16s ribosomal rna (498 kDa, RNA from Escherichia coli BW25113)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli BW25113)
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli BW25113)
30s ribosomal protein s1 (61 kDa, Protein from Escherichia coli BW25113)
30s ribosomal protein s7 (18 kDa, Protein from Escherichia coli BW25113)
Trna mixture (24 kDa, RNA from Escherichia coli BW25113)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli BW25113)
30s ribosomal protein s2 (25 kDa, Protein from Escherichia coli BW25113)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli BW25113)
30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli BW25113)
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli BW25113)
30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli BW25113)
30s ribosomal protein s21 (7 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli BW25113)
30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli BW25113)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli BW25113)

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EMD-0176

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Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Release date: Aug. 29, 2018
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6ha1
Q-score: 0.48

Crowe-McAuliffe C, Graf M, Huter P, Takada H, Abdelshahid M, Novacek J, Murina V, Atkinson GC, Hauryliuk V, Wilson DN

PNAS (2018) 115 pp. 8978-8983 [ Pubmed: 30126986 DOI: doi:10.1073/pnas.1808535115 ]

Sample:

30s ribosomal protein s17 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s11 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l27 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s9 (14 kDa, Protein from Bacillus subtilis (strain 168))
Telithromycin (812 Da, Ligand)
50s ribosomal protein l6 (19 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s10 (11 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l31 (7 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l28 (6 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s14 (7 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s2 (28 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l33 1 (5 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s18 (8 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l24 (11 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s7 (17 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s6 (11 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s19 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s15 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l4 (22 kDa, Protein from Bacillus subtilis (strain 168))
70s ribosome (Complex from Bacillus subtilis (strain 168))
30s ribosomal protein s13 (13 kDa, Protein from Bacillus subtilis (strain 168))
23s ribosomal rna (949 kDa, RNA from Bacillus subtilis (strain 168))
50s ribosomal protein l22 (12 kDa, Protein from Bacillus subtilis (strain 168))
16s ribosomal rna (503 kDa, RNA from Bacillus subtilis (strain 168))
50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l17 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l23 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis (strain 168))
Mrna (872 Da, RNA from Bacillus subtilis (strain 168))
50s ribosomal protein l5 (20 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l35 (7 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l30 (6 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s16 (10 kDa, Protein from Bacillus subtilis (strain 168))
70s ribosome with p-trna translating the ermd stalling peptide and complexed with telithromycin (Complex)
50s ribosomal protein l20 (13 kDa, Protein from Bacillus subtilis (strain 168))
Trna (Complex from Escherichia coli)
30s ribosomal protein s3 (24 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s8 (14 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l13 (16 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l21 (11 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l34 (5 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s4 (22 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l16 (16 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l29 (7 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s12 (15 kDa, Protein from Bacillus subtilis (strain 168))
Ermd stalling peptide (Complex from Bacillus subtilis (strain 168))
50s ribosomal protein l3 (22 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s5 (17 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l2 (30 kDa, Protein from Bacillus subtilis (strain 168))
5s ribosomal rna (36 kDa, RNA from Bacillus subtilis (strain 168))
30s ribosomal protein s20 (9 kDa, Protein from Bacillus subtilis (strain 168))
P-trna (28 kDa, RNA from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis (strain 168))

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EMD-0177

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Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome

Release date: Aug. 29, 2018
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6ha8
Q-score: 0.389

Crowe-McAuliffe C, Graf M, Huter P, Takada H, Abdelshahid M, Novacek J, Murina V, Atkinson GC, Hauryliuk V, Wilson DN

PNAS (2018) 115 pp. 8978-8983 [ Pubmed: 30126986 DOI: doi:10.1073/pnas.1808535115 ]

Sample:

30s ribosomal protein s17 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s11 (13 kDa, Protein from Bacillus subtilis (strain 168))
5s rrna (36 kDa, RNA from Bacillus subtilis (strain 168))
50s ribosomal protein l27 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s9 (14 kDa, Protein from Bacillus subtilis (strain 168))
Telithromycin (812 Da, Ligand)
Complex of translating 70s ribosome with abcf antibiotic resistance protein vmlr (Complex)
50s ribosomal protein l6 (19 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s10 (11 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l1 (25 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l28 (6 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s14 (7 kDa, Protein from Bacillus subtilis (strain 168))
23s rrna (949 kDa, RNA from Bacillus subtilis (strain 168))
30s ribosomal protein s2 (28 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l33 1 (5 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s18 (8 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l24 (11 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s7 (17 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis (strain 168))
Adenosine-5'-triphosphate (507 Da, Ligand)
50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s19 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s15 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l4 (22 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s13 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l22 (12 kDa, Protein from Bacillus subtilis (strain 168))
Nucleotide-binding protein expz (Complex from Bacillus subtilis subsp. subtilis str. 168)
50s ribosomal protein l31 (7 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis (strain 168))
Mrna (872 Da, RNA from Bacillus subtilis subsp. subtilis str. 168)
50s ribosomal protein l17 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l23 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis (strain 168))
Ribosome (Complex from Bacillus subtilis subsp. subtilis str. 168)
50s ribosomal protein l5 (20 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l35 (7 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l30 (6 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s16 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l20 (13 kDa, Protein from Bacillus subtilis (strain 168))
Trna (Complex from Escherichia coli)
30s ribosomal protein s3 (24 kDa, Protein from Bacillus subtilis (strain 168))
Nucleotide-binding protein expz (60 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l13 (16 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l21 (11 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l34 (5 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s4 (22 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l16 (16 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l29 (7 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s8 (14 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s12 (15 kDa, Protein from Bacillus subtilis (strain 168))
P-trna(leu) (24 kDa, RNA from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s5 (17 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l2 (30 kDa, Protein from Bacillus subtilis (strain 168))
16s rrna (503 kDa, RNA from Bacillus subtilis (strain 168))
30s ribosomal protein s6 (11 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s20 (9 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis (strain 168))

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EMD-8826

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70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)

Release date: May 2, 2018
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 5wf0
Q-score: 0.413

Fislage M, Zhang J, Brown ZP, Mandava CS, Sanyal S, Ehrenberg M, Frank J

Nucleic Acids Res (2018) 46 pp. 5861-5874 [ Pubmed: 29733411 DOI: doi:10.1093/nar/gky346 ]

Sample:

30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
5s rrna (38 kDa, RNA from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l4 (21 kDa, Protein from Escherichia coli)
Elongation factor tu 2 (43 kDa, Protein from Escherichia coli O139:H28 (strain E24377A / ETEC))
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
Guanosine-5'-triphosphate (523 Da, Ligand)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
Mrna (3 kDa, RNA from Escherichia coli)
30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
Phenylalanine (165 Da, Ligand)
Potassium ion (39 Da, Ligand)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 1 (4 kDa, Protein from Escherichia coli)
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
70s ribosome-ef-tu h84a complex with gtp and near-cognate trna (complex 1) (Complex from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
16s rrna (499 kDa, RNA from Escherichia coli)
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
Trna-fmet (24 kDa, RNA from Escherichia coli)
Water (18 Da, Ligand)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
23s rrna (941 kDa, RNA from Escherichia coli)
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l13 (15 kDa, Protein from Escherichia coli)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli)
Phe-trna-phe (24 kDa, RNA from Escherichia coli)
30s ribosomal protein s21 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
50s ribosomal protein l10 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli)
30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
N-formylmethionine (177 Da, Ligand)
50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)

[Show more]

EMD-8828

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70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)

Release date: May 2, 2018
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 5wfk
Q-score: 0.385

Fislage M, Zhang J, Brown ZP, Mandava CS, Sanyal S, Ehrenberg M, Frank J

Nucleic Acids Res (2018) 46 pp. 5861-5874 [ Pubmed: 29733411 DOI: doi:10.1093/nar/gky346 ]

Sample:

Potassium ion (39 Da, Ligand)
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli (strain K12))
Mrna (3 kDa, RNA from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli (strain K12))
Guanosine-5'-triphosphate (523 Da, Ligand)
50s ribosomal protein l10 (14 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli (strain K12))
5s rrna (38 kDa, RNA from Escherichia coli)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli (strain K12))
N-formylmethionine (177 Da, Ligand)
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli (strain K12))
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l13 (15 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l4 (21 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s21 (7 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli (strain K12))
16s rrna (499 kDa, RNA from Escherichia coli)
Phe-trna-phe (24 kDa, RNA from Escherichia coli)
30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli (strain K12))
Elongation factor tu 2 (43 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli (strain K12))
Phenylalanine (165 Da, Ligand)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli (strain K12))
70s ribosome-ef-tu h84a complex with gtp and near-cognate trna (complex ii) (Complex from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli (strain K12))
23s rrna (941 kDa, RNA from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli (strain K12))
Trna-fmet (24 kDa, RNA from Escherichia coli)
Water (18 Da, Ligand)
50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli (strain K12))

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Showing 1 - 6 of 6. Page 1 of 1

Display: Statistics

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Select database:

EMDB [6]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

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