EMDB < Search results

EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

Edit your search query here and hit Return to execute it:

sample_name:"50S ribosomal protein L33 3"

Sort by: Download

Showing 1 - 3 of 3. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [3]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

EMD-13242

Download Map 3D View

PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state I

Release date: March 23, 2022
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7p7r
Q-score: -0.017

Crowe-McAuliffe C, Murina V, Turnbull KJ, Huch S, Kasari M, Takada H, Nersisyan L, Sundsfjord A, Hegstad K, Atkinson GC, Pelechano V, Wilson DN, Hauryliuk V

Nat Commun (2022) 13 pp. 1860-1860 [ DOI: doi:10.1038/s41467-022-29274-9 Pubmed: 35387982 ]

Sample:

50s ribosomal protein l5 (20 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
50s ribosomal protein l28 (7 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
Potassium ion (39 Da, Ligand)
30s ribosomal protein s4 (23 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
Spectinomycin (332 Da, Ligand)
30s ribosomal protein s5 (17 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
1,4-diaminobutane (88 Da, Ligand)
30s ribosomal protein s2 (29 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
30s ribosomal protein s19 (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
50s ribosomal protein l15 (15 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
50s ribosomal protein l20 (13 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
50s ribosomal protein l13 (16 kDa, Protein from Enterococcus faecalis V583)
5s rrna (37 kDa, RNA from Enterococcus faecalis V583)
50s ribosomal protein l31 type b (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
30s ribosomal protein s18 (9 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
Adenosine-5'-triphosphate (507 Da, Ligand)
30s ribosomal protein s17 (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
Complex of poxta-eq2 bound to the 70s ribosome from e. faecalis (initiation complex), state i. (2 MDa, Complex)
Magnesium ion (24 Da, Ligand)
30s ribosomal protein s7 (17 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
50s ribosomal protein l29 (7 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
50s ribosomal protein l19 (13 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
50s ribosomal protein l33 3 (5 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
50s ribosomal protein l4 (22 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
30s ribosomal protein s10 (11 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
23s rrna (944 kDa, RNA from Enterococcus faecalis V583)
Trna-fmet (24 kDa, RNA from Enterococcus faecalis V583)
Mrna (6 kDa, RNA from Enterococcus faecalis V583)
Are-abc-f family resistance factor poxta (70 kDa, Complex from Enterococcus faecalis)
50s ribosomal protein l6 (19 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
50s ribosomal protein l18 (12 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
30s ribosomal protein s16 (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
50s ribosomal protein l34 (5 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
30s ribosomal protein s6 (11 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
30s ribosomal protein s9 (14 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
30s ribosomal protein s20 (8 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
16s rrna (504 kDa, RNA from Enterococcus faecalis V583)
50s ribosomal protein l30 (6 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
50s ribosomal protein l35 (7 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
30s ribosomal protein s13 (13 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
50s ribosomal protein l24 (11 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
70s ribosome (2 MDa, Complex from Enterococcus faecalis)
50s ribosomal protein l17 (14 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
50s ribosomal protein l2 (30 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
50s ribosomal protein l27 (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
50s ribosomal protein l22 (12 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
Zinc ion (65 Da, Ligand)
30s ribosomal protein s11 (13 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
30s ribosomal protein s14 type z (7 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
50s ribosomal protein l1 (24 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
50s ribosomal protein l32-3 (6 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
Are-abc-f family resistance factor poxta (67 kDa, Protein from Enterococcus faecalis V583)
50s ribosomal protein l21 (11 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
30s ribosomal protein s12 (15 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
30s ribosomal protein s3 (24 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
30s ribosomal protein s8 (14 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
30s ribosomal protein s15 (10 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
50s ribosomal protein l36 (4 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
50s ribosomal protein l14 (13 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
50s ribosomal protein l23 (11 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
50s ribosomal protein l3 (22 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))
50s ribosomal protein l16 (16 kDa, Protein from Enterococcus faecalis (strain ATCC 700802 / V583))

[Show more]

EMD-13241

Download Map 3D View Raw data

E. faecalis 70S ribosome bound by PoxtA-EQ2, high-resolution combined volume

Release date: Feb. 23, 2022
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 7p7q
Q-score: 0.572

Crowe-McAuliffe C, Murina V, Turnbull KJ, Huch S, Kasari M, Takada H, Nersisyan L, Sundsfjord A, Hegstad K, Atkinson GC, Pelechano V, Wilson DN, Hauryliuk V

Nat Commun (2022) 13 pp. 1860-1860 [ DOI: doi:10.1038/s41467-022-29274-9 Pubmed: 35387982 ]

Sample:

30s ribosomal protein s19 (10 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s5 (17 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l33 3 (6 kDa, Protein from Enterococcus faecalis)
Fmet-trna (24 kDa, RNA from Enterococcus faecalis)
Are-abc-f family resistance factor poxta (67 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s16 (10 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l22 (12 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l34 (5 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l13 (16 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s7 (17 kDa, Protein from Enterococcus faecalis)
Complex of poxta-eq2 bound to the 70s ribosome from e. faecalis (initiation complex), state i. (Complex)
30s ribosomal protein s17 (10 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l29 (7 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l14 (13 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l24 (11 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s2 (29 kDa, Protein from Enterococcus faecalis)
70s ribosome (Complex from Enterococcus faecalis)
30s ribosomal protein s8 (14 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s11 (13 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s15 (10 kDa, Protein from Enterococcus faecalis)
Potassium ion (39 Da, Ligand)
50s ribosomal protein l31 type b (10 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l15 (15 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l30 (6 kDa, Protein from Enterococcus faecalis)
Zinc ion (65 Da, Ligand)
Mrna (6 kDa, RNA from Enterococcus faecalis)
30s ribosomal protein s13 (13 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l6 (19 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l21 (11 kDa, Protein from Enterococcus faecalis)
1,4-diaminobutane (88 Da, Ligand)
50s ribosomal protein l16 (16 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l28 (7 kDa, Protein from Enterococcus faecalis)
Adenosine-5'-triphosphate (507 Da, Ligand)
50s ribosomal protein l23 (11 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l19 (13 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l35 (7 kDa, Protein from Enterococcus faecalis)
5s rrna (37 kDa, RNA from Enterococcus faecalis)
30s ribosomal protein s18 (9 kDa, Protein from Enterococcus faecalis)
Water (18 Da, Ligand)
50s ribosomal protein l2 (30 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l18 (12 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l3 (22 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s3 (24 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s12 (15 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l5 (20 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l32-3 (6 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s10 (11 kDa, Protein from Enterococcus faecalis)
Magnesium ion (24 Da, Ligand)
Spectinomycin (332 Da, Ligand)
50s ribosomal protein l1 (24 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s4 (23 kDa, Protein from Enterococcus faecalis)
16s rrna (504 kDa, RNA from Enterococcus faecalis)
50s ribosomal protein l36 (4 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s6 (11 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s14 type z (7 kDa, Protein from Enterococcus faecalis)
23s rrna (943 kDa, RNA from Enterococcus faecalis)
30s ribosomal protein s9 (14 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l4 (22 kDa, Protein from Enterococcus faecalis)
Poxa (Complex from Enterococcus faecalis)
50s ribosomal protein l27 (10 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l20 (13 kDa, Protein from Enterococcus faecalis)
30s ribosomal protein s20 (8 kDa, Protein from Enterococcus faecalis)
50s ribosomal protein l17 (14 kDa, Protein from Enterococcus faecalis)

[Show more]

EMD-3581

Download Map 3D View

Structure of 70S ribosome from Lactococcus lactis

Release date: Oct. 11, 2017
Resolution: 5.6 Å
EM Method: Single-particle
Fitted PDBs: 5myj

Franken LE, Oostergetel GT, Pijning T, Puri P, Arkhipova V, Boekema EJ, Poolman B, Guskov A

Nat Commun (2017) 8 pp. 722-722 [ DOI: doi:10.1038/s41467-017-00718-x Pubmed: 28959045 ]

Sample:

30s ribosomal protein s3 (24 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l27 (10 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l30 (6 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
Ribosome hibernation promotion factor (21 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
16s ribosomal rna (497 kDa, RNA from Lactococcus lactis subsp. cremoris MG1363)
30s ribosomal protein s5 (17 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
30s ribosomal protein s12 (15 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l22 (12 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
30s ribosomal protein s17 (10 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l24 (10 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l14 (12 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
30s ribosomal protein s13 (13 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
30s ribosomal protein s9 (14 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l29 (7 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
30s ribosomal protein s8 (14 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
30s ribosomal protein s21 (7 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l31 type b (9 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l21 (11 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
30s ribosomal protein s14 type z (7 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
30s ribosomal protein s19 (10 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
30s ribosomal protein s7 (17 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
30s ribosomal protein s4 (23 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l5 (20 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
30s ribosomal protein s18 (9 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
30s ribosomal protein s6 (11 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l35 (7 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
30s ribosomal protein s10 (11 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
30s ribosomal protein s20 (8 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
30s ribosomal protein s16 (10 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l18 (12 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
30s ribosomal protein s15 (10 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l2 (29 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
30s ribosomal protein s2 (28 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l15 (15 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l32 (6 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l36 (4 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l3 (21 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l20 (13 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l34 (5 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l6 (19 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l16 (15 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l19 (13 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l28 (7 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
23s ribosomal rna (938 kDa, RNA from Lactococcus lactis subsp. cremoris MG1363)
50s ribosomal protein l33 3 (5 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l4 (22 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l17 (14 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
50s ribosomal protein l23 (10 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
70s ribosome (Complex from Lactococcus lactis)
50s ribosomal protein l13 (16 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))
5s ribosomal rna (37 kDa, RNA from Lactococcus lactis subsp. cremoris MG1363)
30s ribosomal protein s11 (13 kDa, Protein from Lactococcus lactis subsp. cremoris (strain MG1363))

[Show more]

Sort by: Download

Showing 1 - 3 of 3. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [3]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: