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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"60S ribosomal protein L14-like protein" AND author_name:"Hurt E" AND author_name:"Huang Z" AND author_orcid:"0000-0001-6483-6606" AND resolution:[2 TO 3} AND author_name:"Berninghausen O"

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EMD-35287

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Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1

Release date: May 17, 2023
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8i9x
Q-score: 0.51

Lau B, Huang Z, Kellner N, Niu S, Berninghausen O, Beckmann R, Hurt E, Cheng J

EMBO Rep (2023) 24 pp. e56910-e56910 [ DOI: doi:10.15252/embr.202356910 Pubmed: 37129998 ]

Sample:

60s ribosomal protein l38-like protein (9 kDa, Protein from Chaetomium thermophilum)
Atp-dependent rna helicase dbp10 (102 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l3-like protein (44 kDa, Protein from Chaetomium thermophilum)
Ribosomal protein l37 (10 kDa, Protein from Chaetomium thermophilum)
Rna helicase (66 kDa, Protein from Chaetomium thermophilum)
Adomet-dependent rrna methyltransferase spb1 (95 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l21-like protein (18 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l9-like protein (21 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l4-like protein (39 kDa, Protein from Chaetomium thermophilum)
Rna (319-mer) (102 kDa, RNA from Chaetomium thermophilum)
Ribosomal protein l18-like protein (24 kDa, Protein from Chaetomium thermophilum)
Ribosome biogenesis protein ytm1 (52 kDa, Protein from Chaetomium thermophilum)
Guanosine-5'-triphosphate (523 Da, Ligand)
Pre-60s ribosome (Complex from Chaetomium thermophilum)
60s ribosomal protein l33-like protein (12 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l27 (15 kDa, Protein from Chaetomium thermophilum)
Brix domain-containing protein (36 kDa, Protein from Chaetomium thermophilum)
Eukaryotic translation initiation factor 6 (26 kDa, Protein from Chaetomium thermophilum)
Ribosomal protein l34-like protein (13 kDa, Protein from Chaetomium thermophilum)
Nucleolar gtp-binding protein 1 (75 kDa, Protein from Chaetomium thermophilum)
Dolichyl-diphosphooligosaccharide--protein glycotransferase (105 kDa, Protein from Chaetomium thermophilum)
Ribosomal protein (24 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l16-like protein (22 kDa, Protein from Chaetomium thermophilum)
Ribosome (Complex from Chaetomium thermophilum)
60s ribosomal protein l22-like protein (14 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l26-like protein (15 kDa, Protein from Chaetomium thermophilum)
Ribosome biogenesis protein c8f11.04 (43 kDa, Protein from Chaetomium thermophilum)
Putative gtp binding protein (61 kDa, Protein from Chaetomium thermophilum)
Zinc ion (65 Da, Ligand)
60s ribosomal protein l36 (12 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l8 (29 kDa, Protein from Chaetomium thermophilum)
Rna methyltransferase nop2-like protein (83 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l7-like protein (28 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l13 (24 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l30-like protein (11 kDa, Protein from Chaetomium thermophilum)
Rrna-processing protein (14 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l20 (20 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l12-like protein (17 kDa, Protein from Chaetomium thermophilum)
Nucleolar complex-associated protein 3 (77 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l39 (6 kDa, Protein from Chaetomium thermophilum)
Rrna-processing protein ebp2 (50 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l23-like protein (14 kDa, Protein from Chaetomium thermophilum)
Ribosome biogenesis protein erb1 (90 kDa, Protein from Chaetomium thermophilum)
Rna (3341-mer) (1 MDa, RNA from Chaetomium thermophilum)
60s ribosomal protein l32-like protein (15 kDa, Protein from Chaetomium thermophilum)
Ribosome assembly factor mrt4 (30 kDa, Protein from Chaetomium thermophilum)
Ribosome biogenesis protein rlp24 (26 kDa, Protein from Chaetomium thermophilum)
Ribosomal protein l19 (317 kDa, Protein from Chaetomium thermophilum)
Putative noc2 family protein (89 kDa, Protein from Chaetomium thermophilum)
Nucleolar protein 16 (26 kDa, Protein from Chaetomium thermophilum)
Putative 60s ribosomal protein (13 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l17-like protein (21 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l25-like protein (17 kDa, Protein from Chaetomium thermophilum)
Ribosome biogenesis protein nsa2 homolog (29 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l6 (22 kDa, Protein from Chaetomium thermophilum)
Duf2423 domain-containing protein (13 kDa, Protein from Chaetomium thermophilum)
Putative rna-binding protein (45 kDa, Protein from Chaetomium thermophilum)
60s ribosomal subunit-like protein (22 kDa, Protein from Chaetomium thermophilum)
Pescadillo homolog (77 kDa, Protein from Chaetomium thermophilum)
Ribosomal protein l15 (24 kDa, Protein from Chaetomium thermophilum)
Putative 60s ribosomal protein (15 kDa, Protein from Chaetomium thermophilum)
60s ribosome subunit biogenesis protein nip7 (20 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l14-like protein (16 kDa, Protein from Chaetomium thermophilum)

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EMD-35289

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Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4

Release date: May 17, 2023
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8i9z
Q-score: 0.524

Lau B, Huang Z, Kellner N, Niu S, Berninghausen O, Beckmann R, Hurt E, Cheng J

EMBO Rep (2023) 24 pp. e56910-e56910 [ DOI: doi:10.15252/embr.202356910 Pubmed: 37129998 ]

Sample:

Adomet-dependent rrna methyltransferase spb1 (95 kDa, Protein from Chaetomium thermophilum)
Ribosomal protein (24 kDa, Protein from Chaetomium thermophilum)
Ribosomal protein l18-like protein (24 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l6 (22 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l9-like protein (21 kDa, Protein from Chaetomium thermophilum)
Ribosomal protein l34-like protein (13 kDa, Protein from Chaetomium thermophilum)
Adenosine-5'-diphosphate (427 Da, Ligand)
Ribosomal protein l15 (24 kDa, Protein from Chaetomium thermophilum)
Brix domain-containing protein (36 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l4-like protein (39 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l13 (24 kDa, Protein from Chaetomium thermophilum)
Dolichyl-diphosphooligosaccharide--protein glycotransferase (105 kDa, Protein from Chaetomium thermophilum)
Rna (319-mer) (102 kDa, RNA from Chaetomium thermophilum)
60s ribosomal subunit-like protein (22 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l20 (20 kDa, Protein from Chaetomium thermophilum)
Nucleolar complex-associated protein 3 (77 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l27 (15 kDa, Protein from Chaetomium thermophilum)
Magnesium ion (24 Da, Ligand)
Guanosine-5'-triphosphate (523 Da, Ligand)
Eukaryotic translation initiation factor 6 (26 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l3-like protein (44 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l32-like protein (15 kDa, Protein from Chaetomium thermophilum)
Ribosome assembly factor mrt4 (30 kDa, Protein from Chaetomium thermophilum)
Ribosomal protein l19 (317 kDa, Protein from Chaetomium thermophilum)
Ribosome (Complex from Chaetomium thermophilum)
Rna methyltransferase nop2-like protein (83 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l12-like protein (17 kDa, Protein from Chaetomium thermophilum)
Rna (3341-mer) (1 MDa, RNA from Chaetomium thermophilum)
60s ribosomal protein l8 (29 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l22-like protein (14 kDa, Protein from Chaetomium thermophilum)
Duf2423 domain-containing protein (13 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l38-like protein (9 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l21-like protein (18 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l39 (6 kDa, Protein from Chaetomium thermophilum)
Ribosome biogenesis protein erb1 (90 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l7-like protein (28 kDa, Protein from Chaetomium thermophilum)
Ribosome biogenesis protein ytm1 (52 kDa, Protein from Chaetomium thermophilum)
Nucleolar protein 16 (26 kDa, Protein from Chaetomium thermophilum)
Ribosome biogenesis protein rlp24 (26 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l30-like protein (11 kDa, Protein from Chaetomium thermophilum)
Putative 60s ribosomal protein (15 kDa, Protein from Chaetomium thermophilum)
Nucleolar gtp-binding protein 1 (75 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l26-like protein (15 kDa, Protein from Chaetomium thermophilum)
Putative gtp binding protein (61 kDa, Protein from Chaetomium thermophilum)
Rrna-processing protein (14 kDa, Protein from Chaetomium thermophilum)
Pre-60s ribosome (Complex from Chaetomium thermophilum)
60s ribosomal protein l23-like protein (14 kDa, Protein from Chaetomium thermophilum)
Zinc ion (65 Da, Ligand)
60s ribosomal protein l25-like protein (17 kDa, Protein from Chaetomium thermophilum)
Putative noc2 family protein (89 kDa, Protein from Chaetomium thermophilum)
Putative 60s ribosomal protein (13 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l33-like protein (12 kDa, Protein from Chaetomium thermophilum)
Rna helicase (66 kDa, Protein from Chaetomium thermophilum)
Ribosome biogenesis protein nsa2 homolog (29 kDa, Protein from Chaetomium thermophilum)
Pescadillo homolog (77 kDa, Protein from Chaetomium thermophilum)
Ribosome biogenesis protein c8f11.04 (43 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l17-like protein (21 kDa, Protein from Chaetomium thermophilum)
Ribosomal protein l37 (10 kDa, Protein from Chaetomium thermophilum)
Atp-dependent rna helicase (75 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l16-like protein (22 kDa, Protein from Chaetomium thermophilum)
Putative rna-binding protein (45 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l14-like protein (16 kDa, Protein from Chaetomium thermophilum)
Rrna-processing protein ebp2 (50 kDa, Protein from Chaetomium thermophilum)
60s ribosome subunit biogenesis protein nip7 (20 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l36 (12 kDa, Protein from Chaetomium thermophilum)

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EMD-35290

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Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6

Release date: May 17, 2023
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8ia0
Q-score: 0.531

Lau B, Huang Z, Kellner N, Niu S, Berninghausen O, Beckmann R, Hurt E, Cheng J

EMBO Rep (2023) 24 pp. e56910-e56910 [ DOI: doi:10.15252/embr.202356910 Pubmed: 37129998 ]

Sample:

60s ribosomal protein l38-like protein (9 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l3-like protein (44 kDa, Protein from Chaetomium thermophilum)
Nucleolar protein 12 (26 kDa, Protein from Chaetomium thermophilum)
Ribosomal protein l37 (10 kDa, Protein from Chaetomium thermophilum)
Rna helicase (66 kDa, Protein from Chaetomium thermophilum)
Adomet-dependent rrna methyltransferase spb1 (95 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l21-like protein (18 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l9-like protein (21 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l4-like protein (39 kDa, Protein from Chaetomium thermophilum)
Rna (319-mer) (102 kDa, RNA from Chaetomium thermophilum)
Ribosomal protein l18-like protein (24 kDa, Protein from Chaetomium thermophilum)
Ribosome biogenesis protein ytm1 (52 kDa, Protein from Chaetomium thermophilum)
Guanosine-5'-triphosphate (523 Da, Ligand)
Atp-dependent rna helicase (75 kDa, Protein from Chaetomium thermophilum)
Adenosine-5'-diphosphate (427 Da, Ligand)
Pre-60s ribosome (Complex from Chaetomium thermophilum)
60s ribosomal protein l33-like protein (12 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l27 (15 kDa, Protein from Chaetomium thermophilum)
Brix domain-containing protein (36 kDa, Protein from Chaetomium thermophilum)
Eukaryotic translation initiation factor 6 (26 kDa, Protein from Chaetomium thermophilum)
Ribosomal protein l34-like protein (13 kDa, Protein from Chaetomium thermophilum)
Nucleolar gtp-binding protein 1 (75 kDa, Protein from Chaetomium thermophilum)
Dolichyl-diphosphooligosaccharide--protein glycotransferase (105 kDa, Protein from Chaetomium thermophilum)
Ribosomal protein (24 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l16-like protein (22 kDa, Protein from Chaetomium thermophilum)
Ribosome (Complex from Chaetomium thermophilum)
60s ribosomal protein l22-like protein (14 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l26-like protein (15 kDa, Protein from Chaetomium thermophilum)
Ribosome biogenesis protein c8f11.04 (43 kDa, Protein from Chaetomium thermophilum)
Putative gtp binding protein (61 kDa, Protein from Chaetomium thermophilum)
Zinc ion (65 Da, Ligand)
60s ribosomal protein l36 (12 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l8 (29 kDa, Protein from Chaetomium thermophilum)
Rna methyltransferase nop2-like protein (83 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l7-like protein (28 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l13 (24 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l30-like protein (11 kDa, Protein from Chaetomium thermophilum)
Rrna-processing protein (14 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l20 (20 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l43-like protein (10 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l12-like protein (17 kDa, Protein from Chaetomium thermophilum)
Nucleolar complex-associated protein 3 (77 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l39 (6 kDa, Protein from Chaetomium thermophilum)
Rrna-processing protein ebp2 (50 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l23-like protein (14 kDa, Protein from Chaetomium thermophilum)
Ribosome biogenesis protein erb1 (90 kDa, Protein from Chaetomium thermophilum)
Rna (3341-mer) (1 MDa, RNA from Chaetomium thermophilum)
60s ribosomal protein l32-like protein (15 kDa, Protein from Chaetomium thermophilum)
Magnesium ion (24 Da, Ligand)
Ribosome assembly factor mrt4 (30 kDa, Protein from Chaetomium thermophilum)
Ribosome biogenesis protein rlp24 (26 kDa, Protein from Chaetomium thermophilum)
Ribosomal protein l19 (317 kDa, Protein from Chaetomium thermophilum)
Pum-hd domain-containing protein (77 kDa, Protein from Chaetomium thermophilum)
Putative noc2 family protein (89 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l2-like protein (27 kDa, Protein from Chaetomium thermophilum)
Nucleolar protein 16 (26 kDa, Protein from Chaetomium thermophilum)
Putative 60s ribosomal protein (13 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l17-like protein (21 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l25-like protein (17 kDa, Protein from Chaetomium thermophilum)
Ribosome biogenesis protein nsa2 homolog (29 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l6 (22 kDa, Protein from Chaetomium thermophilum)
Duf2423 domain-containing protein (13 kDa, Protein from Chaetomium thermophilum)
Putative rna-binding protein (45 kDa, Protein from Chaetomium thermophilum)
60s ribosomal subunit-like protein (22 kDa, Protein from Chaetomium thermophilum)
Pescadillo homolog (77 kDa, Protein from Chaetomium thermophilum)
Ribosomal protein l15 (24 kDa, Protein from Chaetomium thermophilum)
Putative 60s ribosomal protein (15 kDa, Protein from Chaetomium thermophilum)
60s ribosome subunit biogenesis protein nip7 (20 kDa, Protein from Chaetomium thermophilum)
60s ribosomal protein l14-like protein (16 kDa, Protein from Chaetomium thermophilum)

[Show more]

Sort by: Download

Showing 1 - 3 of 3. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [3]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: