Copper-transporting ATPase HMA4 in E1 state apo
Resolution: 3.58 Å
EM Method: Single-particle
Fitted PDBs: 8q73
Q-score: 0.259
Guo Z, Oradd F, Bagenholm V, Gronberg C, Ma JF, Ott P, Wang Y, Andersson M, Pedersen PA, Wang K, Gourdon P
Nat Commun (2024) 15 pp. 2690-2690 [ Pubmed: 38538615 DOI: doi:10.1038/s41467-024-47001-4 ]
Copper-transporting ATPase HMA4 in E1 state with Cu
Resolution: 3.68 Å
EM Method: Single-particle
Fitted PDBs: 8q74
Q-score: 0.282
Guo Z, Oradd F, Bagenholm V, Gronberg C, Ma JF, Ott P, Wang Y, Andersson M, Pedersen PA, Wang K, Gourdon P
Nat Commun (2024) 15 pp. 2690-2690 [ Pubmed: 38538615 DOI: doi:10.1038/s41467-024-47001-4 ]
Copper-transporting ATPase HMA4 in E2P state with AlF
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8q75
Q-score: 0.368
Guo Z, Oradd F, Bagenholm V, Gronberg C, Ma JF, Ott P, Wang Y, Andersson M, Pedersen PA, Wang K, Gourdon P
Nat Commun (2024) 15 pp. 2690-2690 [ Pubmed: 38538615 DOI: doi:10.1038/s41467-024-47001-4 ]
- Copper-transporting atpase hma4 (94 kDa, Protein from Oryza sativa Japonica Group)
- Copper-transporting atpase hma4 from oryza sativa subsp. japonica (Complex from Oryza sativa Japonica Group)
- Magnesium ion (24 Da, Ligand)
- Tetrafluoroaluminate ion (102 Da, Ligand)
Copper-transporting ATPase HMA4 in E2P state with BeF
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 8q76
Q-score: 0.33
Guo Z, Oradd F, Bagenholm V, Gronberg C, Ma JF, Ott P, Wang Y, Andersson M, Pedersen PA, Wang K, Gourdon P
Nat Commun (2024) 15 pp. 2690-2690 [ Pubmed: 38538615 DOI: doi:10.1038/s41467-024-47001-4 ]
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3, Vo
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9b8o
Q-score: 0.513
Coupland CE, Karimi R, Bueler SA, Liang Y, Courbon GM, Di Trani JM, Wong CJ, Saghian R, Youn JY, Wang LY, Rubinstein JL
Science (2024) [ DOI: doi:10.1126/science.adp5577 ]
- Methyl (3r,6z,10e,14e)-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraen-1-yl dihydrogen diphosphate (534 Da, Ligand)
- V-type proton atpase subunit s1 (51 kDa, Protein from Rattus norvegicus)
- V-type proton atpase 116 kda subunit a 1 (94 kDa, Protein from Rattus norvegicus)
- Synaptic vesicle v-atpase with synaptophysin and sidk, state 3, vo (Complex from Rattus norvegicus)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- (7r)-4,7-dihydroxy-n,n,n-trimethyl-10-oxo-3,5,9-trioxa-4-phosphaheptacosan-1-aminium 4-oxide (524 Da, Ligand)
- Synaptophysin (33 kDa, Protein from Rattus norvegicus)
- Atpase, h+ transporting, v0 subunit b (predicted), isoform cra_a (21 kDa, Protein from Rattus norvegicus)
- Phosphatidylethanolamine (734 Da, Ligand)
- Rnasek protein (9 kDa, Protein from Rattus norvegicus)
- V-type proton atpase subunit (40 kDa, Protein from Rattus norvegicus)
- V-type proton atpase subunit f (13 kDa, Protein from Rattus norvegicus)
- Cholesterol (386 Da, Ligand)
- V-type proton atpase subunit e 2 (9 kDa, Protein from Rattus norvegicus)
- V-type proton atpase 16 kda proteolipid subunit c (15 kDa, Protein from Rattus norvegicus)
- Renin receptor (39 kDa, Protein from Rattus norvegicus)
- Atpase h+-transporting v1 subunit d (28 kDa, Protein from Rattus norvegicus)
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3, peripheral stalks
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9b8q
Q-score: 0.363
Coupland CE, Karimi R, Bueler SA, Liang Y, Courbon GM, Di Trani JM, Wong CJ, Saghian R, Youn JY, Wang LY, Rubinstein JL
Science (2024) [ DOI: doi:10.1126/science.adp5577 ]
- V-type proton atpase subunit c 1 (43 kDa, Protein from Rattus norvegicus)
- V-type proton atpase subunit h (55 kDa, Protein from Rattus norvegicus)
- V-type proton atpase subunit g (13 kDa, Protein from Rattus norvegicus)
- V-type proton atpase 116 kda subunit a isoform 1 (96 kDa, Protein from Rattus norvegicus)
- V-type proton atpase subunit e 1 (26 kDa, Protein from Rattus norvegicus)
- Synaptic vesicle v-atpase with synaptophysin and sidk, state 3, peripheral stalks (Complex from Rattus norvegicus)
Structure of VCP in complex with an ATPase activator (D2 domains only, hexameric form)
Jones NH, Liu Q, Urnavicius L, Dahan NE, Vostal LE, Kapoor TM
PNAS (2024) 121 pp. e2316892121-e2316892121 [ DOI: doi:10.1073/pnas.2316892121 Pubmed: 38833472 ]