Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 8k9e
Q-score: 0.548
Xin J, Min Z, Yu L, Yuan X, Liu A, Wu W, Zhang X, He H, Wu J, Xin Y, Blankenship RE, Tian C, Xu X
Plant Cell (2024) [ Pubmed: 38299372 DOI: doi:10.1093/plcell/koae029 ]
- Iron/sulfur cluster (351 Da, Ligand)
- Unknown (4 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- Fe3-s4 cluster (295 Da, Ligand)
- Alternative complex iii (Complex from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- [(2s)-2-octadecanoyloxypropyl] octadecanoate (609 Da, Ligand)
- [(2~{r})-3-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-2-pentadecanoyloxy-propyl] pentadecanoate (663 Da, Ligand)
- Polysulphide reductase nrfd (55 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- Cytochrome c domain-containing protein (23 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- [(2~{r})-3-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-2-tetradecanoyloxy-propyl] hexadecanoate (663 Da, Ligand)
- Quinol:cytochrome c oxidoreductase quinone-binding subunit 2 (45 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- Cytochrome c7-like domain-containing protein (25 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- Heme c (618 Da, Ligand)
- Quinol:cytochrome c oxidoreductase membrane protein (19 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- Fe-s-cluster-containing hydrogenase components 1-like protein (113 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- Uncharacterized protein (12 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- 1,3-bis(13-methyltetradecanoyloxy)propan-2-yl pentadecanoate (765 Da, Ligand)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8k9f
Q-score: 0.527
Xin J, Min Z, Yu L, Yuan X, Liu A, Wu W, Zhang X, He H, Wu J, Xin Y, Blankenship RE, Tian C, Xu X
Plant Cell (2024) [ Pubmed: 38299372 DOI: doi:10.1093/plcell/koae029 ]
- Hypothetical protein (12 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- Iron/sulfur cluster (351 Da, Ligand)
- Unknown (4 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- Fe3-s4 cluster (295 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Alternative complex iii (Complex from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- [(2~{r})-3-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-2-pentadecanoyloxy-propyl] pentadecanoate (663 Da, Ligand)
- Polysulphide reductase nrfd (55 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- Cytochrome c domain-containing protein (23 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- [(2~{r})-3-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-2-tetradecanoyloxy-propyl] hexadecanoate (663 Da, Ligand)
- Quinol:cytochrome c oxidoreductase quinone-binding subunit 2 (45 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- Cytochrome c7-like domain-containing protein (25 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- Heme c (618 Da, Ligand)
- Quinol:cytochrome c oxidoreductase membrane protein (19 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- Fe-s-cluster-containing hydrogenase components 1-like protein (113 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- 1,3-bis(13-methyltetradecanoyloxy)propan-2-yl pentadecanoate (765 Da, Ligand)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8x2j
Q-score: 0.561
Xin J, Min Z, Yu L, Yuan X, Liu A, Wu W, Zhang X, He H, Wu J, Xin Y, Blankenship RE, Tian C, Xu X
Plant Cell (2024) [ Pubmed: 38299372 DOI: doi:10.1093/plcell/koae029 ]
- Iron/sulfur cluster (351 Da, Ligand)
- Unknown (4 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- Fe3-s4 cluster (295 Da, Ligand)
- 2-heptyl-4-hydroxy quinoline n-oxide (259 Da, Ligand)
- Alternative complex iii (Complex from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- [(2~{r})-3-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-2-pentadecanoyloxy-propyl] pentadecanoate (663 Da, Ligand)
- Polysulphide reductase nrfd (55 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- Cytochrome c domain-containing protein (23 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- [(2~{r})-3-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-2-tetradecanoyloxy-propyl] hexadecanoate (663 Da, Ligand)
- Quinol:cytochrome c oxidoreductase quinone-binding subunit 2 (45 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- Cytochrome c7-like domain-containing protein (25 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- Heme c (618 Da, Ligand)
- Quinol:cytochrome c oxidoreductase membrane protein (19 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- Fe-s-cluster-containing hydrogenase components 1-like protein (113 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- Uncharacterized protein (12 kDa, Protein from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl))
- 1,3-bis(13-methyltetradecanoyloxy)propan-2-yl pentadecanoate (765 Da, Ligand)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6lod
Q-score: 0.537
Shi Y, Xin Y, Wang C, Blankenship RE, Sun F, Xu X
Sci Adv (2020) 6 pp. eaba2739-eaba2739 [ DOI: doi:10.1126/sciadv.aba2739 Pubmed: 32832681 ]
- Uncharacterized protein actf (46 kDa, Protein from Roseiflexus castenholzii (strain DSM 13941 / HLO8))
- Fe3-s4 cluster (295 Da, Ligand)
- Multiheme_cytc domain-containing protein (26 kDa, Protein from Roseiflexus castenholzii (strain DSM 13941 / HLO8))
- [(2s)-2-octadecanoyloxypropyl] octadecanoate (609 Da, Ligand)
- Air-oxidized alternative complex iii (Complex from Roseiflexus castenholzii (strain DSM 13941 / HLO8))
- Polysulphide reductase nrfd (53 kDa, Protein from Roseiflexus castenholzii (strain DSM 13941 / HLO8))
- Cytochrome c domain-containing protein (18 kDa, Protein from Roseiflexus castenholzii (strain DSM 13941 / HLO8))
- Heme c (618 Da, Ligand)
- Uncharacterized protein actd (21 kDa, Protein from Roseiflexus castenholzii (strain DSM 13941 / HLO8))
- Fe-s-cluster-containing hydrogenase components 1-like protein (102 kDa, Protein from Roseiflexus castenholzii (strain DSM 13941 / HLO8))
- Iron/sulfur cluster (351 Da, Ligand)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6loe
Q-score: 0.535
Shi Y, Xin Y, Wang C, Blankenship RE, Sun F, Xu X
Sci Adv (2020) 6 pp. eaba2739-eaba2739 [ DOI: doi:10.1126/sciadv.aba2739 Pubmed: 32832681 ]
- Multiheme_cytc domain-containing protein (26 kDa, Protein from Roseiflexus castenholzii (strain DSM 13941 / HLO8))
- Uncharacterized protein actf (46 kDa, Protein from Roseiflexus castenholzii (strain DSM 13941 / HLO8))
- Fe3-s4 cluster (295 Da, Ligand)
- Uncharacterized protein actd (21 kDa, Protein from Roseiflexus castenholzii (strain DSM 13941 / HLO8))
- Cytochrome c domain-containing protein (18 kDa, Protein from Roseiflexus castenholzii (strain DSM 13941 / HLO8))
- [(2s)-2-octadecanoyloxypropyl] octadecanoate (609 Da, Ligand)
- Fe-s-cluster-containing hydrogenase components 1-like protein (102 kDa, Protein from Roseiflexus castenholzii (strain DSM 13941 / HLO8))
- Iron/sulfur cluster (351 Da, Ligand)
- Heme c (618 Da, Ligand)
- Dithionite-reduced photosynthetic alternative complex iii (Complex from Roseiflexus castenholzii (strain DSM 13941 / HLO8))
- Polysulphide reductase nrfd (53 kDa, Protein from Roseiflexus castenholzii (strain DSM 13941 / HLO8))
Resolution: 3.87 Å
EM Method: Single-particle
Fitted PDBs: 6f0k
Q-score: 0.38
Sousa JS, Calisto F, Langer JD, Mills DJ, Refojo PN, Teixeira M, Kuhlbrandt W, Vonck J, Pereira MM
Nat Commun (2018) 9 pp. 1728-1728 [ Pubmed: 29712914 DOI: doi:10.1038/s41467-018-04141-8 ]
- Fe-s-cluster-containing hydrogenase (115 kDa, Protein from Rhodothermus obamensis)
- Fe3-s4 cluster (295 Da, Ligand)
- Alternative complex iii (300 MDa, Complex from Rhodothermus marinus)
- Actd (23 kDa, Protein from Rhodothermus obamensis)
- Cytochrome c family protein (24 kDa, Protein from Rhodothermus obamensis)
- Polysulphide reductase nrfd (55 kDa, Protein from Rhodothermus obamensis)
- Heme c (618 Da, Ligand)
- Acth (20 kDa, Protein from Rhodothermus obamensis)
- Actf (48 kDa, Protein from Rhodothermus obamensis)
- Iron/sulfur cluster (351 Da, Ligand)
- Quinol:cytochrome c oxidoreductase monoheme cytochrome subunit (23 kDa, Protein from Rhodothermus obamensis)
Cryo-EM density map of Alternative Complex III from Flavobacterium johnsoniae (Wild Type)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6btm
Q-score: 0.482
Sun C, Benlekbir S, Venkatakrishnan P, Wang Y, Hong S, Hosler J, Tajkhorshid E, Rubinstein JL, Gennis RB
Nature (2018) 557 pp. 123-126 [ Pubmed: 29695868 DOI: doi:10.1038/s41586-018-0061-y ]
- Alternative complex iii subunit c (53 kDa, Protein from Flavobacterium johnsoniae UW101)
- Fe3-s4 cluster (295 Da, Ligand)
- Alternative complex iii subunit a (48 kDa, Protein from Flavobacterium johnsoniae UW101)
- Iron/sulfur cluster (351 Da, Ligand)
- Alternative complex iii subunit b (102 kDa, Protein from Flavobacterium johnsoniae UW101)
- (2s)-3-hydroxypropane-1,2-diyl ditetradecanoate (512 Da, Ligand)
- Decanoic acid (172 Da, Ligand)
- Heme c (618 Da, Ligand)
- Aciii-cyt aa3 supercomplex (Complex from Flavobacterium johnsoniae UW101)
- Alternative complex iii subunit e (18 kDa, Protein from Flavobacterium johnsoniae UW101)
- Alternative complex iii subunit f (52 kDa, Protein from Flavobacterium johnsoniae UW101)
- Alternative complex iii subunit d (19 kDa, Protein from Flavobacterium johnsoniae UW101)