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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

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offer vital services to scientists in the member states

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scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"Dimethyladenosine transferase 1, mitochondrial"

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EMD-26966

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Human mitochondrial small subunit assembly intermediate (State A)

Release date: Dec. 14, 2022
Resolution: 2.66 Å
EM Method: Single-particle
Fitted PDBs: 8csp
Q-score: 0.548

Harper NJ, Burnside C, Klinge S

Nature (2023) 614 pp. 175-181 [ DOI: doi:10.1038/s41586-022-05621-0 Pubmed: 36482135 ]

Sample:

28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Homo sapiens)
28s ribosomal protein s27, mitochondrial (47 kDa, Protein from Homo sapiens)
Nitric oxide-associated protein 1 (78 kDa, Protein from Homo sapiens)
12s mitochondrial rrna (306 kDa, RNA from Homo sapiens)
28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Homo sapiens)
28s ribosomal protein s31, mitochondrial (45 kDa, Protein from Homo sapiens)
Malonyl-coa-acyl carrier protein transacylase, mitochondrial (43 kDa, Protein from Homo sapiens)
Human mitochondrial small subunit assembly intermediate, state a (1 MDa, Complex from Homo sapiens)
Gtpase era, mitochondrial (48 kDa, Protein from Homo sapiens)
28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Homo sapiens)
28s ribosomal protein s26, mitochondrial (24 kDa, Protein from Homo sapiens)
Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Homo sapiens)
28s ribosomal protein s29, mitochondrial (45 kDa, Protein from Homo sapiens)
S-adenosylmethionine (398 Da, Ligand)
28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Homo sapiens)
Guanosine-5'-diphosphate (443 Da, Ligand)
Dimethyladenosine transferase 1, mitochondrial (39 kDa, Protein from Homo sapiens)
Potassium ion (39 Da, Ligand)
28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Homo sapiens)
28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Homo sapiens)
Zinc ion (65 Da, Ligand)
Methyltransferase-like protein 17, mitochondrial (50 kDa, Protein from Homo sapiens)
28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Homo sapiens)
28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Homo sapiens)
Adenosine-5'-triphosphate (507 Da, Ligand)
28s ribosomal protein s5, mitochondrial (48 kDa, Protein from Homo sapiens)
28s ribosomal protein s2, mitochondrial (33 kDa, Protein from Homo sapiens)
28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Homo sapiens)
28s ribosomal protein s35, mitochondrial (36 kDa, Protein from Homo sapiens)
Magnesium ion (24 Da, Ligand)
28s ribosomal protein s28, mitochondrial (20 kDa, Protein from Homo sapiens)
28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Homo sapiens)
28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Homo sapiens)
Iron/sulfur cluster (351 Da, Ligand)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Homo sapiens)
28s ribosomal protein s22, mitochondrial (41 kDa, Protein from Homo sapiens)
28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Homo sapiens)
28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Homo sapiens)

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EMD-26967

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Human mitochondrial small subunit assembly intermediate (State B)

Release date: Dec. 14, 2022
Resolution: 2.54 Å
EM Method: Single-particle
Fitted PDBs: 8csq
Q-score: 0.566

Harper NJ, Burnside C, Klinge S

Nature (2023) 614 pp. 175-181 [ DOI: doi:10.1038/s41586-022-05621-0 Pubmed: 36482135 ]

Sample:

28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Homo sapiens)
28s ribosomal protein s27, mitochondrial (47 kDa, Protein from Homo sapiens)
12s mitochondrial rrna (306 kDa, RNA from Homo sapiens)
28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Homo sapiens)
28s ribosomal protein s31, mitochondrial (45 kDa, Protein from Homo sapiens)
Malonyl-coa-acyl carrier protein transacylase, mitochondrial (43 kDa, Protein from Homo sapiens)
Gtpase era, mitochondrial (48 kDa, Protein from Homo sapiens)
28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Homo sapiens)
28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Homo sapiens)
28s ribosomal protein s26, mitochondrial (24 kDa, Protein from Homo sapiens)
Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Homo sapiens)
28s ribosomal protein s29, mitochondrial (45 kDa, Protein from Homo sapiens)
S-adenosylmethionine (398 Da, Ligand)
28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Homo sapiens)
Guanosine-5'-diphosphate (443 Da, Ligand)
Dimethyladenosine transferase 1, mitochondrial (39 kDa, Protein from Homo sapiens)
Potassium ion (39 Da, Ligand)
28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Homo sapiens)
28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Homo sapiens)
Zinc ion (65 Da, Ligand)
Methyltransferase-like protein 17, mitochondrial (50 kDa, Protein from Homo sapiens)
Aurora kinase a-interacting protein (22 kDa, Protein from Homo sapiens)
28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Homo sapiens)
28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Homo sapiens)
Adenosine-5'-triphosphate (507 Da, Ligand)
28s ribosomal protein s5, mitochondrial (48 kDa, Protein from Homo sapiens)
28s ribosomal protein s2, mitochondrial (33 kDa, Protein from Homo sapiens)
28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Homo sapiens)
28s ribosomal protein s35, mitochondrial (36 kDa, Protein from Homo sapiens)
Magnesium ion (24 Da, Ligand)
28s ribosomal protein s28, mitochondrial (20 kDa, Protein from Homo sapiens)
28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Homo sapiens)
28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Homo sapiens)
Iron/sulfur cluster (351 Da, Ligand)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Homo sapiens)
28s ribosomal protein s22, mitochondrial (41 kDa, Protein from Homo sapiens)
28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Homo sapiens)
28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from Homo sapiens)
Human mitochondrial small subunit assembly intermediate, state b (1 MDa, Complex from Homo sapiens)

[Show more]

EMD-26968

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Human mitochondrial small subunit assembly intermediate (State C)

Release date: Dec. 14, 2022
Resolution: 2.54 Å
EM Method: Single-particle
Fitted PDBs: 8csr
Q-score: 0.563

Harper NJ, Burnside C, Klinge S

Nature (2023) 614 pp. 175-181 [ DOI: doi:10.1038/s41586-022-05621-0 Pubmed: 36482135 ]

Sample:

28s ribosomal protein s24, mitochondrial (19 kDa, Protein from human)
Putative ribosome-binding factor a, mitochondrial (38 kDa, Protein from human)
Aurora kinase a-interacting protein (22 kDa, Protein from human)
28s ribosomal protein s2, mitochondrial (33 kDa, Protein from human)
28s ribosomal protein s7, mitochondrial (28 kDa, Protein from human)
Malonyl-coa-acyl carrier protein transacylase, mitochondrial (43 kDa, Protein from human)
28s ribosomal protein s25, mitochondrial (20 kDa, Protein from human)
28s ribosomal protein s33, mitochondrial (12 kDa, Protein from human)
28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from human)
28s ribosomal protein s12, mitochondrial (15 kDa, Protein from human)
28s ribosomal protein s10, mitochondrial (23 kDa, Protein from human)
Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
Methyltransferase-like protein 17, mitochondrial (50 kDa, Protein from human)
28s ribosomal protein s11, mitochondrial (20 kDa, Protein from human)
28s ribosomal protein s15, mitochondrial (29 kDa, Protein from human)
S-adenosylmethionine (398 Da, Ligand)
Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from human)
Guanosine-5'-diphosphate (443 Da, Ligand)
Potassium ion (39 Da, Ligand)
28s ribosomal protein s22, mitochondrial (41 kDa, Protein from human)
28s ribosomal protein s21, mitochondrial (10 kDa, Protein from human)
Zinc ion (65 Da, Ligand)
28s ribosomal protein s34, mitochondrial (25 kDa, Protein from human)
28s ribosomal protein s9, mitochondrial (45 kDa, Protein from human)
12s mitochondrial rrna (306 kDa, RNA from human)
28s ribosomal protein s29, mitochondrial (45 kDa, Protein from human)
Adenosine-5'-triphosphate (507 Da, Ligand)
28s ribosomal protein s17, mitochondrial (14 kDa, Protein from human)
28s ribosomal protein s26, mitochondrial (24 kDa, Protein from human)
28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from human)
Water (18 Da, Ligand)
28s ribosomal protein s35, mitochondrial (36 kDa, Protein from human)
28s ribosomal protein s16, mitochondrial (15 kDa, Protein from human)
28s ribosomal protein s27, mitochondrial (47 kDa, Protein from human)
Magnesium ion (24 Da, Ligand)
28s ribosomal protein s14, mitochondrial (15 kDa, Protein from human)
Iron/sulfur cluster (351 Da, Ligand)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Human mitochondrial small subunit assembly intermediate, state c (1 MDa, Complex from Homo sapiens)
28s ribosomal protein s23, mitochondrial (21 kDa, Protein from human)
28s ribosomal protein s31, mitochondrial (45 kDa, Protein from human)
28s ribosomal protein s6, mitochondrial (14 kDa, Protein from human)
28s ribosomal protein s28, mitochondrial (20 kDa, Protein from human)
Dimethyladenosine transferase 1, mitochondrial (39 kDa, Protein from human)
28s ribosomal protein s5, mitochondrial (48 kDa, Protein from human)

[Show more]

EMD-26971

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Human mitochondrial small subunit assembly intermediate (State C*)

Release date: Dec. 14, 2022
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 8csu
Q-score: 0.519

Harper NJ, Burnside C, Klinge S

Nature (2023) 614 pp. 175-181 [ DOI: doi:10.1038/s41586-022-05621-0 Pubmed: 36482135 ]

Sample:

28s ribosomal protein s24, mitochondrial (19 kDa, Protein from human)
Putative ribosome-binding factor a, mitochondrial (38 kDa, Protein from human)
Aurora kinase a-interacting protein (22 kDa, Protein from human)
28s ribosomal protein s2, mitochondrial (33 kDa, Protein from human)
28s ribosomal protein s7, mitochondrial (28 kDa, Protein from human)
28s ribosomal protein s25, mitochondrial (20 kDa, Protein from human)
28s ribosomal protein s33, mitochondrial (12 kDa, Protein from human)
28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from human)
28s ribosomal protein s12, mitochondrial (15 kDa, Protein from human)
28s ribosomal protein s10, mitochondrial (23 kDa, Protein from human)
Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
Methyltransferase-like protein 17, mitochondrial (50 kDa, Protein from human)
28s ribosomal protein s11, mitochondrial (20 kDa, Protein from human)
28s ribosomal protein s15, mitochondrial (29 kDa, Protein from human)
S-adenosylmethionine (398 Da, Ligand)
Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from human)
Guanosine-5'-diphosphate (443 Da, Ligand)
Potassium ion (39 Da, Ligand)
28s ribosomal protein s22, mitochondrial (41 kDa, Protein from human)
28s ribosomal protein s21, mitochondrial (10 kDa, Protein from human)
Zinc ion (65 Da, Ligand)
Human mitochondrial small subunit assembly intermediate, state c* (1 MDa, Complex from Homo sapiens)
28s ribosomal protein s34, mitochondrial (25 kDa, Protein from human)
28s ribosomal protein s9, mitochondrial (45 kDa, Protein from human)
12s mitochondrial rrna (306 kDa, RNA from human)
28s ribosomal protein s29, mitochondrial (45 kDa, Protein from human)
Adenosine-5'-triphosphate (507 Da, Ligand)
28s ribosomal protein s17, mitochondrial (14 kDa, Protein from human)
28s ribosomal protein s26, mitochondrial (24 kDa, Protein from human)
28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from human)
28s ribosomal protein s35, mitochondrial (36 kDa, Protein from human)
28s ribosomal protein s16, mitochondrial (15 kDa, Protein from human)
28s ribosomal protein s27, mitochondrial (47 kDa, Protein from human)
Magnesium ion (24 Da, Ligand)
28s ribosomal protein s14, mitochondrial (15 kDa, Protein from human)
Iron/sulfur cluster (351 Da, Ligand)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
28s ribosomal protein s23, mitochondrial (21 kDa, Protein from human)
28s ribosomal protein s31, mitochondrial (45 kDa, Protein from human)
28s ribosomal protein s6, mitochondrial (14 kDa, Protein from human)
28s ribosomal protein s28, mitochondrial (20 kDa, Protein from human)
Dimethyladenosine transferase 1, mitochondrial (39 kDa, Protein from human)
28s ribosomal protein s5, mitochondrial (48 kDa, Protein from human)

[Show more]

EMD-13551

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Assembly intermediate of mouse mitochondrial ribosome small subunit without mS37 in complex with RbfA and Tfb1m

Release date: June 15, 2022
Resolution: 3.19 Å
EM Method: Single-particle
Fitted PDBs: 7pnt
Q-score: 0.516

Itoh Y, Khawaja A, Laptev I, Cipullo M, Atanassov I, Sergiev P, Rorbach J, Amunts A

Nature (2022) 606 pp. 603-608 [ DOI: doi:10.1038/s41586-022-04795-x Pubmed: 35676484 ]

Sample:

28s ribosomal protein s26, mitochondrial (23 kDa, Protein from Mus musculus)
28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Mus musculus)
28s ribosomal protein s28, mitochondrial (20 kDa, Protein from Mus musculus)
28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Mus musculus)
Putative ribosome-binding factor a, mitochondrial (39 kDa, Protein from Mus musculus)
Aurora kinase a-interacting protein (23 kDa, Protein from Mus musculus)
28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Mus musculus)
28s ribosomal protein s24, mitochondrial (18 kDa, Protein from Mus musculus)
28s ribosomal protein s14, mitochondrial (14 kDa, Protein from Mus musculus)
28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Mus musculus)
28s ribosomal protein s17, mitochondrial (13 kDa, Protein from Mus musculus)
28s ribosomal protein s22, mitochondrial (41 kDa, Protein from Mus musculus)
Potassium ion (39 Da, Ligand)
28s ribosomal protein s9, mitochondrial (44 kDa, Protein from Mus musculus)
Zinc ion (65 Da, Ligand)
28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Mus musculus)
28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Mus musculus)
Pentatricopeptide repeat domain-containing protein 3, mitochondrial (77 kDa, Protein from Mus musculus)
28s ribosomal protein s10, mitochondrial (18 kDa, Protein from Mus musculus)
Adenosine-5'-triphosphate (507 Da, Ligand)
28s ribosomal protein s25, mitochondrial (19 kDa, Protein from Mus musculus)
28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Mus musculus)
28s ribosomal protein s29, mitochondrial (44 kDa, Protein from Mus musculus)
Water (18 Da, Ligand)
28s ribosomal protein s35, mitochondrial (36 kDa, Protein from Mus musculus)
12s mitochondrial rrna (306 kDa, RNA from Mus musculus)
28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Mus musculus)
28s ribosomal protein s31, mitochondrial (43 kDa, Protein from Mus musculus)
28s ribosomal protein s5, mitochondrial (48 kDa, Protein from Mus musculus)
Magnesium ion (24 Da, Ligand)
Assembly intermediate of small subunit of human mitochondrial ribosome (Complex from Mus musculus)
28s ribosomal protein s2, mitochondrial (32 kDa, Protein from Mus musculus)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
28s ribosomal protein s23, mitochondrial (20 kDa, Protein from Mus musculus)
28s ribosomal protein s27, mitochondrial (47 kDa, Protein from Mus musculus)
28s ribosomal protein s18c, mitochondrial (16 kDa, Protein from Mus musculus)
28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Mus musculus)
28s ribosomal protein s18b, mitochondrial (28 kDa, Protein from Mus musculus)
Dimethyladenosine transferase 1, mitochondrial (39 kDa, Protein from Mus musculus)

[Show more]

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Showing 1 - 5 of 5. Page 1 of 1

Display: Statistics

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Select database:

EMDB [5]

Format:

Select the script type:

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Preview first 10

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