Engineered human dynein motor domain in microtubule-bound state
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8fcy
Q-score: 0.461
Ton WD, Wang Y, Chai P, Beauchamp-Perez C, Flint NT, Lammers LG, Xiong H, Zhang K, Markus SM
Nat Struct Mol Biol (2023) 30 pp. 1365-1379 [ Pubmed: 37322240 DOI: doi:10.1038/s41594-023-01010-x ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Cytoplasmic dynein 1 heavy chain 1,serine--trna ligase (357 kDa, Protein from Homo sapiens)
- Engineered human dynein motor domain in microtubule-bound state (350 kDa, Complex from Homo sapiens)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8fd6
Q-score: 0.519
Ton WD, Wang Y, Chai P, Beauchamp-Perez C, Flint NT, Lammers LG, Xiong H, Zhang K, Markus SM
Nat Struct Mol Biol (2023) 30 pp. 1365-1379 [ Pubmed: 37322240 DOI: doi:10.1038/s41594-023-01010-x ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Cytoplasmic dynein 1 heavy chain 1,serine--trna ligase (357 kDa, Protein from Homo sapiens)
- Vanadate ion (114 Da, Ligand)
- Engineered human dynein motor domain in microtubule-unbound state in the buffer containing atp-vi (350 kDa, Complex from Homo sapiens)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8fdt
Q-score: 0.426
Ton WD, Wang Y, Chai P, Beauchamp-Perez C, Flint NT, Lammers LG, Xiong H, Zhang K, Markus SM
Nat Struct Mol Biol (2023) 30 pp. 1365-1379 [ Pubmed: 37322240 DOI: doi:10.1038/s41594-023-01010-x ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Engineered human dynein motor domain in microtubule-unbound state with lis1 complex in the buffer containing atp-vi (490 kDa, Complex from Homo sapiens)
- Platelet-activating factor acetylhydrolase ib subunit beta (66 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Cytoplasmic dynein 1 heavy chain 1,serine--trna ligase (357 kDa, Protein from Homo sapiens)
- Vanadate ion (114 Da, Ligand)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8fdu
Q-score: 0.431
Ton WD, Wang Y, Chai P, Beauchamp-Perez C, Flint NT, Lammers LG, Xiong H, Zhang K, Markus SM
Nat Struct Mol Biol (2023) 30 pp. 1365-1379 [ Pubmed: 37322240 DOI: doi:10.1038/s41594-023-01010-x ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Cytoplasmic dynein 1 heavy chain 1,serine--trna ligase (357 kDa, Protein from Homo sapiens)
- Engineered human dynein motor domain in microtubule-unbound state with lis1 complex in the buffer containing atp-vi (490 kDa, Complex from Homo sapiens)
- Platelet-activating factor acetylhydrolase ib subunit beta,platelet-activating factor acetylhydrolase ib subunit beta,human lis1 protein with a snap tag (66 kDa, Protein from Homo sapiens)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7mi3
Q-score: 0.441
Santarossa CC, Mickolajczyk KJ, Steinman JB, Urnavicius L, Chen N, Hirata Y, Fukase Y, Coudray N, Ekiert DC, Bhabha G, Kapoor TM
Cell Chem Biol (2021) 28 pp. 1460-1473.e15 [ Pubmed: 34015309 DOI: doi:10.1016/j.chembiol.2021.04.024 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dynein motor domain in the presence of a pyrazolo-pyrimidinone-based compound (300 kDa, Complex from Saccharomyces cerevisiae)
- (8s)-6-(3-bromophenoxy)-2-[1-(4-chlorophenyl)cyclopropyl]-7-hydroxypyrazolo[1,5-a]pyrimidine-3-carbonitrile (481 Da, Ligand)
- Fusion protein of dynein and endolysin (304 kDa, Protein from Saccharomyces cerevisiae)
Yeast dynein motor domain in the presence of a pyrazolo-pyrimidinone-based compound, Map 1
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7mi6
Q-score: 0.339
Santarossa CC, Mickolajczyk KJ, Steinman JB, Urnavicius L, Chen N, Hirata Y, Fukase Y, Coudray N, Ekiert DC, Bhabha G, Kapoor TM
Cell Chem Biol (2021) 28 pp. 1460-1473.e15 [ Pubmed: 34015309 DOI: doi:10.1016/j.chembiol.2021.04.024 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dynein motor domain in the presence of a pyrazolo-pyrimidinone-based compound (300 kDa, Complex from Saccharomyces cerevisiae)
- (8s)-6-(3-bromophenoxy)-2-[1-(4-chlorophenyl)cyclopropyl]-7-hydroxypyrazolo[1,5-a]pyrimidine-3-carbonitrile (481 Da, Ligand)
- Fusion protein of dynein and endolysin (304 kDa, Protein from Saccharomyces cerevisiae)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7mi8
Q-score: 0.427
Santarossa CC, Mickolajczyk KJ, Steinman JB, Urnavicius L, Chen N, Hirata Y, Fukase Y, Coudray N, Ekiert DC, Bhabha G, Kapoor TM
Cell Chem Biol (2021) 28 pp. 1460-1473.e15 [ Pubmed: 34015309 DOI: doi:10.1016/j.chembiol.2021.04.024 ]
Santarossa CC, Mickolajczyk KJ, Steinman JB, Urnavicius L, Chen N, Hirata Y, Fukase Y, Coudray N, Ekiert DC, Bhabha G, Kapoor TM
Cell Chem Biol (2021) 28 pp. 1460-1473.e15 [ DOI: doi:10.1016/j.chembiol.2021.04.024 Pubmed: 34015309 ]
Santarossa CC, Mickolajczyk KJ, Steinman JB, Urnavicius L, Chen N, Hirata Y, Fukase Y, Coudray N, Ekiert DC, Bhabha G, Kapoor TM
Cell Chem Biol (2021) 28 pp. 1460-1473.e15 [ Pubmed: 34015309 DOI: doi:10.1016/j.chembiol.2021.04.024 ]
Full length human cytoplasmic dynein-1 in the phi-particle conformation
Resolution: 15.0 Å
EM Method: Single-particle
Fitted PDBs: 5nvu
Q-score: 0.087
Zhang K, Foster HE, Rondelet A, Lacey SE, Bahi-Buisson N, Bird AW, Carter AP
Cell (2017) 169 pp. 1303-1314.e18 [ DOI: doi:10.1016/j.cell.2017.05.025 Pubmed: 28602352 ]
- Dynein tail heavy chain (76 kDa, Protein from Homo sapiens)
- Lc8 (7 kDa, Protein from Homo sapiens)
- Robl (10 kDa, Protein from Homo sapiens)
- N-terminal dimerization domain (10 kDa, Protein from Homo sapiens)
- Tctex (8 kDa, Protein from Homo sapiens)
- Complete human cytoplasmic dynein-1 in the phi-particle conformation (Complex from Homo sapiens)
- N-terminal dimerization domain (10 kDa, Protein from Homo sapiens)
- Intermediate chain n-terminus peptides (2 kDa, Protein from Homo sapiens)
- Dynein intermediate chain (29 kDa, Protein from Homo sapiens)
- Dynein light intermediate chain (25 kDa, Protein from Homo sapiens)
- Dynein light intermediate chain (25 kDa, Protein from Homo sapiens)
- Dynein motor domain (269 kDa, Protein from Homo sapiens)
- Tctex (8 kDa, Protein from Homo sapiens)
- Dynein tail heavy chain (79 kDa, Protein from Homo sapiens)
- Intermediate chain n-terminus peptides (2 kDa, Protein from Homo sapiens)