Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8vs9
Q-score: 0.289
Teran D, Zhang Y, Korostelev AA
Front Microbiol (2024) 15 pp. 1369760-1369760 [ Pubmed: 38500588 DOI: doi:10.3389/fmicb.2024.1369760 ]
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us17 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us15 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
- A-trna (24 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
- Ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- Ssra-binding protein (17 kDa, Protein from Escherichia coli)
- E-trna (24 kDa, RNA from Escherichia coli)
- Cryoem of tmrna and smpb bound to p site and alanyl-trna bound to a site and e-trna of 70s ribosome (Complex from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein us14 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- Small ribosomal subunit protein us9 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl17 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl33 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l1 (24 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein ul30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl9 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
- 16s ribosomal rna (498 kDa, RNA from Escherichia coli)
- Tmrn (117 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- Large ribosomal subunit protein bl31 (5 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8wib
Q-score: 0.469
Nat Commun (2024) 15 pp. 638-638 [ Pubmed: 38245551 DOI: doi:10.1038/s41467-024-44879-y ]
- 50s ribosomal protein l19 (12 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 70s ribosome (Complex)
- 30s ribosomal protein s13 (14 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l34 (5 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s4 (23 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s10 (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l15 (15 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s6 (10 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s22 (4 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s19 (10 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s7 (17 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s16 (16 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l24 (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l29 (8 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l2 (30 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l9 (15 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l14 (13 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s11 (14 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l23 (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s5 (21 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 23s rrna (1 MDa, RNA from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l35 (7 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s9 (16 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s15 (10 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l30 (7 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 5s rrna (38 kDa, RNA from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s17 (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l5 (21 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l4 (22 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l27 (9 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- E-trna (24 kDa, RNA from Mycolicibacterium smegmatis MC2 155)
- Rafh (Complex)
- 30s ribosomal protein s14a (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l18 (13 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l20 (14 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l22 (16 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 70s ribosome + rafh protein (Complex from Mycolicibacterium smegmatis MC2 155)
- 16s rrna (495 kDa, RNA from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s18b (9 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l28 (6 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s12 (13 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s20 (9 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Ribosome hibernation promotion factor rafh (29 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l17 (21 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l6 (19 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l21 (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l32 (6 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l33a (6 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l3 (23 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l31 (8 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l13 (16 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s8 (14 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s3 (30 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8wic
Q-score: 0.479
Nat Commun (2024) 15 pp. 638-638 [ DOI: doi:10.1038/s41467-024-44879-y Pubmed: 38245551 ]
- 70s ribosome + rafh protein (Complex from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l19 (12 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l20 (14 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l23 (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l14 (13 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l22 (16 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l28 (6 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l2 (30 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l6 (19 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l35 (7 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l24 (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- E-trna (24 kDa, RNA from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l31 (8 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l30 (7 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 23s rrna (1 MDa, RNA from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l13 (16 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l4 (22 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l21 (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 5s rrna (38 kDa, RNA from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l32 (6 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l17 (21 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l33a (6 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l29 (8 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l15 (15 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l27 (9 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l34 (5 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l3 (23 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l18 (13 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l9 (15 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l5 (21 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8wid
Q-score: 0.486
Nat Commun (2024) 15 pp. 638-638 [ Pubmed: 38245551 DOI: doi:10.1038/s41467-024-44879-y ]
- 30s ribosomal protein s13 (14 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s4 (23 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s10 (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s6 (10 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s22 (4 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s19 (10 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s7 (17 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s16 (16 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s11 (14 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s5 (21 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s9 (16 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s15 (10 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s17 (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Rafh (Complex)
- 30s ribosomal protein s14a (11 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 16s rrna (491 kDa, RNA from Mycolicibacterium smegmatis MC2 155)
- 70s ribosome + rafh protein (Complex from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s18b (9 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s12 (13 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s20 (9 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Ribosome hibernation promotion factor rafh (29 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 70s ribosome (Complex)
- E -trna (24 kDa, RNA from Mycolicibacterium smegmatis MC2 155)
- 50s ribosomal protein l31 (8 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s8 (14 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- 30s ribosomal protein s3 (30 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
Nucleic Acids Res (2024) 52 pp. 4053-4066 [ DOI: doi:10.1093/nar/gkae128 Pubmed: 38407413 ]
Nucleic Acids Res (2024) 52 pp. 4053-4066 [ DOI: doi:10.1093/nar/gkae128 Pubmed: 38407413 ]
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8uu5
Q-score: 0.552
Nucleic Acids Res (2024) 52 pp. 4053-4066 [ Pubmed: 38407413 DOI: doi:10.1093/nar/gkae128 ]
- Listeria innocua 70s ribosome in complex with pe/e-trna (2 MDa, Complex from Listeria innocua)
- Small ribosomal subunit protein us5 (17 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us7 (17 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul6 (19 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul13 (16 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul2 (30 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl33 (6 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl20 (13 kDa, Protein from Listeria innocua)
- 5s ribosomal rna (37 kDa, RNA from Listeria innocua)
- Large ribosomal subunit protein bl27 (10 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl31b (9 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us12 (15 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul16 (16 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl19 (13 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us19 (10 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us17 (10 kDa, Protein from Listeria innocua)
- 23s ribosomal rna (951 kDa, RNA from Listeria innocua)
- Large ribosomal subunit protein ul30 (6 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein bs6 (11 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul3 (22 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul15 (15 kDa, Protein from Listeria innocua)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl21 (11 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl34 (5 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us9 (14 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl36 (4 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul4 (22 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul24 (11 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us4 (22 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl32 (6 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us15 (10 kDa, Protein from Listeria innocua)
- 16s ribosomal rna (501 kDa, RNA from Listeria innocua)
- Small ribosomal subunit protein us13 (13 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul23 (10 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul14 (13 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul18 (13 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us11 (13 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul22 (12 kDa, Protein from Listeria innocua)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein us3 (24 kDa, Protein from Listeria innocua)
- F-stop mrna (6 kDa, RNA from Escherichia phage T4)
- Large ribosomal subunit protein bl17 (15 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl28 (7 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us2 (28 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein bs18 (9 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein bs20 (9 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Listeria innocua)
- Water (18 Da, Ligand)
- Large ribosomal subunit protein ul29 (7 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein bs16 (10 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl35 (7 kDa, Protein from Listeria innocua)
- Pe/e hybrid state phenylalanine trna (24 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein us14 (7 kDa, Protein from Listeria innocua)
Refined map of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)
Nucleic Acids Res (2024) 52 pp. 4053-4066 [ DOI: doi:10.1093/nar/gkae128 Pubmed: 38407413 ]
Nucleic Acids Res (2024) 52 pp. 4053-4066 [ DOI: doi:10.1093/nar/gkae128 Pubmed: 38407413 ]
Nucleic Acids Res (2024) 52 pp. 4053-4066 [ DOI: doi:10.1093/nar/gkae128 Pubmed: 38407413 ]