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sample_name:"GUANOSINE-5'-MONOPHOSPHATE" AND database:"EMDB"
Cryo-EM Structure of Chikungunya Virus Nonstructural Protein 1 with m7GMP
Release date: July 27, 2022
Resolution: 2.18 Å
EM Method: Single-particle
Fitted PDBs: 7fgh
Q-score: 0.688
Resolution: 2.18 Å
EM Method: Single-particle
Fitted PDBs: 7fgh
Q-score: 0.688
Zhang K, Law MCY, Nguyen TM, Tan YB, Wirawan M, Law YS, Jeong LS, Luo D
Cell Rep (2022) 40 pp. 111133-111133 [ Pubmed: 35905713 DOI: doi:10.1016/j.celrep.2022.111133 ]
Sample:
- Nonstructural protein 1 (Complex from Chikungunya virus strain S27-African prototype)
- N7-methyl-guanosine-5'-monophosphate (378 Da, Ligand)
- S-adenosyl-l-homocysteine (384 Da, Ligand)
- Water (18 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Mrna-capping enzyme nsp1 (62 kDa, Protein from Chikungunya virus strain S27-African prototype)
Release date: April 27, 2022
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7tql
Q-score: 0.412
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7tql
Q-score: 0.412
Lapointe CP, Grosely R, Sokabe M, Alvarado C, Wang J, Montabana E, Villa N, Shin BS, Dever TE, Fraser CS, Fernandez IS, Puglisi JD
Nature (2022) 607 pp. 185-190 [ Pubmed: 35732735 DOI: doi:10.1038/s41586-022-04858-z ]
Sample:
- 40s ribosomal protein s3 (24 kDa, Protein from Homo sapiens)
- Ribosomal protein es17 (15 kDa, Protein from Homo sapiens)
- Isoform 3 of 40s ribosomal protein s24 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s15 (13 kDa, Protein from Homo sapiens)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
- Ribosomal protein es25 (8 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s26 (11 kDa, Protein from Homo sapiens)
- Ribosomal protein us2 (47 kDa, Protein from Homo sapiens)
- Human 40s ribosomal subunit in complex with eif1a and eif5b (Cell from Homo sapiens)
- 40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Translation initiation factor eif1a (10 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s8 (23 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s16 (15 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s5 (21 kDa, Protein from Homo sapiens)
- Ribosomal protein es28 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s27a (7 kDa, Protein from Homo sapiens)
- Ribosomal protein es12 (13 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s2 (24 kDa, Protein from Homo sapiens)
- Eukaryotic translation initiation factor 5b (69 kDa, Protein from Homo sapiens)
- Ribosomal protein us13 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s19 (15 kDa, Protein from Homo sapiens)
- 18s ribosomal rna (534 kDa, RNA from Homo sapiens)
- Receptor of activated protein c kinase 1 (34 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s9 (21 kDa, Protein from Homo sapiens)
- Ribosomal protein us15 (16 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s21 (8 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
- Ribosomal protein us11 (14 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s7 (21 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s6 (26 kDa, Protein from Homo sapiens)
- Ribosomal protein es30 (5 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s11 (17 kDa, Protein from Homo sapiens)
- Ribosomal protein us14 (6 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s10 (11 kDa, Protein from Homo sapiens)
- Ribosomal protein el41 (2 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
- Human met-trnaimet (24 kDa, RNA from Homo sapiens)
- Ribosomal protein us10 (11 kDa, Protein from Homo sapiens)
Release date: Nov. 17, 2021
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7pd3
Q-score: 0.394
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7pd3
Q-score: 0.394
Chandrasekaran V, Desai N, Burton NO, Yang H, Price J, Miska EA, Ramakrishnan V
eLife (2021) 10 [ Pubmed: 34609277 DOI: doi:10.7554/eLife.68806 ]
Sample:
- 39s ribosomal protein l22, mitochondrial (23 kDa, Protein from Human)
- 39s ribosomal protein l42, mitochondrial (16 kDa, Protein from Human)
- 39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Human)
- 39s ribosomal protein l40, mitochondrial (24 kDa, Protein from Human)
- 39s ribosomal protein l49, mitochondrial (19 kDa, Protein from Human)
- 16s rrna (500 kDa, RNA from Human)
- S-adenosylmethionine (398 Da, Ligand)
- 39s ribosomal protein l20, mitochondrial (17 kDa, Protein from Human)
- 39s ribosomal protein l11, mitochondrial (20 kDa, Protein from Human)
- 39s ribosomal protein l48, mitochondrial (23 kDa, Protein from Human)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Human)
- 39s ribosomal protein l10, mitochondrial (29 kDa, Protein from Human)
- 39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Human)
- Acyl carrier protein, mitochondrial (17 kDa, Protein from Human)
- Mitochondrial assembly of ribosomal large subunit protein 1 (26 kDa, Protein from Human)
- 39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Human)
- 39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Human)
- 39s ribosomal protein l43, mitochondrial (23 kDa, Protein from Human)
- Uridine-5'-monophosphate (324 Da, Ligand)
- Cytidine-5'-monophosphate (323 Da, Ligand)
- 39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Human)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 39s ribosomal protein l27, mitochondrial (16 kDa, Protein from Human)
- Adenosine-5'-monophosphate (347 Da, Ligand)
- 39s ribosomal protein l47, mitochondrial (29 kDa, Protein from Human)
- Transcription termination factor 4, mitochondrial (44 kDa, Protein from Human)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Human)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Human)
- Mitochondrial ribosome-associated gtpase 1 (37 kDa, Protein from Human)
- Ribosomal protein 63, mitochondrial (12 kDa, Protein from Human)
- 39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Human)
- 39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Human)
- 39s ribosomal protein l46, mitochondrial (31 kDa, Protein from Human)
- Mt-trnaval (22 kDa, RNA from Human)
- 39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Human)
- 39s ribosomal protein l39, mitochondrial (38 kDa, Protein from Human)
- 39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from Human)
- 39s ribosomal protein l18, mitochondrial (20 kDa, Protein from Human)
- 39s ribosomal protein l50, mitochondrial (18 kDa, Protein from Human)
- 4'-phosphopantetheine (358 Da, Ligand)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Human)
- 39s ribosomal protein l45, mitochondrial (35 kDa, Protein from Human)
- Zinc ion (65 Da, Ligand)
- 39s ribosomal protein l36, mitochondrial (11 kDa, Protein from Human)
- 39s ribosomal protein l21, mitochondrial (22 kDa, Protein from Human)
- 39s ribosomal protein l32, mitochondrial (21 kDa, Protein from Human)
- 39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Human)
- Pseudouridine-5'-monophosphate (324 Da, Ligand)
- 39s ribosomal protein l28, mitochondrial (30 kDa, Protein from Human)
- Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Human)
- Growth arrest and dna damage-inducible proteins-interacting protein 1 (25 kDa, Protein from Human)
- 5-methylcytosine rrna methyltransferase nsun4 (43 kDa, Protein from Human)
- 39s ribosomal protein l4, mitochondrial (34 kDa, Protein from Human)
- 39s ribosomal protein l19, mitochondrial (33 kDa, Protein from Human)
- 39s ribosomal protein l53, mitochondrial (12 kDa, Protein from Human)
- 39s ribosomal protein l37, mitochondrial (48 kDa, Protein from Human)
- 39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Human)
- Human mitoribosomal large subunit assembly intermediate (Complex from Homo sapiens)
- 39s ribosomal protein l14, mitochondrial (15 kDa, Protein from Human)
- 39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Human)
- 39s ribosomal protein l3, mitochondrial (38 kDa, Protein from Human)
- Ml65 (2 kDa, Protein from Human)
- O2'-methylguanosine-5'-monophosphate (377 Da, Ligand)
- 39s ribosomal protein s30, mitochondrial (50 kDa, Protein from Human)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Human)
- 39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Human)
- Mief1 upstream open reading frame protein (8 kDa, Protein from Human)
- 39s ribosomal protein l17, mitochondrial (20 kDa, Protein from Human)
- 39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Human)
55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)
Release date: June 2, 2021
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 7nsi
Q-score: 0.228
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 7nsi
Q-score: 0.228
Kummer E, Schubert KN, Schoenhut T, Scaiola A, Ban N
Mol Cell (2021) 81 pp. 2566-2582.e6 [ Pubmed: 33878294 DOI: doi:10.1016/j.molcel.2021.03.042 ]
Sample:
- 39s ribosomal protein l21, mitochondrial isoform d (23 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Pig)
- 39s ribosomal protein l11, mitochondrial isoform a (20 kDa, Protein from Pig)
- 39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Pig)
- 39s ribosomal protein l28, mitochondrial (30 kDa, Protein from Pig)
- Ict1 (43 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l40 (24 kDa, Protein from Pig)
- 39s ribosomal protein l50, mitochondrial (22 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l55 (15 kDa, Protein from Pig)
- 39s ribosomal protein l17, mitochondrial (19 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Pig)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- 39s ribosomal protein l20, mitochondrial isoform 1 (17 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Pig)
- Ribosome-recycling factor, mitochondrial (Complex from Homo sapiens)
- Death associated protein 3 (46 kDa, Protein from Pig)
- Unknown (1 kDa, Protein from Pig)
- Water (18 Da, Ligand)
- 39s ribosomal protein l37, mitochondrial (47 kDa, Protein from Pig)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Pig)
- 39s ribosomal protein l43, mitochondrial isoform x2 (17 kDa, Protein from Pig)
- 39s ribosomal protein l27, mitochondrial (15 kDa, Protein from Pig)
- Mitoribosomal protein us12m, mrps12 (15 kDa, Protein from Pig)
- 55s mammalian mitochondrial ribosome with mtrrf (pre) and trna(p/e) (Complex)
- 39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Pig)
- 55s mammalian mitochondrial ribosome (Complex from Sus scrofa)
- Coiled-coil-helix-coiled-coil-helix domain containing 1 (13 kDa, Protein from Pig)
- 28s ribosomal protein s26, mitochondrial (23 kDa, Protein from Pig)
- Bl32m (21 kDa, Protein from Pig)
- 39s ribosomal protein l10, mitochondrial isoform a (29 kDa, Protein from Pig)
- 39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l58 (23 kDa, Protein from Pig)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Pig)
- 39s ribosomal protein l24, mitochondrial isoform x1 (24 kDa, Protein from Pig)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Pig)
- Pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,ms39,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3 (76 kDa, Protein from Pig)
- 39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s27 (51 kDa, Protein from Pig)
- 39s ribosomal protein l19, mitochondrial (33 kDa, Protein from Pig)
- 28s ribosomal protein s24, mitochondrial (18 kDa, Protein from Pig)
- 28s ribosomal protein s18c, mitochondrial isoform 1 (16 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s23 (21 kDa, Protein from Pig)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Pig)
- Us17m (14 kDa, Protein from Pig)
- 39s ribosomal protein l22, mitochondrial (24 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Pig)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s11 (20 kDa, Protein from Pig)
- 28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Pig)
- 28s ribosomal protein s35, mitochondrial isoform 1 (37 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s34 (25 kDa, Protein from Pig)
- Tgs domain-containing protein (38 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Pig)
- Ribosomal_l2_c domain-containing protein (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Pig)
- 28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Pig)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- 39s ribosomal protein l49, mitochondrial (18 kDa, Protein from Pig)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Pig)
- 39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Pig)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Pig)
- 39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Pig)
- 39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Pig)
- Ml42 (16 kDa, Protein from Pig)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein (10 kDa, Protein from Pig)
- 28s ribosomal protein s31, mitochondrial (44 kDa, Protein from Pig)
- 39s ribosomal protein l18, mitochondrial isoform 1 (20 kDa, Protein from Pig)
- Ribosome-recycling factor, mitochondrial (28 kDa, Protein from Homo sapiens)
- 12s rrna (308 kDa, RNA from Pig)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Pig)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Pig)
- 28s ribosomal protein s5, mitochondrial isoform x2 (48 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s33 (12 kDa, Protein from Pig)
- 28s ribosomal protein s28, mitochondrial (21 kDa, Protein from Pig)
- Ml53 (12 kDa, Protein from Pig)
- 28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Pig)
- Ul14m (15 kDa, Protein from Pig)
- 39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Pig)
- Cp trnaphe (23 kDa, RNA from Pig)
- 39s ribosomal protein l46, mitochondrial (32 kDa, Protein from Pig)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Pig)
- Spermine (202 Da, Ligand)
- 39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Pig)
- Zinc ion (65 Da, Ligand)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Pig)
- Interferon alpha-inducible protein 6 (19 kDa, Protein from Pig)
- 28s ribosomal protein s2, mitochondrial (31 kDa, Protein from Pig)
- Mrna (1 kDa, RNA from Pig)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Pig)
- Trna (p/e) (21 kDa, RNA from Pig)
- 28s ribosomal protein s15, mitochondrial (27 kDa, Protein from Pig)
- 39s ribosomal protein l59, mitochondrial (25 kDa, Protein from Pig)
- 16s rrna (504 kDa, RNA from Pig)
- Mitochondrial ribosomal protein s6 (30 kDa, Protein from Pig)
55S mammalian mitochondrial ribosome with tRNA(P/P) and tRNA(E*)
Release date: June 2, 2021
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7nsj
Q-score: 0.345
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7nsj
Q-score: 0.345
Kummer E, Schubert KN, Schoenhut T, Scaiola A, Ban N
Mol Cell (2021) 81 pp. 2566-2582.e6 [ Pubmed: 33878294 DOI: doi:10.1016/j.molcel.2021.03.042 ]
Sample:
- 55s mammalian mitochondrial ribosome with trna(p/p) and trna(e*) (Complex from Sus scrofa)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Pig)
- Ul24m (24 kDa, Protein from Pig)
- Ml62 (ict1) (23 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Pig)
- Ict1 (43 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l40 (24 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Pig)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Pig)
- Death associated protein 3 (46 kDa, Protein from Pig)
- Unknown (1 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s35 (37 kDa, Protein from Pig)
- Water (18 Da, Ligand)
- Ul2m (33 kDa, Protein from Pig)
- Us11m (20 kDa, Protein from Pig)
- Ul30m (18 kDa, Protein from Pig)
- Bl33m (7 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Pig)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Pig)
- Bl32m (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Pig)
- Ms37 (13 kDa, Protein from Pig)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s27 (51 kDa, Protein from Pig)
- Pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,ms39,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3 (76 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Pig)
- Us9m (45 kDa, Protein from Pig)
- Us17m (14 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Pig)
- Bs21m (10 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Pig)
- Ml44 (37 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Pig)
- Mrna (1 kDa, RNA from Pig)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Pig)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Pig)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Bs6m (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Pig)
- Ml54 (15 kDa, Protein from Pig)
- Ul22m (24 kDa, Protein from Pig)
- Ul15m (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Pig)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Pig)
- Ml52 (13 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Pig)
- Ml42 (16 kDa, Protein from Pig)
- Ms23 (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Pig)
- Bl17m (19 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Pig)
- Magnesium ion (24 Da, Ligand)
- Ul23m (17 kDa, Protein from Pig)
- Ribosomal protein (10 kDa, Protein from Pig)
- 28s ribosomal protein s31, mitochondrial (44 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Pig)
- 12s rrna (308 kDa, RNA from Pig)
- Mrpl34 (18 kDa, Protein from Pig)
- Ml64 (25 kDa, Protein from Pig)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Pig)
- 28s ribosomal protein s5, mitochondrial isoform x2 (48 kDa, Protein from Pig)
- Ml53 (12 kDa, Protein from Pig)
- Us15m (27 kDa, Protein from Pig)
- Ul14m (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Pig)
- Cp trnaphe (23 kDa, RNA from Pig)
- Ms33 (12 kDa, Protein from Pig)
- Spermine (202 Da, Ligand)
- Ms34 (25 kDa, Protein from Pig)
- Bl31m (15 kDa, Protein from Pig)
- Zinc ion (65 Da, Ligand)
- Ul13m (20 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Pig)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Pig)
- 16s rrna (504 kDa, RNA from Pig)
- Trna(p/p) and trna(e*) (21 kDa, RNA from Pig)
- Ul16m (28 kDa, Protein from Pig)
55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet
Release date: May 5, 2021
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7nqh
Q-score: 0.421
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7nqh
Q-score: 0.421
Kummer E, Schubert KN, Schoenhut T, Scaiola A, Ban N
Mol Cell (2021) 81 pp. 2566-2582.e6 [ DOI: doi:10.1016/j.molcel.2021.03.042 Pubmed: 33878294 ]
Sample:
- Ms34 (25 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Pig)
- Ml62 (ict1) (23 kDa, Protein from Pig)
- 28s ribosomal protein s7, mitochondrial (27 kDa, Protein from Pig)
- Pentatricopeptide repeat domain 3 (79 kDa, Protein from Pig)
- Bs6m (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Pig)
- Ul22m (24 kDa, Protein from Pig)
- Unknown (1 kDa, Protein from Pig)
- Ml42 (16 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Pig)
- Ribosomal protein (10 kDa, Protein from Pig)
- Rna (Complex from Homo sapiens)
- Spermine (202 Da, Ligand)
- 16s rrna (504 kDa, RNA from Pig)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s5 (48 kDa, Protein from Pig)
- Ul15m (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Pig)
- Ml40 (24 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Pig)
- Bl32m (21 kDa, Protein from Pig)
- Ul30m (18 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Pig)
- Ict1 (43 kDa, Protein from Pig)
- Death associated protein 3 (46 kDa, Protein from Pig)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Pig)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Pig)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Pig)
- Us15m (27 kDa, Protein from Pig)
- Bl17m (19 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Pig)
- Us11m (20 kDa, Protein from Pig)
- Mrna (2 kDa, RNA from Homo sapiens)
- Ml52 (13 kDa, Protein from Pig)
- Ml44 (37 kDa, Protein from Pig)
- Ml64 (25 kDa, Protein from Pig)
- Translation termination complex of mitochondrial ribosome (Complex from Sus scrofa)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Pig)
- Mrpl34 (18 kDa, Protein from Pig)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Pig)
- Ml53 (12 kDa, Protein from Pig)
- Bl33m (7 kDa, Protein from Pig)
- Peptide chain release factor 1-like, mitochondrial (41 kDa, Protein from Homo sapiens)
- Trna(phe) in lsu (23 kDa, RNA from Pig)
- Bs21m (10 kDa, Protein from Pig)
- Ul16m (28 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Pig)
- Ul14m (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Pig)
- Us9m (45 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Pig)
- Zinc ion (65 Da, Ligand)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Pig)
- Ms37 (13 kDa, Protein from Pig)
- Peptide chain release factor 1-like, mitochondrial (Complex from Homo sapiens)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Pig)
- 12s rrna (308 kDa, RNA from Pig)
- Mitochondrial ribosomal protein s35 (37 kDa, Protein from Pig)
- Water (18 Da, Ligand)
- Ms33 (12 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Pig)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Pig)
- Ul2m (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Pig)
- Us17m (14 kDa, Protein from Pig)
- Ml54 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s31 (44 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Pig)
- Bl31m (15 kDa, Protein from Pig)
- Ul13m (20 kDa, Protein from Pig)
- Ul24m (24 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s27 (51 kDa, Protein from Pig)
- Magnesium ion (24 Da, Ligand)
- Ul23m (17 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Pig)
- Translation termination complex of mitochondrial ribosome with release factor mtrf1a and p-site trnamet (Complex)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Pig)
- Ms23 (21 kDa, Protein from Pig)
- Trnamet (22 kDa, RNA from Homo sapiens)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Pig)
55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet
Release date: May 5, 2021
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7nql
Q-score: 0.437
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7nql
Q-score: 0.437
Kummer E, Schubert KN, Schoenhut T, Scaiola A, Ban N
Mol Cell (2021) 81 pp. 2566-2582.e6 [ DOI: doi:10.1016/j.molcel.2021.03.042 Pubmed: 33878294 ]
Sample:
- Unknown (1 kDa, Protein from unidentified)
- Mitochondrial ribosomal protein s27 (51 kDa, Protein from Sus scrofa)
- Bl17m (19 kDa, Protein from Sus scrofa)
- Ul24m (24 kDa, Protein from Sus scrofa)
- Bl31m (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l40 (24 kDa, Protein from Sus scrofa)
- Ul13m (20 kDa, Protein from Sus scrofa)
- Us11m (20 kDa, Protein from Sus scrofa)
- Fmet-trnamet (p site) (22 kDa, RNA from Homo sapiens)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s35 (37 kDa, Protein from Sus scrofa)
- Rna (Complex from Homo sapiens)
- Ml53 (12 kDa, Protein from Sus scrofa)
- Ms33 (12 kDa, Protein from Sus scrofa)
- Spermine (202 Da, Ligand)
- Ms34 (25 kDa, Protein from Sus scrofa)
- Ul16m (28 kDa, Protein from Sus scrofa)
- Ml52 (13 kDa, Protein from Sus scrofa)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
- Ul14m (15 kDa, Protein from Sus scrofa)
- Ict1 (43 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Sus scrofa)
- Ml62 (ict1) (23 kDa, Protein from Sus scrofa)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Bl32m (21 kDa, Protein from Sus scrofa)
- Ml64 (25 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
- Ml44 (37 kDa, Protein from Sus scrofa)
- Mrna (1 kDa, RNA from Homo sapiens)
- Ul22m (24 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s5 (48 kDa, Protein from Sus scrofa)
- Cp trnaphe (23 kDa, RNA from Sus scrofa)
- Peptidyl-trna hydrolase ict1, mitochondrial (20 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
- Ul2m (33 kDa, Protein from Sus scrofa)
- Mrpl34 (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
- Ul15m (33 kDa, Protein from Sus scrofa)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
- Ms23 (21 kDa, Protein from Sus scrofa)
- Ml42 (16 kDa, Protein from Sus scrofa)
- Ul30m (18 kDa, Protein from Sus scrofa)
- Us17m (14 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s31 (44 kDa, Protein from Sus scrofa)
- Death associated protein 3 (46 kDa, Protein from Sus scrofa)
- Bl33m (7 kDa, Protein from Sus scrofa)
- 16s rrna (504 kDa, RNA from Sus scrofa)
- 12s rrna (308 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Sus scrofa)
- Ict1 (Complex from Homo sapiens)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Sus scrofa)
- Water (18 Da, Ligand)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Sus scrofa)
- Ribosomal protein (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
- 55s mammalian mitochondrial ribosome (Complex from Sus scrofa)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Sus scrofa)
- Ml54 (15 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Us9m (45 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
- Bs6m (30 kDa, Protein from Sus scrofa)
- Unknown (Complex from unidentified)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Sus scrofa)
- Ul23m (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
- Bs21m (10 kDa, Protein from Sus scrofa)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Sus scrofa)
- Pentatricopeptide repeat domain 3 (79 kDa, Protein from Sus scrofa)
- Ms37 (13 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
- 55s mammalian mitochondrial ribosome with ict1 and p site fmet-trnamet (Complex)
- Us15m (27 kDa, Protein from Sus scrofa)
39S mammalian mitochondrial large ribosomal subunit with mtRRF (post) and mtEFG2
Release date: May 5, 2021
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7nsh
Q-score: 0.49
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7nsh
Q-score: 0.49
Kummer E, Schubert KN, Schoenhut T, Scaiola A, Ban N
Mol Cell (2021) 81 pp. 2566-2582.e6 [ Pubmed: 33878294 DOI: doi:10.1016/j.molcel.2021.03.042 ]
Sample:
- Bl32m (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Pig)
- Ml53 (12 kDa, Protein from Pig)
- Ul24m (24 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Pig)
- Ul14m (15 kDa, Protein from Pig)
- Ml62 (ict1) (23 kDa, Protein from Pig)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Pig)
- Ml54 (15 kDa, Protein from Pig)
- Ml64 (25 kDa, Protein from Pig)
- Cp trnaphe (23 kDa, RNA from Pig)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Pig)
- Ict1 (43 kDa, Protein from Pig)
- Ul15m (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l40 (24 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Pig)
- Ul22m (24 kDa, Protein from Pig)
- 39s mammalian mitochondrial large ribosomal subunit with mtrrf (post) and mtefg2 (Complex)
- Spermine (202 Da, Ligand)
- Bl31m (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Pig)
- Ml52 (13 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Pig)
- Ribosome-releasing factor 2, mitochondrial (83 kDa, Protein from Homo sapiens)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Mtrrf (post) and mtefg2 (Complex from Homo sapiens)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Pig)
- Ul13m (20 kDa, Protein from Pig)
- Ml42 (16 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Pig)
- Water (18 Da, Ligand)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Pig)
- Ul2m (33 kDa, Protein from Pig)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Bl17m (19 kDa, Protein from Pig)
- Ul30m (18 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Pig)
- Magnesium ion (24 Da, Ligand)
- Ul23m (17 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Pig)
- Bl33m (7 kDa, Protein from Pig)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Pig)
- Ribosomal protein (10 kDa, Protein from Pig)
- 39s mammalian mitochondrial large ribosomal subunit (Complex from Sus scrofa)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Pig)
- Ribosome-recycling factor, mitochondrial (28 kDa, Protein from Homo sapiens)
- 16s rrna (504 kDa, RNA from Pig)
- Mrpl34 (18 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Pig)
- Ml44 (37 kDa, Protein from Pig)
- Ul16m (28 kDa, Protein from Pig)
55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
Release date: July 15, 2020
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6ydp
Q-score: 0.484
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6ydp
Q-score: 0.484
EMBO J (2020) 39 pp. e104820-e104820 [ Pubmed: 32602580 DOI: doi:10.15252/embj.2020104820 ]
Sample:
- Mrna (1 kDa, RNA from Homo sapiens)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Pig)
- Ml62 (ict1) (23 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Pig)
- Ict1 (38 kDa, Protein from Pig)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Pentatricopeptide repeat domain 3 (79 kDa, Protein from Pig)
- Bs6m (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Pig)
- Ribosomal protein (10 kDa, Protein from Pig)
- Ml42 (16 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Pig)
- Spermine (202 Da, Ligand)
- Bl33m (7 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s5 (48 kDa, Protein from Pig)
- Ms23 (21 kDa, Protein from Pig)
- Ul15m (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Pig)
- Mrpl34 (18 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Pig)
- Bl32m (21 kDa, Protein from Pig)
- 55s s. scrofa mitochondrial ribosome in complex with mtefg1 and fmet-trnamet (1 MDa, Complex)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Pig)
- Unknown peptide (1 kDa, Protein from Pig)
- Fmet-trnamet (p site) and mrna (Complex from Homo sapiens)
- Ul22m (24 kDa, Protein from Pig)
- 55s s. scrofa mitochondrial ribosome (Complex from Sus scrofa)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Pig)
- Ml53 (12 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Pig)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Pig)
- Cp trnaphe (23 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Pig)
- Us11m (20 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Pig)
- Ml44 (37 kDa, Protein from Pig)
- Ml64 (25 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s31 (44 kDa, Protein from Pig)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Pig)
- Uncharacterized protein (19 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Pig)
- Elongation factor g, mitochondrial (80 kDa, Protein from Homo sapiens)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Pig)
- Bs21m (10 kDa, Protein from Pig)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Pig)
- N-formylmethionine (177 Da, Ligand)
- Ul16m (28 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Pig)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Pig)
- Death associated protein 3 (46 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Pig)
- Us9m (45 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Pig)
- Uncharacterized protein (24 kDa, Protein from Pig)
- 12s rrna (5 MDa, RNA from Pig)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Pig)
- Zinc ion (65 Da, Ligand)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Pig)
- Ms37 (13 kDa, Protein from Pig)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s35 (37 kDa, Protein from Pig)
- Water (18 Da, Ligand)
- Ms33 (12 kDa, Protein from Pig)
- Ul23m (17 kDa, Protein from Pig)
- Fmet-trnamet (p site) (22 kDa, RNA from Homo sapiens)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Pig)
- Ms34 (25 kDa, Protein from Pig)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Pig)
- Ul2m (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Pig)
- Us17m (14 kDa, Protein from Pig)
- Ul24m (24 kDa, Protein from Pig)
- Ml54 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Pig)
- Us15m (27 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Pig)
- Ul30m (18 kDa, Protein from Pig)
- Bl31m (15 kDa, Protein from Pig)
- Ul13m (20 kDa, Protein from Pig)
- Magnesium ion (24 Da, Ligand)
- Mitochondrial ribosomal protein s27 (49 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Pig)
- Ul14m (15 kDa, Protein from Pig)
- Ml52 (13 kDa, Protein from Pig)
- Elongation factor g, mitochondrial (Complex from Homo sapiens)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Pig)
55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
Release date: July 15, 2020
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6ydw
Q-score: 0.31
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6ydw
Q-score: 0.31
EMBO J (2020) 39 pp. e104820-e104820 [ DOI: doi:10.15252/embj.2020104820 Pubmed: 32602580 ]
Sample:
- Uncharacterized protein (28 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Pig)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Pig)
- Uncharacterized protein (24 kDa, Protein from Pig)
- 55s s. scrofa mitochondrial ribosome (Complex from Sus scrofa)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s31 (44 kDa, Protein from Pig)
- Uncharacterized protein (16 kDa, Protein from Pig)
- 12s rrna (5 MDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Pig)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Uncharacterized protein (37 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s35 (37 kDa, Protein from Pig)
- Water (18 Da, Ligand)
- Mitochondrial ribosomal protein s27 (51 kDa, Protein from Pig)
- Us11m (20 kDa, Protein from Pig)
- Ict1 (38 kDa, Protein from Pig)
- Trnamet and mrna (Complex from Homo sapiens)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Pig)
- Ms34 (25 kDa, Protein from Pig)
- Uncharacterized protein (17 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Pig)
- 55s s. scrofa mitochondrial ribosome in complex with mtefg1, two trna-met and cugaug mrna (2 MDa, Complex)
- Uncharacterized protein (23 kDa, Protein from Pig)
- Uncharacterized protein (15 kDa, Protein from Pig)
- N-formylmethionine (177 Da, Ligand)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Pig)
- Trnamet (22 kDa, RNA from Homo sapiens)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Pig)
- Mrpl34 (18 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s5 (48 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Pig)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Ms37 (13 kDa, Protein from Pig)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Pig)
- Ms39 (78 kDa, Protein from Pig)
- Uncharacterized protein (19 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Pig)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Pig)
- Elongation factor g, mitochondrial (Complex from Homo sapiens)
- Uncharacterized protein (15 kDa, Protein from Pig)
- Us17m (14 kDa, Protein from Pig)
- Uncharacterized protein (15 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Pig)
- Bs21m (10 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Pig)
- Unknown peptide (1 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Pig)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Pig)
- Us15m (27 kDa, Protein from Pig)
- Mrna (1 kDa, RNA from Homo sapiens)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Pig)
- Uncharacterized protein (33 kDa, Protein from Pig)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Pig)
- Elongation factor g, mitochondrial (80 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Pig)
- Uncharacterized protein (18 kDa, Protein from Pig)
- Uncharacterized protein (24 kDa, Protein from Pig)
- Magnesium ion (24 Da, Ligand)
- Ms23 (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Pig)
- Uncharacterized protein (45 kDa, Protein from Pig)
- Ml53 (12 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Pig)
- Uncharacterized protein (24 kDa, Protein from Pig)
- Uncharacterized protein (20 kDa, Protein from Pig)
- Uncharacterized protein (33 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Pig)
- Ms33 (12 kDa, Protein from Pig)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Pig)
- Spermine (202 Da, Ligand)
- Ribosomal protein (10 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Pig)
- Cp trna-phe (23 kDa, RNA from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- Uncharacterized protein (13 kDa, Protein from Pig)
- Uncharacterized protein (21 kDa, Protein from Pig)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Pig)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Uncharacterized protein (30 kDa, Protein from Pig)
- Uncharacterized protein (7 kDa, Protein from Pig)
- Uncharacterized protein (25 kDa, Protein from Pig)
- Death associated protein 3 (46 kDa, Protein from Pig)