EMDB < Search results

EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"GUANOSINE-5'-TRIPHOSPHATE" AND author_orcid:"0000-0003-0930-4249" AND release_date:[2023-01-01T00:00:00Z TO 2023-12-31T23:59:59Z]

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EMD-29263

Download Map 3D View Raw data

Human nucleolar pre-60S ribosomal subunit (State H) - Composite map

Release date: July 12, 2023
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 8fl0
Q-score: 0.49

Vanden Broeck A, Klinge S

Science (2023) 381 pp. eadh3892-eadh3892 [ Pubmed: 37410842 DOI: doi:10.1126/science.adh3892 ]

Sample:

60s ribosomal protein l11 (20 kDa, Protein from Homo sapiens)
60s ribosomal protein l32 (15 kDa, Protein from Homo sapiens)
Nucleolar gtp-binding protein 2 (83 kDa, Protein from Homo sapiens)
60s ribosomal protein l4 (47 kDa, Protein from Homo sapiens)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l13a (23 kDa, Protein from Homo sapiens)
Zinc ion (65 Da, Ligand)
Coiled-coil domain-containing protein 86 (40 kDa, Protein from Homo sapiens)
60s ribosomal protein l21 (18 kDa, Protein from Homo sapiens)
5s rrna (38 kDa, RNA from Homo sapiens)
60s ribosomal protein l18a (20 kDa, Protein from Homo sapiens)
Protein llp homolog (15 kDa, Protein from Homo sapiens)
Guanosine-5'-diphosphate (443 Da, Ligand)
60s ribosomal protein l23 (14 kDa, Protein from Homo sapiens)
Eukaryotic translation initiation factor 6 (26 kDa, Protein from Homo sapiens)
60s ribosomal protein l14 (23 kDa, Protein from Homo sapiens)
Notchless protein homolog 1 (53 kDa, Protein from Homo sapiens)
Human nucleolar pre-60s ribosomal subunit (state h) (Complex from Homo sapiens)
Probable ribosome biogenesis protein rlp24 (19 kDa, Protein from Homo sapiens)
Ribosome production factor 2 homolog (35 kDa, Protein from Homo sapiens)
60s ribosomal protein l12 (17 kDa, Protein from Homo sapiens)
60s ribosomal protein l35a (12 kDa, Protein from Homo sapiens)
60s ribosomal protein l7 (29 kDa, Protein from Homo sapiens)
60s ribosomal protein l9 (21 kDa, Protein from Homo sapiens)
60s ribosomal protein l5 (34 kDa, Protein from Homo sapiens)
Guanosine-5'-triphosphate (523 Da, Ligand)
Guanine nucleotide-binding protein-like 3 (62 kDa, Protein from Homo sapiens)
60s ribosomal protein l3 (46 kDa, Protein from Homo sapiens)
60s ribosomal protein l28 (15 kDa, Protein from Homo sapiens)
60s ribosomal protein l6 (32 kDa, Protein from Homo sapiens)
Gtp-binding protein 4 (74 kDa, Protein from Homo sapiens)
Ribosome biogenesis regulatory protein homolog (41 kDa, Protein from Homo sapiens)
Ribosome biogenesis protein nsa2 homolog (30 kDa, Protein from Homo sapiens)
28s rrna (1 MDa, RNA from Homo sapiens)
Mrna turnover protein 4 homolog (27 kDa, Protein from Homo sapiens)
60s ribosomal protein l18 (21 kDa, Protein from Homo sapiens)
Potassium ion (39 Da, Ligand)

[Show more]

EMD-29265

Download Map 3D View Raw data

Human nuclear pre-60S ribosomal subunit (State I1) - Composite map

Release date: July 12, 2023
Resolution: 2.67 Å
EM Method: Single-particle
Fitted PDBs: 8fl2
Q-score: 0.544

Vanden Broeck A, Klinge S

Science (2023) 381 pp. eadh3892-eadh3892 [ DOI: doi:10.1126/science.adh3892 Pubmed: 37410842 ]

Sample:

Guanosine-5'-diphosphate (443 Da, Ligand)
Gtp-binding protein 4 (74 kDa, Protein from human)
60s ribosomal protein l26 (17 kDa, Protein from human)
28s rrna (1 MDa, RNA from human)
Pescadillo homolog (68 kDa, Protein from human)
60s ribosomal protein l38 (8 kDa, Protein from human)
5s rrna (38 kDa, RNA from human)
Human nuclear pre-60s ribosomal subunit (state i1) (Complex from Homo sapiens)
60s ribosomal protein l15 (24 kDa, Protein from human)
60s ribosomal protein l36 (12 kDa, Protein from human)
Ribosomal l1 domain-containing protein 1 (55 kDa, Protein from human)
60s ribosomal protein l27a (16 kDa, Protein from human)
Guanosine-5'-triphosphate (523 Da, Ligand)
60s ribosomal protein l18a (20 kDa, Protein from human)
Zinc finger protein 593 (15 kDa, Protein from human)
Protein llp homolog (15 kDa, Protein from human)
Mki67 fha domain-interacting nucleolar phosphoprotein (34 kDa, Protein from human)
60s ribosomal protein l23a (17 kDa, Protein from human)
60s ribosomal protein l8 (28 kDa, Protein from human)
60s ribosomal protein l7-like 1 (29 kDa, Protein from human)
60s ribosomal protein l35a (12 kDa, Protein from human)
Ribosomal biogenesis protein las1l (83 kDa, Protein from human)
60s ribosomal protein l37a (10 kDa, Protein from human)
60s ribosomal protein l37 (11 kDa, Protein from human)
Testis-expressed protein 10 (105 kDa, Protein from human)
Proline-, glutamic acid- and leucine-rich protein 1 (119 kDa, Protein from human)
60s ribosomal protein l30 (12 kDa, Protein from human)
Potassium ion (39 Da, Ligand)
60s ribosomal protein l18 (21 kDa, Protein from human)
60s ribosomal protein l13 (24 kDa, Protein from human)
60s ribosomal protein l34 (13 kDa, Protein from human)
Guanine nucleotide-binding protein-like 3 (62 kDa, Protein from human)
60s ribosomal protein l35 (14 kDa, Protein from human)
Eukaryotic translation initiation factor 6 (26 kDa, Protein from human)
Zinc ion (65 Da, Ligand)
Coiled-coil domain-containing protein 86 (40 kDa, Protein from human)
60s ribosomal protein l10a (24 kDa, Protein from human)
60s ribosomal protein l23 (14 kDa, Protein from human)
Nucleolar gtp-binding protein 2 (83 kDa, Protein from human)
Its2 rrna (376 kDa, RNA from human)
60s ribosomal protein l7 (29 kDa, Protein from human)
60s ribosomal protein l32 (15 kDa, Protein from human)
60s ribosomal protein l22 (14 kDa, Protein from human)
60s ribosomal protein l11 (20 kDa, Protein from human)
60s ribosomal protein l7a (30 kDa, Protein from human)
60s ribosomal protein l9 (21 kDa, Protein from human)
Wd repeat-containing protein 18 (47 kDa, Protein from human)
60s ribosomal protein l21 (18 kDa, Protein from human)
60s ribosomal protein l27 (15 kDa, Protein from human)
60s ribosomal protein l4 (47 kDa, Protein from human)
Probable ribosome biogenesis protein rlp24 (19 kDa, Protein from human)
60s ribosomal protein l5 (34 kDa, Protein from human)
60s ribosomal protein l6 (32 kDa, Protein from human)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l13a (23 kDa, Protein from human)
60s ribosomal protein l31 (14 kDa, Protein from human)
60s ribosomal protein l17 (21 kDa, Protein from human)
Ribosome biogenesis protein nsa2 homolog (30 kDa, Protein from human)
Ribosome biogenesis protein nop53 (54 kDa, Protein from human)
60s ribosomal protein l28 (15 kDa, Protein from human)
Notchless protein homolog 1 (53 kDa, Protein from human)
60s ribosomal protein l12 (17 kDa, Protein from human)
Mrna turnover protein 4 homolog (27 kDa, Protein from human)
5.8s rrna (50 kDa, RNA from human)
60s ribosomal protein l19 (23 kDa, Protein from human)
60s ribosomal protein l14 (23 kDa, Protein from human)
60s ribosomal protein l3 (46 kDa, Protein from human)
60s ribosomal protein l39 (6 kDa, Protein from human)
Protein sda1 homolog (80 kDa, Protein from human)

[Show more]

EMD-29266

Download Map 3D View Raw data

Human nuclear pre-60S ribosomal subunit (State I2) - Composite map

Release date: July 12, 2023
Resolution: 2.53 Å
EM Method: Single-particle
Fitted PDBs: 8fl3
Q-score: 0.563

Vanden Broeck A, Klinge S

Science (2023) 381 pp. eadh3892-eadh3892 [ DOI: doi:10.1126/science.adh3892 Pubmed: 37410842 ]

Sample:

Guanosine-5'-diphosphate (443 Da, Ligand)
Gtp-binding protein 4 (74 kDa, Protein from human)
60s ribosomal protein l26 (17 kDa, Protein from human)
Human nuclear pre-60s ribosomal subunit (state i2) (Complex from Homo sapiens)
28s rrna (1 MDa, RNA from human)
Pescadillo homolog (68 kDa, Protein from human)
60s ribosomal protein l38 (8 kDa, Protein from human)
5s rrna (38 kDa, RNA from human)
60s ribosomal protein l36 (12 kDa, Protein from human)
60s ribosomal protein l15 (24 kDa, Protein from human)
60s ribosomal protein l27a (16 kDa, Protein from human)
Guanosine-5'-triphosphate (523 Da, Ligand)
60s ribosomal protein l18a (20 kDa, Protein from human)
Zinc finger protein 593 (15 kDa, Protein from human)
Protein llp homolog (15 kDa, Protein from human)
Mki67 fha domain-interacting nucleolar phosphoprotein (34 kDa, Protein from human)
60s ribosomal protein l23a (17 kDa, Protein from human)
60s ribosomal protein l8 (28 kDa, Protein from human)
60s ribosomal protein l7-like 1 (29 kDa, Protein from human)
60s ribosomal protein l35a (12 kDa, Protein from human)
Ribosomal biogenesis protein las1l (83 kDa, Protein from human)
60s ribosomal protein l37a (10 kDa, Protein from human)
60s ribosomal protein l37 (11 kDa, Protein from human)
Testis-expressed protein 10 (105 kDa, Protein from human)
Proline-, glutamic acid- and leucine-rich protein 1 (119 kDa, Protein from human)
60s ribosomal protein l30 (12 kDa, Protein from human)
Potassium ion (39 Da, Ligand)
60s ribosomal protein l18 (21 kDa, Protein from human)
60s ribosomal protein l13 (24 kDa, Protein from human)
60s ribosomal protein l34 (13 kDa, Protein from human)
Guanine nucleotide-binding protein-like 3 (62 kDa, Protein from human)
60s ribosomal protein l35 (14 kDa, Protein from human)
Eukaryotic translation initiation factor 6 (26 kDa, Protein from human)
Zinc ion (65 Da, Ligand)
Coiled-coil domain-containing protein 86 (40 kDa, Protein from human)
60s ribosomal protein l10a (24 kDa, Protein from human)
60s ribosomal protein l23 (14 kDa, Protein from human)
Nucleolar gtp-binding protein 2 (83 kDa, Protein from human)
60s ribosomal protein l7 (29 kDa, Protein from human)
60s ribosomal protein l32 (15 kDa, Protein from human)
60s ribosomal protein l22 (14 kDa, Protein from human)
60s ribosomal protein l11 (20 kDa, Protein from human)
60s ribosomal protein l7a (30 kDa, Protein from human)
60s ribosomal protein l9 (21 kDa, Protein from human)
Wd repeat-containing protein 18 (47 kDa, Protein from human)
60s ribosomal protein l21 (18 kDa, Protein from human)
60s ribosomal protein l27 (15 kDa, Protein from human)
60s ribosomal protein l4 (47 kDa, Protein from human)
Probable ribosome biogenesis protein rlp24 (19 kDa, Protein from human)
60s ribosomal protein l5 (34 kDa, Protein from human)
60s ribosomal protein l6 (32 kDa, Protein from human)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l13a (23 kDa, Protein from human)
60s ribosomal protein l31 (14 kDa, Protein from human)
60s ribosomal protein l17 (21 kDa, Protein from human)
Ribosome biogenesis protein nsa2 homolog (30 kDa, Protein from human)
Ribosome biogenesis protein nop53 (54 kDa, Protein from human)
60s ribosomal protein l28 (15 kDa, Protein from human)
Notchless protein homolog 1 (53 kDa, Protein from human)
60s ribosomal protein l12 (17 kDa, Protein from human)
Mrna turnover protein 4 homolog (27 kDa, Protein from human)
5.8s rrna (50 kDa, RNA from human)
60s ribosomal protein l19 (23 kDa, Protein from human)
60s ribosomal protein l14 (23 kDa, Protein from human)
60s ribosomal protein l3 (46 kDa, Protein from human)
60s ribosomal protein l39 (6 kDa, Protein from human)
Protein sda1 homolog (80 kDa, Protein from human)

[Show more]

EMD-29267

Download Map 3D View Raw data

Human nuclear pre-60S ribosomal subunit (State I3) - Composite map

Release date: July 12, 2023
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 8fl4
Q-score: 0.494

Vanden Broeck A, Klinge S

Science (2023) 381 pp. eadh3892-eadh3892 [ DOI: doi:10.1126/science.adh3892 Pubmed: 37410842 ]

Sample:

Guanosine-5'-diphosphate (443 Da, Ligand)
Gtp-binding protein 4 (74 kDa, Protein from human)
60s ribosomal protein l26 (17 kDa, Protein from human)
28s rrna (1 MDa, RNA from human)
Pescadillo homolog (68 kDa, Protein from human)
60s ribosomal protein l38 (8 kDa, Protein from human)
5s rrna (38 kDa, RNA from human)
60s ribosomal protein l36 (12 kDa, Protein from human)
60s ribosomal protein l15 (24 kDa, Protein from human)
60s ribosomal protein l27a (16 kDa, Protein from human)
Guanosine-5'-triphosphate (523 Da, Ligand)
Human nuclear pre-60s ribosomal subunit (state i3) (Complex from Homo sapiens)
60s ribosomal protein l18a (20 kDa, Protein from human)
Zinc finger protein 593 (15 kDa, Protein from human)
Protein llp homolog (15 kDa, Protein from human)
60s ribosomal protein l23a (17 kDa, Protein from human)
60s ribosomal protein l8 (28 kDa, Protein from human)
60s ribosomal protein l7-like 1 (29 kDa, Protein from human)
60s ribosomal protein l35a (12 kDa, Protein from human)
Ribosomal biogenesis protein las1l (83 kDa, Protein from human)
60s ribosomal protein l37a (10 kDa, Protein from human)
60s ribosomal protein l37 (11 kDa, Protein from human)
Testis-expressed protein 10 (105 kDa, Protein from human)
Proline-, glutamic acid- and leucine-rich protein 1 (119 kDa, Protein from human)
60s ribosomal protein l30 (12 kDa, Protein from human)
Potassium ion (39 Da, Ligand)
60s ribosomal protein l18 (21 kDa, Protein from human)
60s ribosomal protein l13 (24 kDa, Protein from human)
60s ribosomal protein l34 (13 kDa, Protein from human)
Guanine nucleotide-binding protein-like 3 (62 kDa, Protein from human)
60s ribosomal protein l35 (14 kDa, Protein from human)
Eukaryotic translation initiation factor 6 (26 kDa, Protein from human)
Zinc ion (65 Da, Ligand)
Coiled-coil domain-containing protein 86 (40 kDa, Protein from human)
60s ribosomal protein l10a (24 kDa, Protein from human)
60s ribosomal protein l23 (14 kDa, Protein from human)
Nucleolar gtp-binding protein 2 (83 kDa, Protein from human)
60s ribosomal protein l7 (29 kDa, Protein from human)
60s ribosomal protein l32 (15 kDa, Protein from human)
60s ribosomal protein l22 (14 kDa, Protein from human)
60s ribosomal protein l11 (20 kDa, Protein from human)
60s ribosomal protein l7a (30 kDa, Protein from human)
60s ribosomal protein l9 (21 kDa, Protein from human)
Wd repeat-containing protein 18 (47 kDa, Protein from human)
60s ribosomal protein l21 (18 kDa, Protein from human)
60s ribosomal protein l27 (15 kDa, Protein from human)
60s ribosomal protein l4 (47 kDa, Protein from human)
Probable ribosome biogenesis protein rlp24 (19 kDa, Protein from human)
60s ribosomal protein l5 (34 kDa, Protein from human)
60s ribosomal protein l6 (32 kDa, Protein from human)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l13a (23 kDa, Protein from human)
60s ribosomal protein l31 (14 kDa, Protein from human)
60s ribosomal protein l17 (21 kDa, Protein from human)
Ribosome biogenesis protein nsa2 homolog (30 kDa, Protein from human)
Ribosome biogenesis protein nop53 (54 kDa, Protein from human)
60s ribosomal protein l28 (15 kDa, Protein from human)
Notchless protein homolog 1 (53 kDa, Protein from human)
60s ribosomal protein l12 (17 kDa, Protein from human)
Mrna turnover protein 4 homolog (27 kDa, Protein from human)
5.8s rrna (50 kDa, RNA from human)
60s ribosomal protein l19 (23 kDa, Protein from human)
60s ribosomal protein l14 (23 kDa, Protein from human)
60s ribosomal protein l3 (46 kDa, Protein from human)
60s ribosomal protein l39 (6 kDa, Protein from human)
Protein sda1 homolog (80 kDa, Protein from human)

[Show more]

Sort by: Download

Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [4]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

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Field: