EMDB < Search results

EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

Edit your search query here and hit Return to execute it:

sample_name:"HEME O" AND xref_links:"pdbekb" AND sample_type:"complex" AND author_name:"Kamiya K" AND author_name:"Akeda Y" AND sample_type:"protein" AND author_name:"Harada R" AND author_name:"Ishii Y" AND author_orcid:"0000-0001-6908-9953"

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EMDB [2]

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EMD-33293

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Cryo-EM structure of Cytochrome bo3 from Escherichia coli, apo structure with DMSO

Release date: Dec. 21, 2022
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 7xmc
Q-score: 0.526

Nishida Y, Yanagisawa S, Morita R, Shigematsu H, Shinzawa-Itoh K, Yuki H, Ogasawara S, Shimuta K, Iwamoto T, Nakabayashi C, Matsumura W, Kato H, Gopalasingam C, Nagao T, Qaqorh T, Takahashi Y, Yamazaki S, Kamiya K, Harada R, Mizuno N, Takahashi H, Akeda Y, Ohnishi M, Ishii Y, Kumasaka T, Murata T, Muramoto K, Tosha T, Shiro Y, Honma T, Shigeta Y, Kubo M, Takashima S, Shintani Y

Nat Commun (2022) 13 pp. 7591-7591 [ Pubmed: 36481732 DOI: doi:10.1038/s41467-022-34771-y ]

Sample:

Cytochrome bo3 ubiquinol oxidase (144 kDa, Complex from Escherichia coli)
Copper (ii) ion (63 Da, Ligand)
Cytochrome bo(3) ubiquinol oxidase subunit 3 (22 kDa, Protein from Escherichia coli)
Protoporphyrin ix containing fe (616 Da, Ligand)
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
Cytochrome bo(3) ubiquinol oxidase subunit 4 (12 kDa, Protein from Escherichia coli)
Unknown atom or ion (744 Da, Ligand)
Heme o (838 Da, Ligand)
Ubiquinol oxidase subunit 2 (36 kDa, Protein from Escherichia coli)
Cytochrome bo(3) ubiquinol oxidase subunit 1 (74 kDa, Protein from Escherichia coli)

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EMD-33294

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Cryo-EM structure of Cytochrome bo3 from Escherichia coli, the structure complexed with an allosteric inhibitor N4

Release date: Dec. 21, 2022
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 7xmd
Q-score: 0.535

Nishida Y, Yanagisawa S, Morita R, Shigematsu H, Shinzawa-Itoh K, Yuki H, Ogasawara S, Shimuta K, Iwamoto T, Nakabayashi C, Matsumura W, Kato H, Gopalasingam C, Nagao T, Qaqorh T, Takahashi Y, Yamazaki S, Kamiya K, Harada R, Mizuno N, Takahashi H, Akeda Y, Ohnishi M, Ishii Y, Kumasaka T, Murata T, Muramoto K, Tosha T, Shiro Y, Honma T, Shigeta Y, Kubo M, Takashima S, Shintani Y

Nat Commun (2022) 13 pp. 7591-7591 [ DOI: doi:10.1038/s41467-022-34771-y Pubmed: 36481732 ]

Sample:

Cytochrome bo(3) ubiquinol oxidase subunit 1 (74 kDa, Protein from Escherichia coli)
Protoporphyrin ix containing fe (616 Da, Ligand)
Cytochrome bo(3) ubiquinol oxidase subunit 3 (22 kDa, Protein from Escherichia coli)
1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
Cytochrome bo(3) ubiquinol oxidase subunit 4 (12 kDa, Protein from Escherichia coli)
Methyl 3-oxidanyl-5-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]-1-benzothiophene-2-carboxylate (253 Da, Ligand)
Cytochrome bo3 ubiquinol oxidase (144 kDa, Complex from Escherichia coli)
Ubiquinol oxidase subunit 2 (36 kDa, Protein from Escherichia coli)
Heme o (838 Da, Ligand)
Copper (ii) ion (63 Da, Ligand)
Unknown atom or ion (Ligand)

[Show more]

Sort by: Download

Showing 1 - 2 of 2. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [2]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: