Human retinal variant phosphomimetic IMPDH1(595)-S477D free octamer bound by GTP, ATP, IMP, and NAD+
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8u7m
Q-score: 0.456
Calise SJ, O'Neill AG, Burrell AL, Dickinson MS, Molfino J, Clarke C, Quispe J, Sokolov D, Buey RM, Kollman JM
J Cell Biol (2024) 223 [ DOI: doi:10.1083/jcb.202310139 Pubmed: 38323936 ]
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Impdh1(595)-s477d octamer bound by gtp, atp, imp, and nad+ (508 kDa, Complex from Homo sapiens)
- Inosine-5'-monophosphate dehydrogenase 1 (63 kDa, Protein from Homo sapiens)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Inosinic acid (348 Da, Ligand)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8u7q
Q-score: 0.528
Calise SJ, O'Neill AG, Burrell AL, Dickinson MS, Molfino J, Clarke C, Quispe J, Sokolov D, Buey RM, Kollman JM
J Cell Biol (2024) 223 [ Pubmed: 38323936 DOI: doi:10.1083/jcb.202310139 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Inosine-5'-monophosphate dehydrogenase 1 (58 kDa, Protein from Homo sapiens)
- Inosinic acid (348 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Impdh1(546)-s477d filament bound by gtp, atp, imp, and nad+ (468 kDa, Complex from Homo sapiens)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8u7v
Q-score: 0.514
Calise SJ, O'Neill AG, Burrell AL, Dickinson MS, Molfino J, Clarke C, Quispe J, Sokolov D, Buey RM, Kollman JM
J Cell Biol (2024) 223 [ DOI: doi:10.1083/jcb.202310139 Pubmed: 38323936 ]
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Inosine-5'-monophosphate dehydrogenase 1 (58 kDa, Protein from Homo sapiens)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Inosinic acid (348 Da, Ligand)
- Impdh1(546)-s477d filament bound by gtp, atp, imp, and nad+ (468 kDa, Complex from Homo sapiens)
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 8u8o
Q-score: 0.585
Calise SJ, O'Neill AG, Burrell AL, Dickinson MS, Molfino J, Clarke C, Quispe J, Sokolov D, Buey RM, Kollman JM
J Cell Biol (2024) 223 [ DOI: doi:10.1083/jcb.202310139 Pubmed: 38323936 ]
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Inosine-5'-monophosphate dehydrogenase 1 (58 kDa, Protein from Homo sapiens)
- Inosinic acid (348 Da, Ligand)
- Impdh1(546)-s477d filament bound by atp, imp, and nad+ (468 kDa, Complex from Homo sapiens)
Resolution: 2.1 Å
EM Method: Single-particle
Fitted PDBs: 8u8y
Q-score: 0.744
Calise SJ, O'Neill AG, Burrell AL, Dickinson MS, Molfino J, Clarke C, Quispe J, Sokolov D, Buey RM, Kollman JM
J Cell Biol (2024) 223 [ DOI: doi:10.1083/jcb.202310139 Pubmed: 38323936 ]
- Inosine-5'-monophosphate dehydrogenase 1 (58 kDa, Protein from Homo sapiens)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Impdh1(546)-s477d filament bound by atp, imp, and nad+ (468 kDa, Complex from Homo sapiens)
- Inosinic acid (348 Da, Ligand)
Resolution: 2.0 Å
EM Method: Single-particle
Fitted PDBs: 8foz
Q-score: 0.763
O'Neill AG, Burrell AL, Zech M, Elpeleg O, Harel T, Edvardson S, Mor-Shaked H, Rippert AL, Nomakuchi T, Izumi K, Kollman JM
J Biol Chem (2023) 299 pp. 105012-105012 [ Pubmed: 37414152 DOI: doi:10.1016/j.jbc.2023.105012 ]
- Filament of inosine-5'-monophosphate dehydrogenase 2 - l245p mutant, bound to atp, imp, and nad+ (Complex from Homo sapiens)
- Inosine-5'-monophosphate dehydrogenase 2 (56 kDa, Protein from Homo sapiens)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Inosinic acid (348 Da, Ligand)
Resolution: 2.1 Å
EM Method: Single-particle
Fitted PDBs: 8fuz
Q-score: 0.735
O'Neill AG, Burrell AL, Zech M, Elpeleg O, Harel T, Edvardson S, Mor-Shaked H, Rippert AL, Nomakuchi T, Izumi K, Kollman JM
J Biol Chem (2023) 299 pp. 105012-105012 [ Pubmed: 37414152 DOI: doi:10.1016/j.jbc.2023.105012 ]
- Filament of inosine-5'-monophosphate dehydrogenase 2 - l245p mutant, bound to gtp, atp, imp, and nad+ (Complex from Homo sapiens)
- Inosine-5'-monophosphate dehydrogenase 2 (56 kDa, Protein from Homo sapiens)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Inosinic acid (348 Da, Ligand)
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8g8f
Q-score: 0.573
O'Neill AG, Burrell AL, Zech M, Elpeleg O, Harel T, Edvardson S, Mor-Shaked H, Rippert AL, Nomakuchi T, Izumi K, Kollman JM
J Biol Chem (2023) 299 pp. 105012-105012 [ Pubmed: 37414152 DOI: doi:10.1016/j.jbc.2023.105012 ]
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Inosine-5'-monophosphate dehydrogenase 2 (56 kDa, Protein from Homo sapiens)
- Inosinic acid (348 Da, Ligand)
- Filament of inosine-5'-monophosphate dehydrogenase 2 - l245p mutant, bound to atp, imp, and nad+ (Complex from Homo sapiens)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8g9b
Q-score: 0.529
O'Neill AG, Burrell AL, Zech M, Elpeleg O, Harel T, Edvardson S, Mor-Shaked H, Rippert AL, Nomakuchi T, Izumi K, Kollman JM
J Biol Chem (2023) 299 pp. 105012-105012 [ DOI: doi:10.1016/j.jbc.2023.105012 Pubmed: 37414152 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Inosinic acid (348 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Filament of inosine-5'-monophosphate dehydrogenase 2 - l245p mutant, bound to gtp, atp, imp, and nad+ (Complex from Homo sapiens)
- Inosine-5'-monophosphate dehydrogenase 2 (56 kDa, Protein from Homo sapiens)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
O'Neill AG, Burrell AL, Zech M, Elpeleg O, Harel T, Edvardson S, Mor-Shaked H, Rippert AL, Nomakuchi T, Izumi K, Kollman JM
J Biol Chem (2023) 299 pp. 105012-105012 [ Pubmed: 37414152 DOI: doi:10.1016/j.jbc.2023.105012 ]