Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7eu3
Q-score: 0.402
Shen L, Tang K, Wang W, Wang C, Wu H, Mao Z, An S, Chang S, Kuang T, Shen JR, Han G, Zhang X
Nature (2022) 601 pp. 649-654 [ DOI: doi:10.1038/s41586-021-04277-6 Pubmed: 34879391 ]
- Photosynthetic ndh subunit of subcomplex b4 (9 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit k, chloroplastic (27 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Beta-carotene (536 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit i, chloroplastic (19 kDa, Protein from Hordeum vulgare)
- Nad(p)h-quinone oxidoreductase subunit 3, chloroplastic (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l3 (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Unidentified stromal protein (5 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit n (25 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 4l, chloroplastic (11 kDa, Protein from Hordeum vulgare)
- Nad(p)h-quinone oxidoreductase subunit 1, chloroplastic (38 kDa, Protein from Hordeum vulgare)
- Nad(p)h-quinone oxidoreductase subunit j (18 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b3 (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b5 (18 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b2 (38 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l1 (17 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Iron/sulfur cluster (351 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit f (87 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l4 (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit l (22 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b1 (51 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit m (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 6, chloroplastic (19 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 2, chloroplastic (53 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase chain 4, chloroplastic (56 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chloroplast ndh complex of barley (Complex from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l5 (25 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit h, chloroplastic (44 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l2 (23 kDa, Protein from Hordeum vulgare subsp. spontaneum)
Barley photosystem I-LHCI-Lhca5 supercomplex
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7ew6
Q-score: 0.466
Shen L, Tang K, Wang W, Wang C, Wu H, Mao Z, An S, Chang S, Kuang T, Shen JR, Han G, Zhang X
Nature (2022) 601 pp. 649-654 [ DOI: doi:10.1038/s41586-021-04277-6 Pubmed: 34879391 ]
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Psi-lhci-lhca5 supercomplex of barley (Complex from Hordeum vulgare subsp. spontaneum)
- Beta-carotene (536 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit vi, chloroplastic (14 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit iv, chloroplastic (15 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit ii, chloroplastic (21 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit xi, chloroplastic (22 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a-b binding protein lhca5 (27 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (29 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca1 (26 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i iron-sulfur center (8 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
PSI-NDH supercomplex of Barley
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7f9o
Q-score: 0.153
Shen L, Tang K, Wang W, Wang C, Wu H, Mao Z, An S, Chang S, Kuang T, Shen JR, Han G, Zhang X
Nature (2022) 601 pp. 649-654 [ DOI: doi:10.1038/s41586-021-04277-6 Pubmed: 34879391 ]
- Photosynthetic ndh subunit of subcomplex b4 (9 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit n, chloroplastic (25 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit k, chloroplastic (27 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Beta-carotene (536 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 3, chloroplastic (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Psi-ndh supercomplex of barley (Complex from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Unidentified stromal protein (5 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca4 (21 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit l, chloroplastic (22 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit vi, chloroplastic (14 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit iv, chloroplastic (15 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit m, chloroplastic (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nadh-plastoquinone oxidoreductase subunit 5 (87 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b3 (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b5 (18 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b2 (38 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l1 (17 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit ii, chloroplastic (21 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit xi, chloroplastic (22 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l4 (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca5 (27 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll b (907 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosynthetic ndh subunit of subcomplex b1 (51 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l2 (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein, chloroplastic (29 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 2, chloroplastic (53 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 4l, chloroplastic (11 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 6, chloroplastic (19 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 1, chloroplastic (38 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase chain 4, chloroplastic (56 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit j, chloroplastic (18 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca1 (26 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l5 (25 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit i, chloroplastic (19 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i iron-sulfur center (8 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit h, chloroplastic (44 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l2 (23 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a isomer (893 Da, Ligand)
Photosystem I from a chlorophyll d-containing cyanobacterium Acaryochloris marina
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7dwq
Q-score: 0.469
Xu C, Zhu Q, Chen JH, Shen L, Yi X, Huang Z, Wang W, Chen M, Kuang T, Shen JR, Zhang X, Han G
J Integr Plant Biol (2021) 63 pp. 1740-1752 [ DOI: doi:10.1111/jipb.13113 Pubmed: 34002536 ]
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem i protein psaf (17 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem i iron-sulfur center (8 kDa, Protein from Acaryochloris marinan MBIC11017)
- Photosystem i p740 chlorophyll a apoprotein a1 (83 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem i from a chlorophyll d-containing cyanobacterium acaryochloris marina (Complex from Acaryochloris marina MBIC11017)
- Chlorophyll d isomer (895 Da, Ligand)
- (6'r,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene (536 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit iv (9 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem i p740 chlorophyll a apoprotein a2 (82 kDa, Protein from Acaryochloris marina MBIC11017)
- Chlorophyll d (895 Da, Ligand)
- Photosystem i protein psad (15 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem i protein psal (15 kDa, Protein from Acaryochloris marina MBIC 11017)
- Pheophytin a (871 Da, Ligand)
- Photosystem i protein psa27 (3 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem i reaction center subunit ix (5 kDa, Protein from Acaryochloris marina MBIC 11017)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Photosystem I-LHCI-LHCII of Chlamydomonas reinhardtii
Resolution: 3.42 Å
EM Method: Single-particle
Fitted PDBs: 7d0j
Q-score: 0.407
Huang Z, Shen L, Wang W, Mao Z, Yi X, Kuang T, Shen JR, Zhang X, Han G
Nat Commun (2021) 12 pp. 1100-1100 [ Pubmed: 33597543 DOI: doi:10.1038/s41467-021-21362-6 ]
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Chlamydomonas smithii)
- Photosystem i (Complex from Chlamydomonas reinhardtii)
- Phylloquinone (450 Da, Ligand)
- Photosystem i subunit o (10 kDa, Protein from Chlamydomonas smithii)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Chlamydomonas smithii)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Chlamydomonas smithii)
- Psi subunit v (16 kDa, Protein from Chlamydomonas smithii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Lhci (Complex from Chlamydomonas reinhardtii)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit ii, chloroplastic (16 kDa, Protein from Chlamydomonas smithii)
- Photosystem i-lhci-lhcii supercomplex of chlamydomonas reinhardtii (Complex from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (21 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas smithii)
- Photosystem i reaction center subunit f, photosystem i reaction center subunit iii, chloroplastic (17 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (19 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas smithii)
- Lhcii (Complex)
- Photosystem i reaction center subunit vi, chloroplastic (11 kDa, Protein from Chlamydomonas smithii)
- Photosystem i reaction center subunit iv, chloroplastic (7 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (20 kDa, Protein from Chlamydomonas smithii)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Chlamydomonas smithii)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (24 kDa, Protein from Chlamydomonas smithii)
- Photosystem i iron-sulfur center (8 kDa, Protein from Chlamydomonas smithii)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (81 kDa, Protein from Chlamydomonas smithii)
- Photosystem i reaction center subunit psak, chloroplastic (8 kDa, Protein from Chlamydomonas smithii)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Chlamydomonas smithii)
- Photosystem i reaction center subunit v, chloroplastic (9 kDa, Protein from Chlamydomonas smithii)
- Iron/sulfur cluster (351 Da, Ligand)
PSI-LHCI Supercomplex from Physcometrella patens
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 6l35
Q-score: 0.545
Yan Q, Zhao L, Wang W, Pi X, Han G, Wang J, Cheng L, He YK, Kuang T, Qin X, Sui SF, Shen JR
Cell Discov (2021) 7 pp. 10-10 [ DOI: doi:10.1038/s41421-021-00242-9 Pubmed: 33589616 ]
- Phylloquinone (450 Da, Ligand)
- Psi subunit v (16 kDa, Protein from Moss)
- Predicted protein psad (15 kDa, Protein from Moss)
- Psah photosystem i reaction center subunit (9 kDa, Protein from Moss)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Psak (7 kDa, Protein from Moss)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Moss)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Moss)
- Chlorophyll a-b binding protein, chloroplastic (20 kDa, Protein from Moss)
- Beta-carotene (536 Da, Ligand)
- Psi-lhci (Complex from Physcomitrella patens)
- Psi-f (17 kDa, Protein from Moss)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Moss)
- Iron/sulfur cluster (351 Da, Ligand)
- Predicted protein psag (10 kDa, Protein from Moss)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Moss)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Moss)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Psae (6 kDa, Protein from Moss)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Moss)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Moss)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Moss)
- Photosystem i iron-sulfur center (8 kDa, Protein from Moss)