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sample_name:"IRON/SULFUR CLUSTER" AND resolution:[4 TO 5} AND author_name:"Ryu J" AND xref_links:"go"
Activity optimized supercomplex state2
Release date: May 18, 2022
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 7dgr
Q-score: 0.178
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 7dgr
Q-score: 0.178
Jeon TJ, Lee SG, Yoo SH, Kim M, Song D, Ryu J, Park H, Kim DS, Hyun J, Kim HM, Ryu SE
Antioxid Redox Signal (2022) [ Pubmed: 34913730 DOI: doi:10.1089/ars.2021.0114 ]
Sample:
- Cytochrome c oxidase subunit 5b, mitochondrial (13 kDa, Protein from Bovine)
- Nadh-ubiquinone oxidoreductase chain 3 (13 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial (8 kDa, Protein from Bovine)
- Nadh-ubiquinone oxidoreductase chain 4l (10 kDa, Protein from Bovine)
- Cytochrome b-c1 complex subunit 8 (9 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 (13 kDa, Protein from Bovine)
- Cytochrome b-c1 complex subunit rieske, mitochondrial (7 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial (39 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial (16 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial (10 kDa, Protein from Bovine)
- Heme-a (852 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 (17 kDa, Protein from Bovine)
- Cytochrome c oxidase subunit 6c (8 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 5 (12 kDa, Protein from Bovine)
- Cytochrome b (42 kDa, Protein from Bovine)
- Nadh-ubiquinone oxidoreductase 75 kda subunit, mitochondrial (77 kDa, Protein from Bovine)
- Cytochrome c oxidase subunit 3 (29 kDa, Protein from Bovine)
- Heme c (618 Da, Ligand)
- Cytochrome b-c1 complex subunit 7 (13 kDa, Protein from Bovine)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 (21 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 (11 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6 (15 kDa, Protein from Bovine)
- Cytochrome c oxidase subunit 1 (57 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 (14 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial (26 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial (20 kDa, Protein from Bovine)
- Cytochrome b-c1 complex subunit 10 (6 kDa, Protein from Bovine)
- Cytochrome c oxidase subunit 6b1 (10 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 (12 kDa, Protein from Bovine)
- Cytochrome c1, heme protein, mitochondrial (27 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial (20 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 (16 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 (10 kDa, Protein from Bovine)
- Cardiolipin (1 kDa, Ligand)
- Cytochrome c oxidase subunit 7a1, mitochondrial (9 kDa, Protein from Bovine)
- Cytochrome b-c1 complex subunit 6, mitochondrial (10 kDa, Protein from Bovine)
- Acyl carrier protein, mitochondrial (10 kDa, Protein from Bovine)
- Cytochrome c oxidase subunit 7b, mitochondrial (9 kDa, Protein from Bovine)
- Cytochrome c oxidase subunit 8b, mitochondrial (7 kDa, Protein from Bovine)
- Nadh-ubiquinone oxidoreductase chain 5 (68 kDa, Protein from Bovine)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 subunit c2 (14 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 (8 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial (8 kDa, Protein from Bovine)
- Iron/sulfur cluster (351 Da, Ligand)
- Cytochrome b-c1 complex subunit rieske, mitochondrial (21 kDa, Protein from Bovine)
- Nadh-ubiquinone oxidoreductase chain 4 (52 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 (15 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 (6 kDa, Protein from Bovine)
- Zinc ion (65 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial (23 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 (9 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 (14 kDa, Protein from Bovine)
- Nadh-ubiquinone oxidoreductase chain 6 (19 kDa, Protein from Bovine)
- Cytochrome b-c1 complex subunit 1, mitochondrial (52 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial (14 kDa, Protein from Bovine)
- Cytochrome c oxidase subunit 7c, mitochondrial (7 kDa, Protein from Bovine)
- Flavin mononucleotide (456 Da, Ligand)
- Copper (ii) ion (63 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 (14 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 (19 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial (18 kDa, Protein from Bovine)
- Magnesium ion (24 Da, Ligand)
- Cytochrome b-c1 complex subunit 9 (7 kDa, Protein from Bovine)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial (49 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 subunit c1, mitochondrial (5 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (48 kDa, Protein from Bovine)
- Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (19 kDa, Protein from Bovine)
- Cytochrome c oxidase subunit 6a2, mitochondrial (10 kDa, Protein from Bovine)
- Cytochrome c oxidase subunit 2 (26 kDa, Protein from Bovine)
- Nadh-ubiquinone oxidoreductase (Complex from Bos taurus)
- Nadp nicotinamide-adenine-dinucleotide phosphate (743 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial (36 kDa, Protein from Bovine)
- Nadh-ubiquinone oxidoreductase chain 1 (35 kDa, Protein from Bovine)
- Cytochrome c oxidase subunit 5a, mitochondrial (16 kDa, Protein from Bovine)
- Nadh-ubiquinone oxidoreductase chain 2 (39 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 (21 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (15 kDa, Protein from Bovine)
- Cytochrome b-c1 complex subunit 2, mitochondrial (48 kDa, Protein from Bovine)
Activity optimized complex I (open form)
Release date: May 18, 2022
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7dh0
Q-score: 0.311
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7dh0
Q-score: 0.311
Jeon TJ, Lee SG, Yoo SH, Kim M, Song D, Ryu J, Park H, Kim DS, Hyun J, Kim HM, Ryu SE
Antioxid Redox Signal (2022) [ Pubmed: 34913730 DOI: doi:10.1089/ars.2021.0114 ]
Sample:
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 (21 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 (8 kDa, Protein from Bovine)
- Acyl carrier protein, mitochondrial (10 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 (6 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6 (15 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial (16 kDa, Protein from Bovine)
- Cardiolipin (1 kDa, Ligand)
- Nadh-ubiquinone oxidoreductase chain 3 (13 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (48 kDa, Protein from Bovine)
- Nadh-ubiquinone oxidoreductase chain 2 (39 kDa, Protein from Bovine)
- Supercomplex of electron transport chain complexes (Complex from Bos taurus)
- Nadh-ubiquinone oxidoreductase chain 1 (35 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial (20 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 (15 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 (14 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial (8 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 (21 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 (19 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 (17 kDa, Protein from Bovine)
- Nadp nicotinamide-adenine-dinucleotide phosphate (743 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial (20 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 (16 kDa, Protein from Bovine)
- Zinc ion (65 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 (11 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 (9 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 (16 kDa, Protein from Bovine)
- Nadh-ubiquinone oxidoreductase chain 4 (52 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial (39 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial (49 kDa, Protein from Bovine)
- Nadh-ubiquinone oxidoreductase 75 kda subunit, mitochondrial (77 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial (23 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial (36 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial (10 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial (8 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial (26 kDa, Protein from Bovine)
- Nadh-ubiquinone oxidoreductase chain 6 (19 kDa, Protein from Bovine)
- Nadh-ubiquinone oxidoreductase chain 4l (10 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (15 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 (13 kDa, Protein from Bovine)
- Iron/sulfur cluster (351 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 5 (12 kDa, Protein from Bovine)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 subunit c2 (14 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 (14 kDa, Protein from Bovine)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 (12 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial (14 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 subunit c1, mitochondrial (5 kDa, Protein from Bovine)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial (18 kDa, Protein from Bovine)
- Flavin mononucleotide (456 Da, Ligand)
- Nadh-ubiquinone oxidoreductase chain 5 (68 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 (10 kDa, Protein from Bovine)