EMDB < Search results

EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"IRON/SULFUR CLUSTER" AND resolution:[4 TO 5} AND citation_journal_name:"J AM CHEM SOC"

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EMD-13818

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Electron bifurcating hydrogenase - HydABC from A. woodii

Release date: Feb. 22, 2023
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 7q4v
Q-score: 0.211

Katsyv A, Kumar A, Saura P, Poverlein MC, Freibert SA, T Stripp S, Jain S, Gamiz-Hernandez AP, Kaila VRI, Muller V, Schuller JM

J Am Chem Soc (2023) 145 pp. 5696-5709 [ Pubmed: 36811855 DOI: doi:10.1021/jacs.2c11683 ]

Sample:

Iron/sulfur cluster (351 Da, Ligand)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
Iron hydrogenase hydc (16 kDa, Protein from Acetobacterium woodii DSM 1030)
Homodimer complex of hydabc trimer (300 MDa, Complex from Acetobacterium woodii DSM 1030)
Iron hydrogenase hyda1 (63 kDa, Protein from Acetobacterium woodii DSM 1030)
Iron hydrogenase hydb (64 kDa, Protein from Acetobacterium woodii DSM 1030)
Flavin mononucleotide (456 Da, Ligand)
Zinc ion (65 Da, Ligand)

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EMD-12697

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Structure of a Minimal Photosystem I

Release date: Sept. 1, 2021
Resolution: 4.31 Å
EM Method: Single-particle
Fitted PDBs: 7o1v
Q-score: 0.4

Akhtar P, Caspy I, Nowakowski PJ, Malavath T, Nelson N, Tan HS, Lambrev PH

J Am Chem Soc (2021) 143 pp. 14601-14612 [ Pubmed: 34472838 DOI: doi:10.1021/jacs.1c05010 ]

Sample:

Phylloquinone (450 Da, Ligand)
Minimal photosystem i (Complex from Synechocystis sp. (strain PCC 6803 / Kazusa))
1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
Photosystem i reaction center subunit xii (3 kDa, Protein from Synechocystis sp. (strain PCC 6803 / Kazusa))
Photosystem i p700 chlorophyll a apoprotein a1 (81 kDa, Protein from Synechocystis sp. (strain PCC 6803 / Kazusa))
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Photosystem i reaction center subunit ii (15 kDa, Protein from Synechocystis sp. (strain PCC 6803 / Kazusa))
Iron/sulfur cluster (351 Da, Ligand)
Chlorophyll a (893 Da, Ligand)
Photosystem i reaction center subunit iv (7 kDa, Protein from Synechocystis sp. (strain PCC 6803 / Kazusa))
Photosystem i iron-sulfur center (8 kDa, Protein from Synechocystis sp. (strain PCC 6803 / Kazusa))
Beta,beta-caroten-4-one (550 Da, Ligand)
Photosystem i p700 chlorophyll a apoprotein a2 (81 kDa, Protein from Synechocystis sp. (strain PCC 6803 / Kazusa))
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Beta-carotene (536 Da, Ligand)
Photosystem i reaction center subunit psak 2 (8 kDa, Protein from Synechocystis sp. (strain PCC 6803 / Kazusa))

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Display: Statistics

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EMDB [2]

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