Electron Microscopy Data Bank

EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"IRON/SULFUR CLUSTER" AND resolution:[4 TO 5} AND sample_type:"virus" AND xref_links:"pfam"

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EMD-10443

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Virion of native gene transfer agent (GTA) particle

Release date: July 22, 2020
Resolution: 4.54 Å
EM Method: Single-particle
Fitted PDBs: 6tba
Q-score: 0.472

Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P

Nat Commun (2020) 11 pp. 3034-3034 [ Pubmed: 32541663 DOI: doi:10.1038/s41467-020-16669-9 ]

Sample:

Iron/sulfur cluster (351 Da, Ligand)
Baseplate (Complex from Rhodobacter capsulatus SB 1003)
Phage major capsid protein, hk97 family (40 kDa, Protein from Rhodobacter capsulatus SB 1003)
Uncharacterized protein (20 kDa, Protein from Rhodobacter capsulatus SB 1003)
Phage major tail protein, tp901-1 family (14 kDa, Protein from Rhodobacter capsulatus SB 1003)
Portal protein rcc01684 (42 kDa, Protein from Rhodobacter capsulatus SB 1003)
Uncharacterized protein (32 kDa, Protein from Rhodobacter capsulatus SB 1003)
Connector (Complex from Rhodobacter capsulatus SB 1003)
Uncharacterized protein (13 kDa, Protein from Rhodobacter capsulatus SB 1003)
Uncharacterized protein (12 kDa, Protein from Rhodobacter capsulatus SB 1003)
Uncharacterized protein (22 kDa, Protein from Rhodobacter capsulatus SB 1003)
Head spike (Complex from Rhodobacter capsulatus SB 1003)
Uncharacterized protein (138 kDa, Protein from Rhodobacter capsulatus SB 1003)
Uncharacterized protein (31 kDa, Protein from Rhodobacter capsulatus SB 1003)
Uncharacterized protein (9 kDa, Protein from Rhodobacter capsulatus SB 1003)
Capsid (Complex from Rhodobacter capsulatus SB 1003)
Rhodobacter capsulatus sb 1003 (880 kDa, Virus from Rhodobacter capsulatus SB 1003)
Tail (Complex from Rhodobacter capsulatus SB 1003)

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