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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"IRON/SULFUR CLUSTER" AND xref_links:"cpx" AND author_name:"Steimle S"

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EMD-23904

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RNA polymerase II pre-initiation complex (PIC1)

Release date: Feb. 2, 2022
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7ml0
Q-score: 0.417

Yang C, Fujiwara R, Kim HJ, Basnet P, Zhu Y, Gorbea Colon JJ, Steimle S, Garcia BA, Kaplan CD, Murakami K

Mol Cell (2022) 82 pp. 660-676.e9 [ Pubmed: 35051353 DOI: doi:10.1016/j.molcel.2021.12.020 ]

Sample:

General transcription and dna repair factor iih subunit tfb5 (8 kDa, Protein from Baker's yeast)
Dna-directed rna polymerase subunit (191 kDa, Protein from Baker's yeast)
Dna-directed rna polymerase subunit (58 kDa, Protein from Baker's yeast)
Dna-directed rna polymerases ii subunit rpabc5 (8 kDa, Protein from Baker's yeast)
Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Baker's yeast)
Rna polymerase ii transcription factor b subunit 2 (58 kDa, Protein from Baker's yeast)
Dna-directed rna polymerase subunit beta (138 kDa, Protein from Baker's yeast)
Pol ii + tfiib (Complex from Saccharomyces cerevisiae)
Transcription initiation factor iie subunit beta (37 kDa, Protein from Baker's yeast)
Transcription initiation factor iif subunit alpha (82 kDa, Protein from Baker's yeast)
Transcription initiation factor iib (38 kDa, Protein from Baker's yeast)
Dna-directed rna polymerase ii subunit rpb3 (35 kDa, Protein from Baker's yeast)
Rna polymerase ii pre-initiation complex (pic1) (Complex from Saccharomyces cerevisiae)
General transcription and dna repair factor iih helicase subunit xpd (89 kDa, Protein from Baker's yeast)
Zinc ion (65 Da, Ligand)
Transcription initiation factor iie subunit alpha (54 kDa, Protein from Baker's yeast)
Transcription initiation factor iif subunit beta (46 kDa, Protein from Baker's yeast)
Dna-directed rna polymerase ii subunit rpb4 (37 kDa, Protein from Baker's yeast)
General transcription and dna repair factor iih subunit ssl1 (52 kDa, Protein from Baker's yeast)
Tata-box-binding protein (27 kDa, Protein from Baker's yeast)
Bj4_g0050160.mrna.1.cds.1 (38 kDa, Protein from Baker's yeast)
Non-template strand dna (20 kDa, DNA from Saccharomyces cerevisiae)
Dna-directed rna polymerase ii subunit rpb4 (25 kDa, Protein from Baker's yeast)
Magnesium ion (24 Da, Ligand)
Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Baker's yeast)
Tfiih (Complex from Saccharomyces cerevisiae)
Dna-directed rna polymerase ii subunit rpb11 (13 kDa, Protein from Baker's yeast)
Template strand dna (20 kDa, DNA from Saccharomyces cerevisiae)
Iron/sulfur cluster (351 Da, Ligand)
Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Baker's yeast)
General transcription and dna repair factor iih helicase subunit xpb (95 kDa, Protein from Baker's yeast)
Dna-directed rna polymerases ii subunit rpabc4 (7 kDa, Protein from Baker's yeast)
Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Baker's yeast)
Dna+tbp+tfiie+tfiif (Complex from Saccharomyces cerevisiae)
Dna-directed rna polymerases i,ii,and iii subunit rpabc2 (17 kDa, Protein from Baker's yeast)

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EMD-23905

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RNA polymerase II pre-initiation complex (PIC2)

Release date: Feb. 2, 2022
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7ml1
Q-score: 0.291

Yang C, Fujiwara R, Kim HJ, Basnet P, Zhu Y, Gorbea Colon JJ, Steimle S, Garcia BA, Kaplan CD, Murakami K

Mol Cell (2022) 82 pp. 660-676.e9 [ Pubmed: 35051353 DOI: doi:10.1016/j.molcel.2021.12.020 ]

Sample:

General transcription and dna repair factor iih subunit tfb5 (8 kDa, Protein from Baker's yeast)
Template strand dna (17 kDa, DNA from Saccharomyces cerevisiae)
Rna polymerase ii pre-initiation complex (pic2) (Complex from Saccharomyces cerevisiae)
Non-template strand dna (17 kDa, DNA from Saccharomyces cerevisiae)
Dna-directed rna polymerase subunit (191 kDa, Protein from Baker's yeast)
Dna-directed rna polymerases ii subunit rpabc5 (8 kDa, Protein from Baker's yeast)
Tfb1 (58 kDa, Protein from Baker's yeast)
Rna polymerase ii transcription factor b subunit 2 (58 kDa, Protein from Baker's yeast)
Dna-directed rna polymerase subunit beta (138 kDa, Protein from Baker's yeast)
Pol ii + tfiib (Complex from Saccharomyces cerevisiae)
Transcription initiation factor iie subunit beta (37 kDa, Protein from Baker's yeast)
Transcription initiation factor iif subunit alpha (82 kDa, Protein from Baker's yeast)
Transcription initiation factor iib (38 kDa, Protein from Baker's yeast)
Dna+tfiia+tfiie+tfiif (Complex from Saccharomyces cerevisiae)
Dna-directed rna polymerase ii subunit rpb3 (35 kDa, Protein from Baker's yeast)
Transcription initiation factor iia subunit 2 (13 kDa, Protein from Baker's yeast)
General transcription and dna repair factor iih subunit tfb4 (37 kDa, Protein from Baker's yeast)
General transcription and dna repair factor iih helicase subunit xpd (89 kDa, Protein from Baker's yeast)
Zinc ion (65 Da, Ligand)
Transcription initiation factor iie subunit alpha (54 kDa, Protein from Baker's yeast)
Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Baker's yeast)
Transcription initiation factor iif subunit beta (46 kDa, Protein from Baker's yeast)
General transcription and dna repair factor iih subunit ssl1 (52 kDa, Protein from Baker's yeast)
Tata-box-binding protein (27 kDa, Protein from Baker's yeast)
Bj4_g0050160.mrna.1.cds.1 (38 kDa, Protein from Baker's yeast)
Dna-directed rna polymerase ii subunit rpb4 (25 kDa, Protein from Baker's yeast)
Transcription initiation factor iia large subunit (32 kDa, Protein from Baker's yeast)
Magnesium ion (24 Da, Ligand)
Tfiih (Complex from Saccharomyces cerevisiae)
Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Baker's yeast)
Dna-directed rna polymerase ii subunit rpb11 (13 kDa, Protein from Baker's yeast)
Iron/sulfur cluster (351 Da, Ligand)
Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Baker's yeast)
General transcription and dna repair factor iih helicase subunit xpb (95 kDa, Protein from Baker's yeast)
Dna-directed rna polymerases ii subunit rpabc4 (7 kDa, Protein from Baker's yeast)
Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Baker's yeast)
Dna-directed rna polymerases i,ii,and iii subunit rpabc2 (17 kDa, Protein from Baker's yeast)

[Show more]

EMD-23906

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RNA polymerase II pre-initiation complex (PIC3)

Release date: Feb. 2, 2022
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7ml2
Q-score: 0.241

Yang C, Fujiwara R, Kim HJ, Basnet P, Zhu Y, Gorbea Colon JJ, Steimle S, Garcia BA, Kaplan CD, Murakami K

Mol Cell (2022) 82 pp. 660-676.e9 [ Pubmed: 35051353 DOI: doi:10.1016/j.molcel.2021.12.020 ]

Sample:

Transcription initiation factor iia large subunit (32 kDa, Protein from Baker's yeast)
Tfiih (Complex from Saccharomyces cerevisiae)
General transcription and dna repair factor iih helicase subunit xpd (89 kDa, Protein from Baker's yeast)
Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Baker's yeast)
Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Baker's yeast)
Transcription initiation factor iif subunit beta (46 kDa, Protein from Baker's yeast)
Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Baker's yeast)
Transcription initiation factor iif subunit alpha (82 kDa, Protein from Baker's yeast)
Dna-directed rna polymerase ii subunit rpb3 (35 kDa, Protein from Baker's yeast)
Dna-directed rna polymerase ii subunit rpb4 (25 kDa, Protein from Baker's yeast)
Transcription initiation factor iia subunit 2 (13 kDa, Protein from Baker's yeast)
Template strand dna (17 kDa, DNA from Saccharomyces cerevisiae)
Dna-directed rna polymerases i,ii,and iii subunit rpabc2 (17 kDa, Protein from Baker's yeast)
Dna+tbp+tfiia+tfiie+tfiif (Complex from Saccharomyces cerevisiae)
Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Baker's yeast)
General transcription and dna repair factor iih (52 kDa, Protein from Baker's yeast)
Magnesium ion (24 Da, Ligand)
Dna-directed rna polymerase subunit beta (138 kDa, Protein from Baker's yeast)
Rna polymerase ii pre-initiation complex (pic3) (Complex from Saccharomyces cerevisiae)
Bj4_g0004860.mrna.1.cds.1 (27 kDa, Protein from Baker's yeast)
Transcription initiation factor iie subunit beta (37 kDa, Protein from Baker's yeast)
Tfb1 (58 kDa, Protein from Baker's yeast)
Rna polymerase ii transcription factor b subunit 2 (58 kDa, Protein from Baker's yeast)
Iron/sulfur cluster (351 Da, Ligand)
Transcription initiation factor iie subunit alpha (54 kDa, Protein from Baker's yeast)
Dna-directed rna polymerase subunit (191 kDa, Protein from Baker's yeast)
General transcription and dna repair factor iih subunit tfb5 (8 kDa, Protein from Baker's yeast)
Pol ii + tfiib (Complex from Saccharomyces cerevisiae)
General transcription and dna repair factor iih helicase subunit xpb (95 kDa, Protein from Baker's yeast)
Zinc ion (65 Da, Ligand)
Non-template strand dna (17 kDa, DNA from Saccharomyces cerevisiae)
Tfb4 (37 kDa, Protein from Baker's yeast)
Transcription initiation factor iib (38 kDa, Protein from Baker's yeast)
Dna-directed rna polymerases ii subunit rpabc5 (8 kDa, Protein from Baker's yeast)
Bj4_g0050160.mrna.1.cds.1 (38 kDa, Protein from Baker's yeast)
Dna-directed rna polymerase ii subunit rpb11 (13 kDa, Protein from Baker's yeast)
Dna-directed rna polymerases ii subunit rpabc4 (7 kDa, Protein from Baker's yeast)

[Show more]

EMD-23908

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RNA polymerase II initially transcribing complex (ITC)

Release date: Feb. 2, 2022
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7ml4
Q-score: 0.281

Yang C, Fujiwara R, Kim HJ, Basnet P, Zhu Y, Gorbea Colon JJ, Steimle S, Garcia BA, Kaplan CD, Murakami K

Mol Cell (2022) 82 pp. 660-676.e9 [ Pubmed: 35051353 DOI: doi:10.1016/j.molcel.2021.12.020 ]

Sample:

Transcription initiation factor iia large subunit (32 kDa, Protein from baker's yeast)
Tfiih (Complex from Saccharomyces cerevisiae)
Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from baker's yeast)
Rna (1 kDa, RNA from Saccharomyces cerevisiae)
General transcription and dna repair factor iih subunit tfb4 (37 kDa, Protein from baker's yeast)
Dna-directed rna polymerase ii subunit rpb11 (13 kDa, Protein from baker's yeast)
Non-template strand dna (11 kDa, DNA from Saccharomyces cerevisiae)
Transcription initiation factor iie subunit alpha (54 kDa, Protein from baker's yeast)
Tata-box-binding protein (27 kDa, Protein from baker's yeast)
Transcription initiation factor iif subunit beta (46 kDa, Protein from baker's yeast)
Magnesium ion (24 Da, Ligand)
Dna+tbp+tfiia+tfiie+tfiif (Complex from Saccharomyces cerevisiae)
Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from baker's yeast)
General transcription and dna repair factor iih (52 kDa, Protein from baker's yeast)
Tfb1 (58 kDa, Protein from Baker's yeast)
Dna-directed rna polymerases ii subunit rpabc5 (8 kDa, Protein from baker's yeast)
Transcription initiation factor iif subunit alpha (82 kDa, Protein from baker's yeast)
Dna-directed rna polymerase ii subunit rpb3 (35 kDa, Protein from baker's yeast)
General transcription and dna repair factor iih helicase subunit xpb (95 kDa, Protein from baker's yeast)
Dna-directed rna polymerases i,ii,and iii subunit rpabc2 (17 kDa, Protein from baker's yeast)
Iron/sulfur cluster (351 Da, Ligand)
Pol ii + tfiib + rna (Complex from Saccharomyces cerevisiae)
Dna-directed rna polymerase subunit beta (138 kDa, Protein from baker's yeast)
General transcription and dna repair factor iih subunit tfb5 (8 kDa, Protein from baker's yeast)
Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from baker's yeast)
Dna-directed rna polymerase subunit (191 kDa, Protein from baker's yeast)
General transcription and dna repair factor iih helicase subunit xpd (89 kDa, Protein from baker's yeast)
Zinc ion (65 Da, Ligand)
Rna polymerase ii transcription factor b subunit 2 (58 kDa, Protein from baker's yeast)
Dna-directed rna polymerase ii subunit rpb4 (25 kDa, Protein from baker's yeast)
Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from baker's yeast)
Transcription initiation factor iie subunit beta (37 kDa, Protein from baker's yeast)
Bj4_g0050160.mrna.1.cds.1 (38 kDa, Protein from baker's yeast)
Transcription initiation factor iib (38 kDa, Protein from baker's yeast)
Dna-directed rna polymerases ii subunit rpabc4 (7 kDa, Protein from baker's yeast)
Transcription initiation factor iia subunit 2 (13 kDa, Protein from baker's yeast)
Rna polymerase ii initially transcribing complex (itc) (Complex from Saccharomyces cerevisiae)
Template strand dna (34 kDa, DNA from Saccharomyces cerevisiae)

[Show more]

Sort by: Download

Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [4]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: