Structure of cyanobacterial photosystem I-IsiA-flavodoxin supercomplex
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6kif
Q-score: 0.36
Cao P, Cao D, Si L, Su X, Tian L, Chang W, Liu Z, Zhang X, Li M
Nat Plants (2020) 6 pp. 167-176 [ Pubmed: 32042157 DOI: doi:10.1038/s41477-020-0593-7 ]
- Photosystem i p700 chlorophyll a apoprotein a2 (81 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- Phylloquinone (450 Da, Ligand)
- Iron stress-induced chlorophyll-binding protein (37 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- Chlorophyll a (893 Da, Ligand)
- Photosystem i-isia-flavodoxin supercomplex (Complex from Synechococcus elongatus PCC 7942)
- Photosystem i iron-sulfur center (8 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- Photosystem i psai protein (4 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- Photosystem i reaction center subunit ii (15 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Flavodoxin (18 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- Beta-carotene (536 Da, Ligand)
- Psam (3 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- Flavin mononucleotide (456 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- Photosystem i reaction center subunit iv (8 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- Water (18 Da, Ligand)
- Photosystem i reaction center subunit xi (17 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Photosystem i reaction center subunit iii (17 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem i reaction center subunit psak (8 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- Iron/sulfur cluster (351 Da, Ligand)
Structure of cyanobacterial photosystem I-IsiA supercomplex
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6kig
Q-score: 0.419
Cao P, Cao D, Si L, Su X, Tian L, Chang W, Liu Z, Zhang X, Li M
Nat Plants (2020) 6 pp. 167-176 [ Pubmed: 32042157 DOI: doi:10.1038/s41477-020-0593-7 ]
- Psam (3 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- Photosystem i p700 chlorophyll a apoprotein a2 (81 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- Photosystem i psai protein (4 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- Beta-carotene (536 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- Iron stress-induced chlorophyll-binding protein (37 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- Photosystem i reaction center subunit psak (8 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- Photosystem i iron-sulfur center (8 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- Photosystem i-isia supercomplex (Complex from Synechococcus elongatus PCC 7942)
- Photosystem i reaction center subunit iv (8 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit iii (17 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Water (18 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- Photosystem i reaction center subunit xi (17 kDa, Protein from Synechococcus elongatus (strain PCC 7942))
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Structure of photosystem I supercomplex with light-harvesting complexes I and II
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 5zji
Q-score: 0.494
Pan X, Ma J, Su X, Cao P, Chang W, Liu Z, Zhang X, Li M
Science (2018) 360 pp. 1109-1113 [ Pubmed: 29880686 DOI: doi:10.1126/science.aat1156 ]
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (29 kDa, Protein from Maize)
- Photosystem i reaction center subunit iii (23 kDa, Protein from Maize)
- 16kda membrane protein (14 kDa, Protein from Maize)
- Chlorophyll a-b binding protein, chloroplastic (24 kDa, Protein from Maize)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Maize)
- Phylloquinone (450 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Maize)
- Photosystem i reaction center subunit vi, chloroplastic (14 kDa, Protein from Maize)
- Photosystem i reaction center subunit psak (13 kDa, Protein from Maize)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Maize)
- Chlorophyll a-b binding protein 1, chloroplastic (24 kDa, Protein from Maize)
- Supercomplex of plant psi-lhci-lhcii from zea mays (Complex from Zea mays)
- Chlorophyll a-b binding protein, chloroplastic (29 kDa, Protein from Maize)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Maize)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from maize)
- Photosystem i reaction center subunit iv a (14 kDa, Protein from Maize)
- Photosystem i reaction center subunit xi (22 kDa, Protein from Maize)
- Photosystem i reaction center subunit n (15 kDa, Protein from Maize)
- Photosystem i reaction center subunit v (15 kDa, Protein from Maize)
- Photosystem i reaction center subunit ii (21 kDa, Protein from Maize)
- Photosystem i subunit vii (8 kDa, Protein from maize)
- Chlorophyll a (893 Da, Ligand)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (26 kDa, Protein from Maize)
- Iron/sulfur cluster (351 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
Photosystem I of Chlamydomonas reinhardtii
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 6ijj
Q-score: 0.537
Su X, Ma J, Pan X, Zhao X, Chang W, Liu Z, Zhang X, Li M
Nat Plants (2019) 5 pp. 273-281 [ Pubmed: 30850819 DOI: doi:10.1038/s41477-019-0380-5 ]
- Lhca3 (32 kDa, Protein from Chlamydomonas reinhardtii)
- Phylloquinone (450 Da, Ligand)
- Lhca8 (29 kDa, Protein from Chlamydomonas reinhardtii)
- Psai (10 kDa, Protein from Chlamydomonas reinhardtii)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlamydomonas reinhardtii psi with eight light harvesting antennae (Complex from Chlamydomonas reinhardtii)
- Chlorophyll a (893 Da, Ligand)
- Psaf (24 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Lhca1 (26 kDa, Protein from Chlamydomonas reinhardtii)
- Beta-carotene (536 Da, Ligand)
- Psae (16 kDa, Protein from Chlamydomonas reinhardtii)
- Psak (16 kDa, Protein from Chlamydomonas reinhardtii)
- Psab (82 kDa, Protein from Chlamydomonas reinhardtii)
- Lhca4 (31 kDa, Protein from Chlamydomonas reinhardtii)
- Lhca7 (26 kDa, Protein from Chlamydomonas reinhardtii)
- Psaa (83 kDa, Protein from Chlamydomonas reinhardtii)
- Lhca6 (35 kDa, Protein from Chlamydomonas reinhardtii)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Psaj (4 kDa, Protein from Chlamydomonas reinhardtii)
- Psac (8 kDa, Protein from Chlamydomonas reinhardtii)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Psad (21 kDa, Protein from Chlamydomonas reinhardtii)
- Psal (27 kDa, Protein from Chlamydomonas reinhardtii)
- Lhca5 (30 kDa, Protein from Chlamydomonas reinhardtii)
- Iron/sulfur cluster (351 Da, Ligand)