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sample_name:"L51_S25_CI-B8 domain-containing protein"
Leishmania Major mitochondrial ribosome
Release date: June 23, 2021
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7ane
Q-score: 0.321
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7ane
Q-score: 0.321
Soufari H, Waltz F, Parrot C, Durrieu-Gaillard S, Bochler A, Kuhn L, Sissler M, Hashem Y
PNAS (2020) 117 pp. 29851-29861 [ DOI: doi:10.1073/pnas.2011301117 Pubmed: 33168716 ]
Sample:
- Ul24m (53 kDa, Protein from Leishmania major)
- Ms37 (24 kDa, Protein from Leishmania major)
- Bl19m (16 kDa, Protein from Leishmania major)
- Ml82 (37 kDa, Protein from Leishmania major)
- Ml96 (16 kDa, Protein from Leishmania major)
- Ml94 (17 kDa, Protein from Leishmania major)
- Ml49 (26 kDa, Protein from Leishmania major)
- Bl28m (27 kDa, Protein from Leishmania major)
- Ml72 (56 kDa, Protein from Leishmania major)
- Ms26 (49 kDa, Protein from Leishmania major)
- Akap7_nls domain-containing protein (31 kDa, Protein from Leishmania major)
- Ms52 (75 kDa, Protein from Leishmania major)
- Us14m (19 kDa, Protein from Leishmania major)
- Ml42 (22 kDa, Protein from Leishmania major)
- Ml100 (146 kDa, Protein from Leishmania major)
- Ml76 (38 kDa, Protein from Leishmania major)
- Ms55 (65 kDa, Protein from Leishmania major)
- Bl20m (22 kDa, Protein from Leishmania major)
- Ms34 (29 kDa, Protein from Leishmania major)
- Bl36m (21 kDa, Protein from Leishmania major)
- Ribosomal_s5_c domain-containing protein (49 kDa, Protein from Leishmania major)
- Ul29m (54 kDa, Protein from Leishmania major)
- Ms48 (199 kDa, Protein from Leishmania major)
- Ubiquitin-like domain-containing protein (27 kDa, Protein from Leishmania major)
- Ribosomal_l16 domain-containing protein (18 kDa, Protein from Leishmania major)
- Ml84 (24 kDa, Protein from Leishmania major)
- Leishmania major mitochondrial riobosome (Complex from Leishmania major)
- Ms29 (54 kDa, Protein from Leishmania major)
- Ml63 (18 kDa, Protein from Leishmania major)
- Ml41 (22 kDa, Protein from Leishmania major)
- L51_s25_ci-b8 domain-containing protein (31 kDa, Protein from Leishmania major)
- Ms58 (36 kDa, Protein from Leishmania major)
- Uc (12 kDa, Protein from Leishmania major)
- Ml38 (57 kDa, Protein from Leishmania major)
- Putative ribosomal protein l2 (43 kDa, Protein from Leishmania major)
- Bl27m (21 kDa, Protein from Leishmania major)
- Protein fyv4, mitochondrial (22 kDa, Protein from Leishmania major)
- Putative ribosomal protein l11 (40 kDa, Protein from Leishmania major)
- Bl21m (20 kDa, Protein from Leishmania major)
- Putative 50s ribosomal protein l17 (35 kDa, Protein from Leishmania major)
- Bl35m (18 kDa, Protein from Leishmania major)
- Ms49 (133 kDa, Protein from Leishmania major)
- Ml86 (21 kDa, Protein from Leishmania major)
- Ml53 (35 kDa, Protein from Leishmania major)
- Ms73 (11 kDa, Protein from Leishmania major)
- Ms57 (45 kDa, Protein from Leishmania major)
- Ml52 (29 kDa, Protein from Leishmania major)
- Bl31m (21 kDa, Protein from Leishmania major)
- Ml70 (50 kDa, Protein from Leishmania major)
- Bs18m (37 kDa, Protein from Leishmania major)
- Peptidyl-prolyl cis-trans isomerase (25 kDa, Protein from Leishmania major)
- Ml75 (39 kDa, Protein from Leishmania major)
- Putative ribosomal protein l14 (21 kDa, Protein from Leishmania major)
- Ms53 (72 kDa, Protein from Leishmania major)
- Us3m (10 kDa, Protein from Leishmania major)
- Lim zinc-binding domain-containing protein (25 kDa, Protein from Leishmania major)
- Ul10m (22 kDa, Protein from Leishmania major)
- Us11m (40 kDa, Protein from Leishmania major)
- Large ribosomal rna (6 MDa, RNA from Leishmania major)
- Ml73 (36 kDa, Protein from Leishmania major)
- Rhodanese domain-containing protein (30 kDa, Protein from Leishmania major)
- Ms60 (35 kDa, Protein from Leishmania major)
- Ms69 (16 kDa, Protein from Leishmania major)
- Ms43 (51 kDa, Protein from Leishmania major)
- Us8m (35 kDa, Protein from Leishmania major)
- Bs6m (18 kDa, Protein from Leishmania major)
- Ms35 (99 kDa, Protein from Leishmania major)
- Ua (17 kDa, Protein from Leishmania major)
- Ml40 (33 kDa, Protein from Leishmania major)
- Ul22m (32 kDa, Protein from Leishmania major)
- Ms59 (35 kDa, Protein from Leishmania major)
- Us9m (39 kDa, Protein from Leishmania major)
- Putative superoxide dismutase (30 kDa, Protein from Leishmania major)
- Ribosomal_l9 domain-containing protein (30 kDa, Protein from Leishmania major)
- Ml87 (22 kDa, Protein from Leishmania major)
- Ud (8 kDa, Protein from Leishmania major)
- Ml95 (18 kDa, Protein from Leishmania major)
- Ms23 (36 kDa, Protein from Leishmania major)
- Ml59/64 (28 kDa, Protein from Leishmania major)
- Ribosomal_l18e/l15p domain-containing protein (43 kDa, Protein from Leishmania major)
- Ml74 (39 kDa, Protein from Leishmania major)
- Bs16m (22 kDa, Protein from Leishmania major)
- Magnesium ion (24 Da, Ligand)
- Ms61 (33 kDa, Protein from Leishmania major)
- Bl33m (13 kDa, Protein from Leishmania major)
- Ub (5 kDa, Protein from Leishmania major)
- Ribosomal protein l3-like protein (53 kDa, Protein from Leishmania major)
- Ms70 (21 kDa, Protein from Leishmania major)
- Ml99 (13 kDa, Protein from Leishmania major)
- Ms63 (33 kDa, Protein from Leishmania major)
- Ml97 (12 kDa, Protein from Leishmania major)
- C2h2-type domain-containing protein (20 kDa, Protein from Leishmania major)
- Ms50 (139 kDa, Protein from Leishmania major)
- Ms33 (20 kDa, Protein from Leishmania major)
- Ms72 (19 kDa, Protein from Leishmania major)
- 50s ribosomal protein l13-like protein (20 kDa, Protein from Leishmania major)
- Ul4m (49 kDa, Protein from Leishmania major)
- Ml69 (54 kDa, Protein from Leishmania major)
- Ml93 (18 kDa, Protein from Leishmania major)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Ml98 (13 kDa, Protein from Leishmania major)
- Ms71 (19 kDa, Protein from Leishmania major)
- Excreted/secreted protein 15 (92 kDa, Protein from Leishmania major)
- Ms22 (73 kDa, Protein from Leishmania major)
- Ms47 (131 kDa, Protein from Leishmania major)
- Ml88 (22 kDa, Protein from Leishmania major)
- Peptidyl-prolyl cis-trans isomerase (28 kDa, Protein from Leishmania major)
- Ml85 (27 kDa, Protein from Leishmania major)
- Zinc ion (65 Da, Ligand)
- Ms65 (30 kDa, Protein from Leishmania major)
- Ml79 (33 kDa, Protein from Leishmania major)
- Ml80 (27 kDa, Protein from Leishmania major)
- Us10m (92 kDa, Protein from Leishmania major)
- Ms66 (44 kDa, Protein from Leishmania major)
- 30s ribosomal protein s17-like protein (36 kDa, Protein from Leishmania major)
- Ul23m (28 kDa, Protein from Leishmania major)
- Ms56 (43 kDa, Protein from Leishmania major)
- Ms62 (27 kDa, Protein from Leishmania major)
- Mrp-l46 domain-containing protein (33 kDa, Protein from Leishmania major)
- Bs21m (22 kDa, Protein from Leishmania major)
- Ml68 (65 kDa, Protein from Leishmania major)
- Us15m (50 kDa, Protein from Leishmania major)
- Ul30m (45 kDa, Protein from Leishmania major)
- Us19m (19 kDa, Protein from Leishmania major)
- Ml89 (21 kDa, Protein from Leishmania major)
- Bl32m (9 kDa, Protein from Leishmania major)
- Ms51 (94 kDa, Protein from Leishmania major)
The Large subunit of the Kinetoplastid mitochondrial ribosome
Release date: April 28, 2021
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7aih
Q-score: 0.479
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7aih
Q-score: 0.479
Soufari H, Waltz F, Parrot C, Durrieu-Gaillard S, Bochler A, Kuhn L, Sissler M, Hashem Y
PNAS (2020) 117 pp. 29851-29861 [ DOI: doi:10.1073/pnas.2011301117 Pubmed: 33168716 ]
Sample:
- Ml49 (26 kDa, Protein from Leishmania major)
- Putative ribosomal protein l2 (43 kDa, Protein from Leishmania major)
- Lim zinc-binding domain-containing protein (25 kDa, Protein from Leishmania major)
- Ml96 (16 kDa, Protein from Leishmania major)
- Ul29m (54 kDa, Protein from Leishmania major)
- Ml84 (24 kDa, Protein from Leishmania major)
- Ul22m (32 kDa, Protein from Leishmania major)
- Ml82 (37 kDa, Protein from Leishmania major)
- Peptidyl-prolyl cis-trans isomerase (28 kDa, Protein from Leishmania major)
- 50s ribosomal protein l13-like protein (20 kDa, Protein from Leishmania major)
- Ml98 (13 kDa, Protein from Leishmania major)
- Ml52,ml52 (29 kDa, Protein from Leishmania major)
- Ml63 (18 kDa, Protein from Leishmania major)
- Bl20 (22 kDa, Protein from Leishmania major)
- Ml97 (12 kDa, Protein from Leishmania major)
- Ribosomal_l16 domain-containing protein (19 kDa, Protein from Leishmania major)
- Ml95 (18 kDa, Protein from Leishmania major)
- Ml88 (22 kDa, Protein from Leishmania major)
- Bl21m (21 kDa, Protein from Leishmania major)
- Bl27m (21 kDa, Protein from Leishmania major)
- Mrp-l46 domain-containing protein (33 kDa, Protein from Leishmania major)
- Ml89 (21 kDa, Protein from Leishmania major)
- Ml87 (22 kDa, Protein from Leishmania major)
- Ml72 (56 kDa, Protein from Leishmania major)
- Ua (17 kDa, Protein from Leishmania major)
- Ul4m (50 kDa, Protein from Leishmania major)
- Ml69 (54 kDa, Protein from Leishmania major)
- Ml54/69 (28 kDa, Protein from Leishmania major)
- Ml75 (39 kDa, Protein from Leishmania major)
- Ul23m (28 kDa, Protein from Leishmania major)
- Leishmania mitochondrial ribosome (Complex from Leishmania tarentolae)
- Ml99 (13 kDa, Protein from Leishmania major)
- L51_s25_ci-b8 domain-containing protein (31 kDa, Protein from Leishmania major)
- Ribosomal protein l3-like protein (54 kDa, Protein from Leishmania major)
- Bl32m (9 kDa, Protein from Leishmania major)
- Ml85 (27 kDa, Protein from Leishmania major)
- Ml100 (146 kDa, Protein from Leishmania major)
- Bl28m (27 kDa, Protein from Leishmania major)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Ml38 (58 kDa, Protein from Leishmania major)
- Ul24m (53 kDa, Protein from Leishmania major)
- Ribosomal_l9 domain-containing protein (30 kDa, Protein from Leishmania major)
- Ml41 (22 kDa, Protein from Leishmania major)
- Ml70 (50 kDa, Protein from Leishmania major)
- Ribosomal rna (2 MDa, RNA from Leishmania major)
- Bl36m (21 kDa, Protein from Leishmania major)
- Ml79 (33 kDa, Protein from Leishmania major)
- Putative 50s ribosomal protein l17 (35 kDa, Protein from Leishmania major)
- Uc (12 kDa, Protein from Leishmania major)
- Bl35m (18 kDa, Protein from Leishmania major)
- Ml42 (22 kDa, Protein from Leishmania major)
- Ud (8 kDa, Protein from Leishmania major)
- Zinc ion (65 Da, Ligand)
- Ml73 (36 kDa, Protein from Leishmania major)
- Putative ribosomal protein l14 (21 kDa, Protein from Leishmania major)
- Ml68 (65 kDa, Protein from Leishmania major)
- Peptidyl-prolyl cis-trans isomerase (25 kDa, Protein from Leishmania major)
- C2h2-type domain-containing protein (20 kDa, Protein from Leishmania major)
- Ribosomal_l18e/l15p domain-containing protein (43 kDa, Protein from Leishmania major)
- Ml74 (39 kDa, Protein from Leishmania major)
- Ml80 (27 kDa, Protein from Leishmania major)
- Bl19m (16 kDa, Protein from Leishmania major)
- Putative ribosomal protein l11 (40 kDa, Protein from Leishmania major)
- Ub (5 kDa, Protein from Leishmania major)
- Ml94 (17 kDa, Protein from Leishmania major)
- Bl31m (21 kDa, Protein from Leishmania major)
- Ml93 (18 kDa, Protein from Leishmania major)
- Ml40 (33 kDa, Protein from Leishmania major)
- Ml76 (38 kDa, Protein from Leishmania major)
- Bl33m (13 kDa, Protein from Leishmania major)
- Ml53 (35 kDa, Protein from Leishmania major)
- Ml86 (21 kDa, Protein from Leishmania major)
- Ul10m (22 kDa, Protein from Leishmania major)
- Ul30m (45 kDa, Protein from Leishmania major)
Intermediate assembly of the Large subunit from Leishmania major mitochondrial ribosome
Release date: April 28, 2021
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7am2
Q-score: 0.469
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7am2
Q-score: 0.469
Soufari H, Waltz F, Parrot C, Durrieu-Gaillard S, Bochler A, Kuhn L, Sissler M, Hashem Y
PNAS (2020) 117 pp. 29851-29861 [ DOI: doi:10.1073/pnas.2011301117 Pubmed: 33168716 ]
Sample:
- Ml76 (38 kDa, Protein from Leishmania tarentolae)
- Putative 50s ribosomal protein l17 (35 kDa, Protein from Leishmania tarentolae)
- Ml75 (39 kDa, Protein from Leishmania tarentolae)
- Ml42 (22 kDa, Protein from Leishmania tarentolae)
- Ml68 (65 kDa, Protein from Leishmania tarentolae)
- Ua (14 kDa, Protein from Leishmania tarentolae)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ml72 (56 kDa, Protein from Leishmania tarentolae)
- 50s ribosomal protein l13-like protein (20 kDa, Protein from Leishmania tarentolae)
- Ml78 (33 kDa, Protein from Leishmania tarentolae)
- Bl20m (22 kDa, Protein from Leishmania tarentolae)
- Ul23m (28 kDa, Protein from Leishmania tarentolae)
- Ml53 (35 kDa, Protein from Leishmania tarentolae)
- Ml89 (21 kDa, Protein from Leishmania tarentolae)
- Ml84 (24 kDa, Protein from Leishmania tarentolae)
- Bl28m (27 kDa, Protein from Leishmania tarentolae)
- U1 (3 kDa, Protein from Leishmania tarentolae)
- Bl35m (18 kDa, Protein from Leishmania tarentolae)
- Ml86 (21 kDa, Protein from Leishmania tarentolae)
- Peptidyl-prolyl cis-trans isomerase (25 kDa, Protein from Leishmania tarentolae)
- Putative ribosomal protein l11 (40 kDa, Protein from Leishmania tarentolae)
- R1 (896 Da, RNA from Leishmania tarentolae)
- Ml88 (22 kDa, Protein from Leishmania tarentolae)
- Bl21m (21 kDa, Protein from Leishmania tarentolae)
- Ml49 (26 kDa, Protein from Leishmania tarentolae)
- Ml74 (39 kDa, Protein from Leishmania tarentolae)
- Ml87 (22 kDa, Protein from Leishmania tarentolae)
- Peptidyl-prolyl cis-trans isomerase (28 kDa, Protein from Leishmania tarentolae)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Ribosomal protein l3-like protein (54 kDa, Protein from Leishmania tarentolae)
- Ml41 (22 kDa, Protein from Leishmania tarentolae)
- Ml80 (27 kDa, Protein from Leishmania tarentolae)
- Ml94 (17 kDa, Protein from Leishmania tarentolae)
- Leishmania mitochondrial ribosome (Complex from Leishmania tarentolae)
- G domain-containing protein (86 kDa, Protein from Leishmania tarentolae)
- Lim zinc-binding domain-containing protein (25 kDa, Protein from Leishmania tarentolae)
- Ml71 (49 kDa, Protein from Leishmania tarentolae)
- Ml67 (97 kDa, Protein from Leishmania tarentolae)
- Ribosomal_l18e/l15p domain-containing protein (43 kDa, Protein from Leishmania tarentolae)
- U4 (9 kDa, Protein from Leishmania tarentolae)
- Rna uridylyltransferase (23 kDa, Protein from Leishmania tarentolae)
- Ribosomal_l9 domain-containing protein (30 kDa, Protein from Leishmania tarentolae)
- Ul22m (32 kDa, Protein from Leishmania tarentolae)
- Ml63 (18 kDa, Protein from Leishmania tarentolae)
- Ml98 (13 kDa, Protein from Leishmania tarentolae)
- R5 (1 kDa, RNA from Leishmania tarentolae)
- Ul30m (45 kDa, Protein from Leishmania tarentolae)
- Ul29m (54 kDa, Protein from Leishmania tarentolae)
- U5 (6 kDa, Protein from Leishmania tarentolae)
- Ml70 (50 kDa, Protein from Leishmania tarentolae)
- Ml52,ml52 (29 kDa, Protein from Leishmania tarentolae)
- U6 (13 kDa, Protein from Leishmania tarentolae)
- Bl19m (16 kDa, Protein from Leishmania tarentolae)
- Ml99 (13 kDa, Protein from Leishmania tarentolae)
- Gtpase der (56 kDa, Protein from Leishmania tarentolae)
- Dead/deah box helicase-like protein (87 kDa, Protein from Leishmania tarentolae)
- Ml100 (146 kDa, Protein from Leishmania tarentolae)
- Ribosomal rna (6 MDa, RNA from Leishmania tarentolae)
- L51_s25_ci-b8 domain-containing protein (31 kDa, Protein from Leishmania tarentolae)
- Ul4m (50 kDa, Protein from Leishmania tarentolae)
- Ml59/64 (28 kDa, Protein from Leishmania tarentolae)
- U8 (4 kDa, Protein from Leishmania tarentolae)
- Pseudouridylate synthase-like protein (47 kDa, Protein from Leishmania tarentolae)
- Spou_methylase domain-containing protein (63 kDa, Protein from Leishmania tarentolae)
- Ml81 (37 kDa, Protein from Leishmania tarentolae)
- G domain-containing protein (51 kDa, Protein from Leishmania tarentolae)
- U3 (5 kDa, Protein from Leishmania tarentolae)
- Ml85 (27 kDa, Protein from Leishmania tarentolae)
- R2 (10 kDa, RNA from Leishmania tarentolae)
- Acyl carrier protein (16 kDa, Protein from Leishmania tarentolae)
- Ml78 (3 kDa, Protein from Leishmania tarentolae)
- Ml95 (18 kDa, Protein from Leishmania tarentolae)
- Ul24m (53 kDa, Protein from Leishmania tarentolae)
- Bl32m (9 kDa, Protein from Leishmania tarentolae)
- Trud domain-containing protein (68 kDa, Protein from Leishmania tarentolae)
- Dnaj-like protein (45 kDa, Protein from Leishmania tarentolae)
- Putative ribosomal protein l14 (21 kDa, Protein from Leishmania tarentolae)
- U2 (2 kDa, Protein from Leishmania tarentolae)
- Ml93 (18 kDa, Protein from Leishmania tarentolae)
- L0r8f8 (14 kDa, Protein from Leishmania tarentolae)
Trypanosoma brucei mitochondrial ribosome large subunit assembly intermediate
Release date: Dec. 2, 2020
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7aoi
Q-score: 0.486
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7aoi
Q-score: 0.486
Tobiasson V, Gahura O, Aibara S, Baradaran R, Zikova A, Amunts A
EMBO J (2021) 40 pp. e106292-e106292 [ Pubmed: 33576519 DOI: doi:10.15252/embj.2020106292 ]
Sample:
- Ml49 (20 kDa, Protein from Trypanosoma brucei)
- Bl28m (25 kDa, Protein from Trypanosoma brucei)
- Ul29m (53 kDa, Protein from Trypanosoma brucei)
- Trypanosoma brucei mitochondrial ribosome large subunit assembly intermediate (2 MDa, Complex from Trypanosoma brucei)
- Unk5 (870 Da, Protein from Trypanosoma brucei)
- Ml52 (14 kDa, Protein from Trypanosoma brucei)
- Ml81 (25 kDa, Protein from Trypanosoma brucei)
- Unk10 (1 kDa, Protein from Trypanosoma brucei)
- Peptidyl-prolyl cis-trans isomerase (20 kDa, Protein from Trypanosoma brucei)
- 50s ribosomal protein l13 (20 kDa, Protein from Trypanosoma brucei)
- Mt-laf7,mt-laf7 (18 kDa, Protein from Trypanosoma brucei)
- Ml42 (15 kDa, Protein from Trypanosoma brucei)
- Ribosomal protein l23 (19 kDa, Protein from Trypanosoma brucei)
- Ml89 (22 kDa, Protein from Trypanosoma brucei)
- Ml70 (47 kDa, Protein from Trypanosoma brucei)
- Ribosomal protein l22p/l17e (31 kDa, Protein from Trypanosoma brucei)
- Ml87 (9 kDa, Protein from Trypanosoma brucei)
- Lipase (class 3) (18 kDa, Protein from Trypanosoma brucei)
- Ml67 (89 kDa, Protein from Trypanosoma brucei)
- Mt-laf19 (11 kDa, Protein from Trypanosoma brucei)
- Dead-box helicase, putative,mt-laf2 (76 kDa, Protein from Trypanosoma brucei)
- Ml100,ml100 (10 kDa, Protein from Trypanosoma brucei)
- Ml74 (25 kDa, Protein from Trypanosoma brucei)
- Gtp-binding protein, putative,mt-enga (60 kDa, Protein from Trypanosoma brucei)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Ml84 (23 kDa, Protein from Trypanosoma brucei)
- Chaperone protein dnaj, putative,ml77,chaperone protein dnaj, putative (30 kDa, Protein from Trypanosoma brucei)
- Ribosomal protein l3 mitochondrial, putative (42 kDa, Protein from Trypanosoma brucei)
- Ml98 (10 kDa, Protein from Trypanosoma brucei)
- Unk3 (1 kDa, Protein from Trypanosoma brucei)
- Acyl carrier protein (9 kDa, Protein from Trypanosoma brucei)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Peptidyl-prolyl cis-trans isomerase (20 kDa, Protein from Trypanosoma brucei)
- Ribosomal protein l4/l1 family (51 kDa, Protein from Trypanosoma brucei)
- Mt-laf12 (70 kDa, Protein from Trypanosoma brucei)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Ml94 (11 kDa, Protein from Trypanosoma brucei)
- Gtp-binding protein (33 kDa, Protein from Trypanosoma brucei)
- Bl33m (17 kDa, Protein from Trypanosoma brucei)
- Ml64,ml64 (23 kDa, Protein from Trypanosoma brucei)
- Ml85 (16 kDa, Protein from Trypanosoma brucei)
- Unk1 (3 kDa, Protein from Trypanosoma brucei)
- Ribosomal protein l11,ul11m (29 kDa, Protein from Trypanosoma brucei)
- Mitochondrial ribosomal protein l51 / s25 / ci-b8 domain containing protein (22 kDa, Protein from Trypanosoma brucei)
- Mitochondrial rna binding complex 1 subunit (37 kDa, Protein from Trypanosoma brucei)
- Ml99 (9 kDa, Protein from Trypanosoma brucei)
- Mt-laf8 (58 kDa, Protein from Trypanosoma brucei)
- Ribosomal_l9 domain-containing protein (25 kDa, Protein from Trypanosoma brucei)
- Tetratricopeptide repeat (48 kDa, Protein from Trypanosoma brucei)
- Lim domain containing protein,ml90 (13 kDa, Protein from Trypanosoma brucei)
- Mt-lsu rrna (242 kDa, RNA from Trypanosoma brucei)
- Ml63 (17 kDa, Protein from Trypanosoma brucei)
- Ul30m (17 kDa, Protein from Trypanosoma brucei)
- Mt-laf14 (78 kDa, Protein from Trypanosoma brucei)
- Mt-laf15_1 (21 kDa, Protein from Trypanosoma brucei)
- Unk7 (1 kDa, Protein from Trypanosoma brucei)
- Ul24m (39 kDa, Protein from Trypanosoma brucei)
- Rna uridylyltransferase (17 kDa, Protein from Trypanosoma brucei)
- Ml101 (21 kDa, Protein from Trypanosoma brucei)
- Pseudouridylate synthase, putative (42 kDa, Protein from Trypanosoma brucei)
- Unk8 (1 kDa, Protein from Trypanosoma brucei)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Ribosomal protein l21 (20 kDa, Protein from Trypanosoma brucei)
- Ml80 (25 kDa, Protein from Trypanosoma brucei)
- Spou rrna methylase family (48 kDa, Protein from Trypanosoma brucei)
- 50s ribosomal protein l14 (19 kDa, Protein from Trypanosoma brucei)
- Mt-laf4 (69 kDa, Protein from Trypanosoma brucei)
- Ml93 (16 kDa, Protein from Trypanosoma brucei)
- Ml68,ml68,ml68 (40 kDa, Protein from Trypanosoma brucei)
- Zinc ion (65 Da, Ligand)
- Bl32m (6 kDa, Protein from Trypanosoma brucei)
- Ml78 (31 kDa, Protein from Trypanosoma brucei)
- Ml53 (33 kDa, Protein from Trypanosoma brucei)
- Unk4 (586 Da, Protein from Trypanosoma brucei)
- Unk6/mt-laf15_2 (9 kDa, Protein from Trypanosoma brucei)
- Ribosomal_l18e/l15p domain-containing protein (41 kDa, Protein from Trypanosoma brucei)
- Ml76 (18 kDa, Protein from Trypanosoma brucei)
- Ml41 (13 kDa, Protein from Trypanosoma brucei)
- Ml95 (16 kDa, Protein from Trypanosoma brucei)
- Unk11 (3 kDa, Protein from Trypanosoma brucei)
- Magnesium ion (24 Da, Ligand)
- Ml71 (49 kDa, Protein from Trypanosoma brucei)
- Bl19m (16 kDa, Protein from Trypanosoma brucei)
- Unk2 (657 Da, Protein from Trypanosoma brucei)
- Complex1-lyr-like (10 kDa, Protein from Trypanosoma brucei)
- Ml86 (19 kDa, Protein from Trypanosoma brucei)
- Unk9 (2 kDa, Protein from Trypanosoma brucei)
- 50s ribosomal protein l17 (30 kDa, Protein from Trypanosoma brucei)
- Bl20m (22 kDa, Protein from Trypanosoma brucei)
The structure of the mitoribosome from Neurospora crassa in the P/E tRNA bound state
Release date: Nov. 11, 2020
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 6ywe
Q-score: 0.575
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 6ywe
Q-score: 0.575
Itoh Y, Naschberger A, Mortezaei N, Herrmann JM, Amunts A
Nat Commun (2020) 11 pp. 5187-5187 [ Pubmed: 33056988 DOI: doi:10.1038/s41467-020-18830-w ]
Sample:
- 23s rrna (1 MDa, RNA from Neurospora crassa)
- Related to ribosomal protein s5 (mitochondrial) (53 kDa, Protein from Neurospora crassa)
- Ribosomal_s7 domain-containing protein (33 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml20, mitochondrial (25 kDa, Protein from Neurospora crassa)
- Ml50 (49 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l1, mitochondrial (33 kDa, Protein from Neurospora crassa)
- Kow domain-containing protein (45 kDa, Protein from Neurospora crassa)
- Ribosomal protein s19/s15 (10 kDa, Protein from Neurospora crassa)
- Mitochondrial ribosomal protein dap3 (51 kDa, Protein from Neurospora crassa)
- Ribosomal protein l14 (14 kDa, Protein from Neurospora crassa)
- Us9m (35 kDa, Protein from Neurospora crassa)
- Ul11m (16 kDa, Protein from Neurospora crassa)
- Ribosomal_l9 domain-containing protein (33 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l3, mitochondrial (41 kDa, Protein from Neurospora crassa)
- Ml41 (11 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l2, mitochondrial (42 kDa, Protein from Neurospora crassa)
- Bl33m (7 kDa, Protein from Neurospora crassa)
- Ribosomal protein l15 (33 kDa, Protein from Neurospora crassa)
- Ms46 (43 kDa, Protein from Neurospora crassa)
- S4 rna-binding domain-containing protein (51 kDa, Protein from Neurospora crassa)
- Us8m (17 kDa, Protein from Neurospora crassa)
- Bl19m (28 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l4, variant (36 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l34, mitochondrial (14 kDa, Protein from Neurospora crassa)
- Ml67 (32 kDa, Protein from Neurospora crassa)
- Mitoribosome of neurospora crassa in the p/e state (Complex from Neurospora crassa)
- 37s ribosomal protein s25, mitochondrial (29 kDa, Protein from Neurospora crassa)
- Rnase iii domain-containing protein (29 kDa, Protein from Neurospora crassa)
- Ribosomal protein s12 (18 kDa, Protein from Neurospora crassa)
- 37s ribosomal protein s24, mitochondrial (44 kDa, Protein from Neurospora crassa)
- Potassium ion (39 Da, Ligand)
- Related to ribosomal protein yml49, mitochondrial (23 kDa, Protein from Neurospora crassa)
- Duf1713 domain-containing protein (38 kDa, Protein from Neurospora crassa)
- Ml40 (41 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml11, mitochondrial (37 kDa, Protein from Neurospora crassa)
- Probable ribosomal protein yml44, mitochondrial (11 kDa, Protein from Neurospora crassa)
- Ribosomal protein s6 (13 kDa, Protein from Neurospora crassa)
- Mitochondrial large ribosomal subunit (41 kDa, Protein from Neurospora crassa)
- Ml54 (23 kDa, Protein from Neurospora crassa)
- Ul23m (26 kDa, Protein from Neurospora crassa)
- Ms45 (39 kDa, Protein from Neurospora crassa)
- Probable ribosomal protein s13 (13 kDa, Protein from Neurospora crassa)
- Translational machinery component (42 kDa, Protein from Neurospora crassa)
- Mrp-l46 domain-containing protein (41 kDa, Protein from Neurospora crassa)
- 30s ribosomal protein s10, mitochondrial (30 kDa, Protein from Neurospora crassa)
- Bs16m (12 kDa, Protein from Neurospora crassa)
- Pebp-like protein (50 kDa, Protein from Neurospora crassa)
- Ms27 (44 kDa, Protein from Neurospora crassa)
- Us17m (18 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l30 (18 kDa, Protein from Neurospora crassa)
- Magnesium ion (24 Da, Ligand)
- L51_s25_ci-b8 domain-containing protein (22 kDa, Protein from Neurospora crassa)
- 54s ribosomal protein l31, mitochondrial (13 kDa, Protein from Neurospora crassa)
- Ul17m (22 kDa, Protein from Neurospora crassa)
- Ul13m (20 kDa, Protein from Neurospora crassa)
- Ribosomal protein (13 kDa, Protein from Neurospora crassa)
- Ml49 (18 kDa, Protein from Neurospora crassa)
- Trna p/e state (23 kDa, RNA from Neurospora crassa)
- Mrna (3 kDa, RNA from Neurospora crassa)
- Bl28m (31 kDa, Protein from Neurospora crassa)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Ribosomal protein s18 (28 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml32 (mitochondrial),mitochondrial ribosomal protein subunit l32 (14 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml36, mitochondrial (23 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l16, mitochondrial (27 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l5, mitochondrial (39 kDa, Protein from Neurospora crassa)
- Bs21m (25 kDa, Protein from Neurospora crassa)
- L51_s25_ci-b8 domain-containing protein (15 kDa, Protein from Neurospora crassa)
- 16s rrna (600 kDa, RNA from Neurospora crassa)
- Ms26 (35 kDa, Protein from Neurospora crassa)
- Spermine (202 Da, Ligand)
- Mitochondrial 37s ribosomal protein mrp2 (13 kDa, Protein from Neurospora crassa)
- Related to 60s ribosomal protein l2 (mitochondrial) (49 kDa, Protein from Neurospora crassa)
- 37s ribosomal protein mrp10, mitochondrial (9 kDa, Protein from Neurospora crassa)
- 3-hydroxyisobutyryl-coa hydrolase, mitochondrial (56 kDa, Protein from Neurospora crassa)
- Ribonuclease iii (48 kDa, Protein from Neurospora crassa)
- Zinc ion (65 Da, Ligand)
- Mitoc_ml59 domain-containing protein (18 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein s15 (mitochondrial) (35 kDa, Protein from Neurospora crassa)
- Ul6m (28 kDa, Protein from Neurospora crassa)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- If1 (10 kDa, Protein from Neurospora crassa)
- Mito ribosomal protein s2 (47 kDa, Protein from Neurospora crassa)
- Protein fyv4, mitochondrial (26 kDa, Protein from Neurospora crassa)
- Ribosomal protein s5 (58 kDa, Protein from Neurospora crassa)
- Manganese and iron superoxide dismutase (34 kDa, Protein from Neurospora crassa)
- 54s ribosomal protein l4, mitochondrial (29 kDa, Protein from Neurospora crassa)
- Ms33 (12 kDa, Protein from Neurospora crassa)
- Bs1m (51 kDa, Protein from Neurospora crassa)
The structure of the large subunit of the mitoribosome from Neurospora crassa
Release date: Nov. 11, 2020
Resolution: 2.74 Å
EM Method: Single-particle
Fitted PDBs: 6yws
Q-score: 0.601
Resolution: 2.74 Å
EM Method: Single-particle
Fitted PDBs: 6yws
Q-score: 0.601
Itoh Y, Naschberger A, Mortezaei N, Herrmann JM, Amunts A
Nat Commun (2020) 11 pp. 5187-5187 [ DOI: doi:10.1038/s41467-020-18830-w Pubmed: 33056988 ]
Sample:
- Ribosomal protein (13 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l6 (28 kDa, Protein from Neurospora crassa OR74A)
- Potassium ion (39 Da, Ligand)
- 60s ribosomal protein l2 (42 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal_l9 domain-containing protein (33 kDa, Protein from Neurospora crassa OR74A)
- Uncharacterized protein (49 kDa, Protein from Neurospora crassa OR74A)
- 50s ribosomal protein l14 (14 kDa, Protein from Neurospora crassa OR74A)
- Uncharacterized protein (37 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l20 (25 kDa, Protein from Neurospora crassa OR74A)
- 50s ribosomal subunit l30 (41 kDa, Protein from Neurospora crassa OR74A)
- Magnesium ion (24 Da, Ligand)
- Uncharacterized protein (32 kDa, Protein from Neurospora crassa OR74A)
- Uncharacterized protein (49 kDa, Protein from Neurospora crassa OR74A)
- 54s ribosomal protein l4, mitochondrial (29 kDa, Protein from Neurospora crassa OR74A)
- Uncharacterized protein (41 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l4, variant (36 kDa, Protein from Neurospora crassa OR74A)
- 50s ribosomal protein l5 (39 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein subunit l32 (14 kDa, Protein from Neurospora crassa OR74A)
- Aconitate hydratase (23 kDa, Protein from Neurospora crassa OR74A)
- 50s ribosomal protein l30 (18 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein l43 (15 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal protein l13 (20 kDa, Protein from Neurospora crassa OR74A)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Mitochondrial ribosomal protein l44 (11 kDa, Protein from Neurospora crassa OR74A)
- 50s ribosomal protein l24 (31 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l16 (27 kDa, Protein from Neurospora crassa OR74A)
- Mitoc_ml59 domain-containing protein (18 kDa, Protein from Neurospora crassa OR74A)
- Uncharacterized protein (23 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein subunit l23 (26 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l3 (48 kDa, Protein from Neurospora crassa OR74A)
- Kow domain-containing protein (45 kDa, Protein from Neurospora crassa OR74A)
- Uncharacterized protein (7 kDa, Protein from Neurospora crassa OR74A)
- Uncharacterized protein (18 kDa, Protein from Neurospora crassa OR74A)
- Uncharacterized protein (23 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l1 (33 kDa, Protein from Neurospora crassa OR74A)
- L51_s25_ci-b8 domain-containing protein (22 kDa, Protein from Neurospora crassa OR74A)
- Spermine (202 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Mitochondrial ribosomal protein (28 kDa, Protein from Neurospora crassa OR74A)
- Uncharacterized protein (11 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial large ribosomal subunit (41 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal protein l15 (33 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l19 (16 kDa, Protein from Neurospora crassa OR74A)
- Rnase iii domain-containing protein (29 kDa, Protein from Neurospora crassa OR74A)
- Mitoribosome of neurospora crassa (Complex from Neurospora crassa OR74A)
- 50s ribosomal protein l17 (22 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial large ribosomal subunit yml35 (50 kDa, Protein from Neurospora crassa OR74A)
- Rna (2820-mer) (1 MDa, RNA from Neurospora crassa OR74A)
- 54s ribosomal protein l31, mitochondrial (13 kDa, Protein from Neurospora crassa OR74A)
- Related to ribosomal protein l34, mitochondrial (14 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l3 (41 kDa, Protein from Neurospora crassa OR74A)
The structure of the mitoribosome from Neurospora crassa with tRNA bound to the E-site
Release date: Nov. 11, 2020
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6ywx
Q-score: 0.546
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6ywx
Q-score: 0.546
Itoh Y, Naschberger A, Mortezaei N, Herrmann JM, Amunts A
Nat Commun (2020) 11 pp. 5187-5187 [ Pubmed: 33056988 DOI: doi:10.1038/s41467-020-18830-w ]
Sample:
- Mitochondrial ribosomal protein subunit l23 (26 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l6 (28 kDa, Protein from Neurospora crassa OR74A)
- Ml50 (49 kDa, Protein from Neurospora crassa OR74A)
- 54s ribosomal protein l4, mitochondrial (29 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal protein (13 kDa, Protein from Neurospora crassa OR74A)
- Ms45 (39 kDa, Protein from Neurospora crassa OR74A)
- 50s ribosomal subunit protein l15 (33 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal_s7 domain-containing protein (33 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l16 (27 kDa, Protein from Neurospora crassa OR74A)
- Bl27m (49 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l1 (33 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial large ribosomal subunit (41 kDa, Protein from Neurospora crassa OR74A)
- Ms33 (12 kDa, Protein from Neurospora crassa OR74A)
- Mito ribosomal protein s6 (13 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l4, variant (36 kDa, Protein from Neurospora crassa OR74A)
- 37s ribosomal protein s24, mitochondrial (44 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial 60s ribosomal protein l25 (18 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial 37s ribosomal protein s17 (18 kDa, Protein from Neurospora crassa OR74A)
- Ms26 (35 kDa, Protein from Neurospora crassa OR74A)
- Ml41 (11 kDa, Protein from Neurospora crassa OR74A)
- 37s ribosomal protein s10, mitochondrial (30 kDa, Protein from Neurospora crassa OR74A)
- 50s ribosomal protein l17 (22 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal protein s15 (35 kDa, Protein from Neurospora crassa OR74A)
- Trna e-site (19 kDa, RNA from Neurospora crassa OR74A)
- Ribosomal protein s16, mitochondrial (12 kDa, Protein from Neurospora crassa OR74A)
- Potassium ion (39 Da, Ligand)
- 37s ribosomal protein s25, mitochondrial (29 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l20 (25 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein dap3 (51 kDa, Protein from Neurospora crassa OR74A)
- Ml49 (18 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein s19 (10 kDa, Protein from Neurospora crassa OR74A)
- Mito ribosomal protein s18 (28 kDa, Protein from Neurospora crassa OR74A)
- 37s ribosomal protein mrp10, mitochondrial (9 kDa, Protein from Neurospora crassa OR74A)
- Ul10m (37 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l19 (16 kDa, Protein from Neurospora crassa OR74A)
- 50s ribosomal protein l30 (18 kDa, Protein from Neurospora crassa OR74A)
- Aconitate hydratase (23 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial 40s ribosomal protein mrp2 (13 kDa, Protein from Neurospora crassa OR74A)
- 40s ribosomal protein s13 (13 kDa, Protein from Neurospora crassa OR74A)
- Ml67 (32 kDa, Protein from Neurospora crassa OR74A)
- 37s ribosomal protein s9, mitochondrial (35 kDa, Protein from Neurospora crassa OR74A)
- Duf1713 domain-containing protein (38 kDa, Protein from Neurospora crassa OR74A)
- 3-hydroxyisobutyryl-coa hydrolase, mitochondrial (56 kDa, Protein from Neurospora crassa OR74A)
- Igr domain-containing protein (26 kDa, Protein from Neurospora crassa OR74A)
- Mitoribosome of neurospora crassa with trna in the e-site (Complex from Neurospora crassa OR74A)
- Mito ribosomal protein s21 (25 kDa, Protein from Neurospora crassa OR74A)
- 23s rrna (1 MDa, RNA from Neurospora crassa OR74A)
- Mito ribosomal protein s4 (51 kDa, Protein from Neurospora crassa OR74A)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal subunit l30 (41 kDa, Protein from Neurospora crassa OR74A)
- Ml54 (23 kDa, Protein from Neurospora crassa OR74A)
- Bs1m (51 kDa, Protein from Neurospora crassa OR74A)
- If1 (10 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal_l9 domain-containing protein (33 kDa, Protein from Neurospora crassa OR74A)
- Kow domain-containing protein (45 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein l44 (11 kDa, Protein from Neurospora crassa OR74A)
- Mito ribosomal protein s2 (47 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein subunit s18 (42 kDa, Protein from Neurospora crassa OR74A)
- Ml40 (41 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein subunit l32 (14 kDa, Protein from Neurospora crassa OR74A)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- 50s ribosomal protein l14 (14 kDa, Protein from Neurospora crassa OR74A)
- 40s ribosomal protein s8 (17 kDa, Protein from Neurospora crassa OR74A)
- Rnase iii domain-containing protein (29 kDa, Protein from Neurospora crassa OR74A)
- Bl33m (7 kDa, Protein from Neurospora crassa OR74A)
- 37s ribosomal protein s5 (53 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial large ribosomal subunit yml35 (50 kDa, Protein from Neurospora crassa OR74A)
- Bl31m (23 kDa, Protein from Neurospora crassa OR74A)
- Spermine (202 Da, Ligand)
- 50s ribosomal protein l24 (31 kDa, Protein from Neurospora crassa OR74A)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l3 (41 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein (28 kDa, Protein from Neurospora crassa OR74A)
- Ms27 (44 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial ribosomal protein l43 (15 kDa, Protein from Neurospora crassa OR74A)
- Ms46 (43 kDa, Protein from Neurospora crassa OR74A)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ribosomal protein s5, mitochondrial (58 kDa, Protein from Neurospora crassa OR74A)
- 54s ribosomal protein l31, mitochondrial (13 kDa, Protein from Neurospora crassa OR74A)
- 16s rrna (600 kDa, RNA from Neurospora crassa OR74A)
- Fe superoxide dismutase (34 kDa, Protein from Neurospora crassa OR74A)
- 50s ribosomal protein l5 (39 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l2 (42 kDa, Protein from Neurospora crassa OR74A)
- Ribosomal protein l13 (20 kDa, Protein from Neurospora crassa OR74A)
- L51_s25_ci-b8 domain-containing protein (22 kDa, Protein from Neurospora crassa OR74A)
- Mitochondrial 30s ribosomal protein s12 (18 kDa, Protein from Neurospora crassa OR74A)
- Related to ribosomal protein l34, mitochondrial (14 kDa, Protein from Neurospora crassa OR74A)
- 60s ribosomal protein l3 (48 kDa, Protein from Neurospora crassa OR74A)
The structure of the mitoribosome from Neurospora crassa with bound tRNA at the P-site
Release date: Nov. 11, 2020
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 6ywy
Q-score: 0.56
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 6ywy
Q-score: 0.56
Itoh Y, Naschberger A, Mortezaei N, Herrmann JM, Amunts A
Nat Commun (2020) 11 pp. 5187-5187 [ Pubmed: 33056988 DOI: doi:10.1038/s41467-020-18830-w ]
Sample:
- 23s rrna (1 MDa, RNA from Neurospora crassa)
- Related to ribosomal protein s5 (mitochondrial) (53 kDa, Protein from Neurospora crassa)
- Ribosomal_s7 domain-containing protein (33 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml20, mitochondrial (25 kDa, Protein from Neurospora crassa)
- Ml50 (49 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l1, mitochondrial (33 kDa, Protein from Neurospora crassa)
- Kow domain-containing protein (45 kDa, Protein from Neurospora crassa)
- Ribosomal protein s19/s15 (10 kDa, Protein from Neurospora crassa)
- Mitochondrial ribosomal protein dap3 (51 kDa, Protein from Neurospora crassa)
- Ribosomal protein l14 (14 kDa, Protein from Neurospora crassa)
- Us9m (35 kDa, Protein from Neurospora crassa)
- Ul11m (16 kDa, Protein from Neurospora crassa)
- Ribosomal_l9 domain-containing protein (33 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l3, mitochondrial (41 kDa, Protein from Neurospora crassa)
- Ml41 (11 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml32 (mitochondrial) (14 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l2, mitochondrial (42 kDa, Protein from Neurospora crassa)
- Bl33m (7 kDa, Protein from Neurospora crassa)
- Ribosomal protein l15 (33 kDa, Protein from Neurospora crassa)
- Ms46 (43 kDa, Protein from Neurospora crassa)
- S4 rna-binding domain-containing protein (51 kDa, Protein from Neurospora crassa)
- Us8m (17 kDa, Protein from Neurospora crassa)
- Bl19m (28 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l4, variant (36 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l34, mitochondrial (14 kDa, Protein from Neurospora crassa)
- Ml67 (32 kDa, Protein from Neurospora crassa)
- P-site-trna (23 kDa, RNA from Neurospora crassa)
- 37s ribosomal protein s25, mitochondrial (29 kDa, Protein from Neurospora crassa)
- Rnase iii domain-containing protein (29 kDa, Protein from Neurospora crassa)
- Ribosomal protein s12 (18 kDa, Protein from Neurospora crassa)
- 37s ribosomal protein s24, mitochondrial (44 kDa, Protein from Neurospora crassa)
- Potassium ion (39 Da, Ligand)
- Related to ribosomal protein yml49, mitochondrial (23 kDa, Protein from Neurospora crassa)
- Duf1713 domain-containing protein (38 kDa, Protein from Neurospora crassa)
- Mrna (3 kDa, RNA from Neurospora crassa)
- Ml40 (41 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml11, mitochondrial (37 kDa, Protein from Neurospora crassa)
- Probable ribosomal protein yml44, mitochondrial (11 kDa, Protein from Neurospora crassa)
- Ribosomal protein s6 (13 kDa, Protein from Neurospora crassa)
- Mitochondrial large ribosomal subunit (41 kDa, Protein from Neurospora crassa)
- Ml54 (23 kDa, Protein from Neurospora crassa)
- Ul23m (26 kDa, Protein from Neurospora crassa)
- Ms45 (39 kDa, Protein from Neurospora crassa)
- Probable ribosomal protein s13 (13 kDa, Protein from Neurospora crassa)
- Translational machinery component (42 kDa, Protein from Neurospora crassa)
- 30s ribosomal protein s10, mitochondrial (30 kDa, Protein from Neurospora crassa)
- Bs16m (12 kDa, Protein from Neurospora crassa)
- Pebp-like protein (50 kDa, Protein from Neurospora crassa)
- Ms27 (44 kDa, Protein from Neurospora crassa)
- Us17m (18 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l30 (18 kDa, Protein from Neurospora crassa)
- Magnesium ion (24 Da, Ligand)
- L51_s25_ci-b8 domain-containing protein (22 kDa, Protein from Neurospora crassa)
- 54s ribosomal protein l31, mitochondrial (13 kDa, Protein from Neurospora crassa)
- Ul17m (22 kDa, Protein from Neurospora crassa)
- Ul13m (20 kDa, Protein from Neurospora crassa)
- Ribosomal protein (13 kDa, Protein from Neurospora crassa)
- Ml49 (18 kDa, Protein from Neurospora crassa)
- Mitoribosome of neurospora crassa in the trna bound state (p-site). (Complex from Neurospora crassa)
- Bl28m (31 kDa, Protein from Neurospora crassa)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Ribosomal protein s18 (28 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml36, mitochondrial (23 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l16, mitochondrial (27 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l5, mitochondrial (39 kDa, Protein from Neurospora crassa)
- Bs21m (25 kDa, Protein from Neurospora crassa)
- L51_s25_ci-b8 domain-containing protein (15 kDa, Protein from Neurospora crassa)
- Poly-peptide (515 Da, Protein from Neurospora crassa)
- 16s rrna (600 kDa, RNA from Neurospora crassa)
- Ms26 (35 kDa, Protein from Neurospora crassa)
- Spermine (202 Da, Ligand)
- Mitochondrial 37s ribosomal protein mrp2 (13 kDa, Protein from Neurospora crassa)
- Related to 60s ribosomal protein l2 (mitochondrial) (49 kDa, Protein from Neurospora crassa)
- 37s ribosomal protein mrp10, mitochondrial (9 kDa, Protein from Neurospora crassa)
- 3-hydroxyisobutyryl-coa hydrolase, mitochondrial (56 kDa, Protein from Neurospora crassa)
- Ribonuclease iii (48 kDa, Protein from Neurospora crassa)
- Zinc ion (65 Da, Ligand)
- Mitoc_ml59 domain-containing protein (18 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein s15 (mitochondrial) (35 kDa, Protein from Neurospora crassa)
- Ml46 (41 kDa, Protein from Neurospora crassa)
- Ul6m (28 kDa, Protein from Neurospora crassa)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- If1 (10 kDa, Protein from Neurospora crassa)
- Mito ribosomal protein s2 (47 kDa, Protein from Neurospora crassa)
- Protein fyv4, mitochondrial (26 kDa, Protein from Neurospora crassa)
- Ribosomal protein s5 (58 kDa, Protein from Neurospora crassa)
- Manganese and iron superoxide dismutase (34 kDa, Protein from Neurospora crassa)
- 54s ribosomal protein l4, mitochondrial (29 kDa, Protein from Neurospora crassa)
- Ms33 (12 kDa, Protein from Neurospora crassa)
- Bs1m (51 kDa, Protein from Neurospora crassa)
State A of the Trypanosoma brucei mitoribosomal large subunit assembly intermediate
Release date: Oct. 14, 2020
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6yxx
Q-score: 0.389
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6yxx
Q-score: 0.389
Jaskolowski M, Ramrath DJF, Bieri P, Niemann M, Mattei S, Calderaro S, Leibundgut M, Horn EK, Boehringer D, Schneider A, Ban N
Mol Cell (2020) 79 pp. 629-644.e4 [ DOI: doi:10.1016/j.molcel.2020.06.030 Pubmed: 32679035 ]
Sample:
- Bl20m (24 kDa, Protein from Trypanosoma brucei brucei)
- Unk (20 kDa, Protein from Trypanosoma brucei brucei)
- Ml93 (18 kDa, Protein from Trypanosoma brucei brucei)
- Unk (7 kDa, Protein from Trypanosoma brucei brucei)
- Mt-enga (65 kDa, Protein from Trypanosoma brucei brucei)
- Bl21m (20 kDa, Protein from Trypanosoma brucei brucei)
- Duf4379 domain-containing protein (63 kDa, Protein from Trypanosoma brucei brucei)
- Tetratricopeptide repeat (49 kDa, Protein from Trypanosoma brucei brucei)
- Peptidyl-prolyl cis-trans isomerase (20 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf14 (82 kDa, Protein from Trypanosoma brucei brucei)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Mt-laf27 (11 kDa, Protein from Trypanosoma brucei brucei)
- Lipase (class 3) (58 kDa, Protein from Trypanosoma brucei brucei)
- Ml80 (34 kDa, Protein from Trypanosoma brucei brucei)
- Bl32m (9 kDa, Protein from Trypanosoma brucei brucei)
- Bl28m (28 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf25 (32 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l11, putative (40 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf29 (38 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf21 (56 kDa, Protein from Trypanosoma brucei brucei)
- Ml87 (22 kDa, Protein from Trypanosoma brucei brucei)
- Ml71 (50 kDa, Protein from Trypanosoma brucei brucei)
- Ml78 (35 kDa, Protein from Trypanosoma brucei brucei)
- Gtp-binding protein, putative (50 kDa, Protein from Trypanosoma brucei brucei)
- Ml84 (24 kDa, Protein from Trypanosoma brucei brucei)
- Pseudouridylate synthase, putative (46 kDa, Protein from Trypanosoma brucei brucei)
- Ml81 (29 kDa, Protein from Trypanosoma brucei brucei)
- State b of the trypanosoma brucei mitoribosomal large subunit assembly intermediate (Complex from Trypanosoma brucei brucei)
- Ml64 (28 kDa, Protein from Trypanosoma brucei brucei)
- Ml68 (62 kDa, Protein from Trypanosoma brucei brucei)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Ml67 (93 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l3 mitochondrial, putative (55 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal protein l4/l1 family, putative (53 kDa, Protein from Trypanosoma brucei brucei)
- Ml63 (18 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf24 (49 kDa, Protein from Trypanosoma brucei brucei)
- Ml74 (39 kDa, Protein from Trypanosoma brucei brucei)
- Ml42 (21 kDa, Protein from Trypanosoma brucei brucei)
- Unk (2 kDa, Protein from Trypanosoma brucei brucei)
- Ul30m (25 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf4 (69 kDa, Protein from Trypanosoma brucei brucei)
- 50s ribosomal protein l17, putative (35 kDa, Protein from Trypanosoma brucei brucei)
- L51_s25_ci-b8 domain-containing protein (31 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf23 (63 kDa, Protein from Trypanosoma brucei brucei)
- Unk (2 kDa, Protein from Trypanosoma brucei brucei)
- Spou_methylase domain-containing protein (67 kDa, Protein from Trypanosoma brucei brucei)
- Unk (2 kDa, Protein from Trypanosoma brucei brucei)
- Ul23m (28 kDa, Protein from Trypanosoma brucei brucei)
- Ml52 (167 kDa, Protein from Trypanosoma brucei brucei)
- Ml75 (39 kDa, Protein from Trypanosoma brucei brucei)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Kripp9 (89 kDa, Protein from Trypanosoma brucei brucei)
- Ml49 (24 kDa, Protein from Trypanosoma brucei brucei)
- Ml98 (12 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf7 (18 kDa, Protein from Trypanosoma brucei brucei)
- Sodium ion (22 Da, Ligand)
- Ribosomal_l9 domain-containing protein (30 kDa, Protein from Trypanosoma brucei brucei)
- Spou_methylase domain-containing protein (40 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf19 (12 kDa, Protein from Trypanosoma brucei brucei)
- Ul24m (43 kDa, Protein from Trypanosoma brucei brucei)
- Unk (869 Da, Protein from Trypanosoma brucei brucei)
- Zinc ion (65 Da, Ligand)
- Ml88 (22 kDa, Protein from Trypanosoma brucei brucei)
- Ml89 (22 kDa, Protein from Trypanosoma brucei brucei)
- S-(2-{[n-(2-hydroxy-4-{[hydroxy(oxido)phosphino]oxy}-3,3-dimethylbutanoyl)-beta-alanyl]amino}ethyl) decanethioate (496 Da, Ligand)
- Bl35m (21 kDa, Protein from Trypanosoma brucei brucei)
- Ml76 (39 kDa, Protein from Trypanosoma brucei brucei)
- Water (18 Da, Ligand)
- Mt-laf15a (34 kDa, Protein from Trypanosoma brucei brucei)
- Ml85 (22 kDa, Protein from Trypanosoma brucei brucei)
- Mt-laf8 (68 kDa, Protein from Trypanosoma brucei brucei)
- Ribosomal_l18e/l15p domain-containing protein (43 kDa, Protein from Trypanosoma brucei brucei)
- Ml53 (35 kDa, Protein from Trypanosoma brucei brucei)
- Ml95 (17 kDa, Protein from Trypanosoma brucei brucei)
- Magnesium ion (24 Da, Ligand)
- Peptidyl-prolyl cis-trans isomerase (25 kDa, Protein from Trypanosoma brucei brucei)
- Bl19m (16 kDa, Protein from Trypanosoma brucei brucei)
- Ml70 (62 kDa, Protein from Trypanosoma brucei brucei)
- Ml41 (22 kDa, Protein from Trypanosoma brucei brucei)
- Ul22m (32 kDa, Protein from Trypanosoma brucei brucei)
- Ul29m (54 kDa, Protein from Trypanosoma brucei brucei)
- Acyl carrier protein (16 kDa, Protein from Trypanosoma brucei brucei)
- 50s ribosomal protein l13, putative (24 kDa, Protein from Trypanosoma brucei brucei)
- Unk (698 Da, Protein from Trypanosoma brucei brucei)
- Ml86 (22 kDa, Protein from Trypanosoma brucei brucei)
- Ml94 (17 kDa, Protein from Trypanosoma brucei brucei)
- Kripp3 (58 kDa, Protein from Trypanosoma brucei brucei)
- Unk (1 kDa, Protein from Trypanosoma brucei brucei)
- Chaperone protein dnaj, putative (43 kDa, Protein from Trypanosoma brucei brucei)
- Dead-box helicase, putative (85 kDa, Protein from Trypanosoma brucei brucei)
- Unk (6 kDa, Protein from Trypanosoma brucei brucei)
- 12s ribosomal rna (365 kDa, RNA from Trypanosoma brucei brucei)
- Mt-laf12 (77 kDa, Protein from Trypanosoma brucei brucei)