Empty capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Bardy P, MacDonald CIW, Kirchberger PC, Jenkins HT, Botka T, Byrom L, Alim NTB, Traore DAK, Konig HC, Nicholas TR, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Beatty JT, Fogg PCM, Antson AA
To Be Published
- Major capsid protein (55 kDa, Protein from Rhodobacter capsulatus)
- Rhodobacter phage ebor (3 MDa, Virus from Rhodobacter phage Ebor)
Native capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Bardy P, MacDonald CIW, Kirchberger PC, Jenkins HT, Botka T, Byrom L, Alim NTB, Traore DAK, Konig HC, Nicholas TR, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Beatty JT, Fogg PCM, Antson AA
To Be Published
- Major capsid protein (55 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Rhodobacter phage ebor (5 MDa, Virus from Rhodobacter phage Ebor)
Human cytomegalovirus portal vertex, virion configuration 1 (VC1)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8tep
Q-score: 0.374
Sci Adv (2024) 10 pp. eadj1640-eadj1640 [ DOI: doi:10.1126/sciadv.adj1640 Pubmed: 38394211 ]
- Human herpesvirus 5 strain ad169 (Virus from Human herpesvirus 5 strain AD169)
- Large tegument protein deneddylase (253 kDa, Protein from Human herpesvirus 5 strain AD169)
- Inner tegument protein (110 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 1 (33 kDa, Protein from Human herpesvirus 5 strain AD169)
- Small capsomere-interacting protein (8 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 2 (71 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large structural phosphoprotein (112 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 1 (68 kDa, Protein from Human herpesvirus 5 strain AD169)
- Major capsid protein (154 kDa, Protein from Human herpesvirus 5 strain AD169)
Human cytomegalovirus portal vertex, virion configuration 2 (VC2)
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 8tes
Q-score: 0.567
Sci Adv (2024) 10 pp. eadj1640-eadj1640 [ Pubmed: 38394211 DOI: doi:10.1126/sciadv.adj1640 ]
- Triplex capsid protein 1 (33 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large tegument protein deneddylase (253 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large structural phosphoprotein (112 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 2 (71 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 1 (68 kDa, Protein from Human herpesvirus 5 strain AD169)
- Human herpesvirus 5 strain ad169 (Virus from Human herpesvirus 5 strain AD169)
- Small capsomere-interacting protein (8 kDa, Protein from Human herpesvirus 5 strain AD169)
- Major capsid protein (154 kDa, Protein from Human herpesvirus 5 strain AD169)
Human cytomegalovirus portal vertex, non-infectious enveloped particle (NIEP) configuration 1 (NC1)
Resolution: 4.26 Å
EM Method: Single-particle
Fitted PDBs: 8tet
Q-score: 0.461
Sci Adv (2024) 10 pp. eadj1640-eadj1640 [ Pubmed: 38394211 DOI: doi:10.1126/sciadv.adj1640 ]
- Triplex capsid protein 1 (33 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large tegument protein deneddylase (253 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large structural phosphoprotein (112 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 2 (71 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 1 (68 kDa, Protein from Human herpesvirus 5 strain AD169)
- Human herpesvirus 5 strain ad169 (Virus from Human herpesvirus 5 strain AD169)
- Small capsomere-interacting protein (8 kDa, Protein from Human herpesvirus 5 strain AD169)
- Major capsid protein (154 kDa, Protein from Human herpesvirus 5 strain AD169)
Resolution: 4.01 Å
EM Method: Single-particle
Fitted PDBs: 8teu
Q-score: 0.43
Sci Adv (2024) 10 pp. eadj1640-eadj1640 [ DOI: doi:10.1126/sciadv.adj1640 Pubmed: 38394211 ]
- Human herpesvirus 5 strain ad169 (Virus from Human herpesvirus 5 strain AD169)
- Large tegument protein deneddylase (253 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 1 (33 kDa, Protein from Human herpesvirus 5 strain AD169)
- Small capsomere-interacting protein (8 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 2 (71 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large structural phosphoprotein (112 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 1 (68 kDa, Protein from Human herpesvirus 5 strain AD169)
- Major capsid protein (154 kDa, Protein from Human herpesvirus 5 strain AD169)
Human cytomegalovirus penton vertex, CVSC-bound configuration
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 8tew
Q-score: 0.544
Sci Adv (2024) 10 pp. eadj1640-eadj1640 [ DOI: doi:10.1126/sciadv.adj1640 Pubmed: 38394211 ]
- Human herpesvirus 5 strain ad169 (Virus from Human herpesvirus 5 strain AD169)
- Large tegument protein deneddylase (253 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 1 (33 kDa, Protein from Human herpesvirus 5 strain AD169)
- Small capsomere-interacting protein (8 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 2 (71 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large structural phosphoprotein (112 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 1 (68 kDa, Protein from Human herpesvirus 5 strain AD169)
- Major capsid protein (154 kDa, Protein from Human herpesvirus 5 strain AD169)
Zophobas morio black wasting virus strain NJ2-molitor virion structure
Resolution: 2.0 Å
EM Method: Single-particle
Fitted PDBs: 8t9x
Q-score: 0.736
Penzes JJ, Holm M, Firlar E, Kaelber JT
To Be Published
- Dna (5'-d(p*cp*gp*a)-3') (886 Da, DNA from Zophobas morio black wasting virus)
- Major capsid protein (48 kDa, Protein from Zophobas morio black wasting virus)
- Zophobas morio densovirus (Virus from Zophobas morio densovirus)
- Dna (5'-d(p*tp*cp*gp*ap*a)-3') (1 kDa, DNA from Zophobas morio black wasting virus)
- Water (18 Da, Ligand)
- Dna (5'-d(p*cp*ap*gp*gp*cp*cp*ap*ap*a)-3') (2 kDa, DNA from Zophobas morio black wasting virus)
Structure of neck and portal vertex of Agrobacterium phage Milano, C5 symmetry
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 8fwg
Q-score: 0.491
Sonani RR, Esteves NC, Horton AA, Kelly RJ, Sebastian AL, Wang F, Kreutzberger MAB, Leiman PG, Scharf BE, Egelman EH
Commun Biol (2023) 6 pp. 921-921 [ DOI: doi:10.1038/s42003-023-05292-1 Pubmed: 37684529 ]
- Linking protein 2, gp128 (3 kDa, Protein from Agrobacterium phage Milano)
- Minor capsid protein, gp10 (14 kDa, Protein from Agrobacterium phage Milano)
- Agrobacterium phage milano (Virus from Agrobacterium phage Milano)
- Linking protein 1, gp16 (22 kDa, Protein from Agrobacterium phage Milano)
- Collar sheath protein, gp13 (24 kDa, Protein from Agrobacterium phage Milano)
- Major capsid protein, gp9 (52 kDa, Protein from Agrobacterium phage Milano)
- Neck 1 protein, gp14 (22 kDa, Protein from Agrobacterium phage Milano)
Structure of neck with portal vertex of capsid of Agrobacterium phage Milano
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 8fxr
Q-score: 0.302
Sonani RR, Esteves NC, Horton AA, Kelly RJ, Sebastian AL, Wang F, Kreutzberger MAB, Leiman PG, Scharf BE, Egelman EH
Commun Biol (2023) 6 pp. 921-921 [ Pubmed: 37684529 DOI: doi:10.1038/s42003-023-05292-1 ]
- Linking protein 1, gp16 (22 kDa, Protein from Agrobacterium phage Milano)
- Tail-tube, gp21 (14 kDa, Protein from Agrobacterium phage Milano)
- Agrobacterium phage milano (Virus from Agrobacterium phage Milano)
- Neck 1 protein, gp14 (22 kDa, Protein from Agrobacterium phage Milano)
- Neck 2 protein, gp15 (16 kDa, Protein from Agrobacterium phage Milano)
- Portal protein, gp7 (45 kDa, Protein from Agrobacterium phage Milano)
- Linking protein 2, gp128 (3 kDa, Protein from Agrobacterium phage Milano)
- Tail-terminator protein, gp18 (20 kDa, Protein from Agrobacterium phage Milano)
- Collar sheath protein, gp13 (24 kDa, Protein from Agrobacterium phage Milano)
- Major capsid protein, gp9 (52 kDa, Protein from Agrobacterium phage Milano)
- Minor capsid protein, gp10 (14 kDa, Protein from Agrobacterium phage Milano)