Capsid structure of the L-A helper virus from native viral communities
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 8pe4
Q-score: 0.453
Schmidt L, Tuting C, Kyrilis FL, Hamdi F, Semchonok DA, Hause G, Meister A, Ihling C, Stubbs MT, Sinz A, Kastritis PL
Commun Biol (2024) 7 pp. 557-557 [ Pubmed: 38730276 DOI: doi:10.1038/s42003-024-06204-7 ]
SaPI1 mature capsid structure without DNA
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8vd5
Q-score: 0.54
Mukherjee A, Kizziah JL, Hawkins NC, Nasef MO, Parker LK, Dokland T
J Mol Biol (2023) 436 pp. 168415-168415 [ Pubmed: 38135177 DOI: doi:10.1016/j.jmb.2023.168415 ]
- Major capsid protein (36 kDa, Protein from Dubowvirus dv80alpha)
- Dubowvirus dv80alpha (Virus from Dubowvirus dv80alpha)
Capsid structure of the L-A helper virus from native viral communities
Resolution: 3.78 Å
EM Method: Single-particle
Fitted PDBs: 8a5t
Q-score: 0.397
Schmidt L, Tuting C, Kyrilis FL, Hamdi F, Semchonok DA, Hause G, Meister A, Ihling C, Stubbs MT, Sinz A, Kastritis PL
Commun Biol (2024) 7 pp. 557-557 [ Pubmed: 38730276 DOI: doi:10.1038/s42003-024-06204-7 ]
Resolution: 12.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 8rbt
Q-score: 0.097
Homola M, Buttner CR, Fuzik T, Krepelka P, Holbova R, Novacek J, Chaillet ML, Zak J, Grybchuk D, Forster F, Wilson WH, Schroeder DC, Plevka P
Sci Adv (2024) 10 pp. eadk1954-eadk1954 [ Pubmed: 38598627 DOI: doi:10.1126/sciadv.adk1954 ]
- Major capsid protein (55 kDa, Protein from Emiliania huxleyi virus 201)
- Emiliania huxleyi virus 201 (Virus from Emiliania huxleyi virus 201)
- Penton protein (72 kDa, Protein from Emiliania huxleyi virus 201)
C5 portal vertex in HCMV B-capsid
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8hex
Q-score: 0.283
Li Z, Pang J, Gao R, Wang Q, Zhang M, Yu X
Nat Commun (2023) 14 pp. 2025-2025 [ DOI: doi:10.1038/s41467-023-37779-0 Pubmed: 37041152 ]
- Major capsid protein (154 kDa, Protein from Human betaherpesvirus 5)
- Capsid vertex component 1 (68 kDa, Protein from Human betaherpesvirus 5)
- Portal protein (3 kDa, Protein from Human betaherpesvirus 5)
- Small capsomere-interacting protein (8 kDa, Protein from Human betaherpesvirus 5)
- Triplex capsid protein 2 (34 kDa, Protein from Human betaherpesvirus 5)
- Portal protein (1 kDa, Protein from Human betaherpesvirus 5)
- Triplex capsid protein 1 (33 kDa, Protein from Human betaherpesvirus 5)
- Portal protein (1 kDa, Protein from Human betaherpesvirus 5)
- Human betaherpesvirus 5 (Virus from Human betaherpesvirus 5)
- Capsid vertex component 2 (71 kDa, Protein from Human betaherpesvirus 5)
One CVSC-binding penton vertex in HCMV B-capsid
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 8hey
Q-score: 0.392
Li Z, Pang J, Gao R, Wang Q, Zhang M, Yu X
Nat Commun (2023) 14 pp. 2025-2025 [ DOI: doi:10.1038/s41467-023-37779-0 Pubmed: 37041152 ]
- Human betaherpesvirus 5 (Virus from Human betaherpesvirus 5)
- Triplex capsid protein 2 (34 kDa, Protein from Human betaherpesvirus 5)
- Major capsid protein (154 kDa, Protein from Human betaherpesvirus 5)
- Small capsomere-interacting protein (8 kDa, Protein from Human betaherpesvirus 5)
- Triplex capsid protein 1 (33 kDa, Protein from Human betaherpesvirus 5)
- Capsid vertex component 1 (68 kDa, Protein from Human betaherpesvirus 5)
- Capsid vertex component 2 (71 kDa, Protein from Human betaherpesvirus 5)
One asymmetric unit of Singapore grouper iridovirus capsid
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8hif
Q-score: 0.491
Zhao Z, Huang Y, Liu C, Zhu D, Gao S, Liu S, Peng R, Zhang Y, Huang X, Qi J, Wong CCL, Zhang X, Wang P, Qin Q, Gao GF
Nat Commun (2023) 14 pp. 2050-2050 [ DOI: doi:10.1038/s41467-023-37681-9 Pubmed: 37041173 ]
- Singapore grouper iridovirus (Virus from Singapore grouper iridovirus)
- Penton protein (vp14) (15 kDa, Protein from Singapore grouper iridovirus)
- Vp38 (19 kDa, Protein from Singapore grouper iridovirus)
- Vp137 (49 kDa, Protein from Singapore grouper iridovirus)
- Vp88 (54 kDa, Protein from Singapore grouper iridovirus)
- Vp139 (11 kDa, Protein from Singapore grouper iridovirus)
- Major capsid protein (50 kDa, Protein from Singapore grouper iridovirus)
- Vp59 (16 kDa, Protein from Singapore grouper iridovirus)
Unique vertex of the phicrAss001 virion
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 7qoi
Q-score: 0.505
Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA
Nature (2023) 617 pp. 409-416 [ Pubmed: 37138077 DOI: doi:10.1038/s41586-023-06019-2 ]
- Ring protein 2 gp40 (26 kDa, Protein from Bacteroides phage crAss001)
- Portal vertex capsid protein gp57 (11 kDa, Protein from Bacteroides phage crAss001)
- Ring protein 1 gp43 (27 kDa, Protein from Bacteroides phage crAss001)
- Magnesium ion (24 Da, Ligand)
- Major capsid protein gp32 (57 kDa, Protein from Bacteroides phage crAss001)
- Head fiber trimer protein gp21 (10 kDa, Protein from Bacteroides phage crAss001)
- Auxiliary capsid protein gp36 (36 kDa, Protein from Bacteroides phage crAss001)
- Bacteroides phage crass001 (Virus from Bacteroides phage crAss001)
- Cargo protein 1 gp45 (90 kDa, Protein from Bacteroides phage crAss001)
- Portal protein gp20 (93 kDa, Protein from Bacteroides phage crAss001)
Saccharomyces cerevisiae L-BC virus, open particle, asymmetric reconstruction
Resolution: 16.0 Å
EM Method: Single-particle
Fitted PDBs: 7zts
Q-score: 0.051
Grybchuk D, Prochazkova M, Fuzik T, Konovalovas A, Serva S, Yurchenko V, Plevka P
Commun Biol (2022) 5 pp. 847-847 [ DOI: doi:10.1038/s42003-022-03793-z Pubmed: 35986212 ]
Empty capsid of Saccharomyces cerevisiae virus L-BCLa
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7qwx
Q-score: 0.551
Grybchuk D, Prochazkova M, Fuzik T, Konovalovas A, Serva S, Yurchenko V, Plevka P
Commun Biol (2022) 5 pp. 847-847 [ Pubmed: 35986212 DOI: doi:10.1038/s42003-022-03793-z ]