Cryo-EM structure of the marine siphophage vB_Dshs-R4C capsid
Resolution: 3.63 Å
EM Method: Single-particle
Fitted PDBs: 8gta
Q-score: 0.475
Cryo-EM structure of pseudorabies virus C-capsid
Resolution: 4.43 Å
EM Method: Single-particle
Fitted PDBs: 7fj1
Q-score: 0.142
Wang G, Zha Z, Huang P, Sun H, Huang Y, He M, Chen T, Lin L, Chen Z, Kong Z, Que Y, Li T, Gu Y, Yu H, Zhang J, Zheng Q, Chen Y, Li S, Xia N
Nat Commun (2022) 13 pp. 1533-1533 [ Pubmed: 35318331 DOI: doi:10.1038/s41467-022-29250-3 ]
- Capsid vertex component 1 (64 kDa, Protein from Suid alphaherpesvirus 1)
- Triplex capsid protein 1 (40 kDa, Protein from Suid alphaherpesvirus 1)
- Vp1/2 (7 kDa, Protein from Suid alphaherpesvirus 1)
- Suid alphaherpesvirus 1 (Virus from Suid alphaherpesvirus 1)
- Small capsomere-interacting protein (11 kDa, Protein from Suid alphaherpesvirus 1)
- Major capsid protein (146 kDa, Protein from Suid alphaherpesvirus 1)
- Triplex capsid protein 2 (31 kDa, Protein from Suid alphaherpesvirus 1)
- Dna packaging tegument protein ul25 (57 kDa, Protein from Suid alphaherpesvirus 1)
Cryo-EM structure of PRV A-capid
Resolution: 4.53 Å
EM Method: Single-particle
Fitted PDBs: 7fj3
Q-score: 0.023
Wang G, Zha Z, Huang P, Sun H, Huang Y, He M, Chen T, Lin L, Chen Z, Kong Z, Que Y, Li T, Gu Y, Yu H, Zhang J, Zheng Q, Chen Y, Li S, Xia N
Nat Commun (2022) 13 pp. 1533-1533 [ Pubmed: 35318331 DOI: doi:10.1038/s41467-022-29250-3 ]
- Triplex capsid protein 1 (40 kDa, Protein from Suid alphaherpesvirus 1)
- Suid alphaherpesvirus 1 (Virus from Suid alphaherpesvirus 1)
- Small capsomere-interacting protein (11 kDa, Protein from Suid alphaherpesvirus 1)
- Major capsid protein (146 kDa, Protein from Suid alphaherpesvirus 1)
- Triplex capsid protein 2 (31 kDa, Protein from Suid alphaherpesvirus 1)
The atomic structure of varicella-zoster virus A-capsid
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6lgl
Q-score: 0.114
Wang W, Zheng Q, Pan D, Yu H, Fu W, Liu J, He M, Zhu R, Cai Y, Huang Y, Zha Z, Chen Z, Ye X, Han J, Que Y, Wu T, Zhang J, Li S, Zhu H, Zhou ZH, Cheng T, Xia N
Nat Microbiol (2020) 5 pp. 1542-1552 [ DOI: doi:10.1038/s41564-020-0785-y Pubmed: 32895526 ]
- Triplex capsid protein 1 (54 kDa, Protein from Human herpesvirus 3)
- Human alphaherpesvirus 3 (Virus from Human alphaherpesvirus 3)
- Major capsid protein (155 kDa, Protein from Human herpesvirus 3)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 3)
- Small capsomere-interacting protein (24 kDa, Protein from Human herpesvirus 3)
The atomic structure of varicella zoster virus C-capsid
Wang W, Zheng Q, Pan D, Yu H, Fu W, Liu J, He M, Zhu R, Cai Y, Huang Y, Zha Z, Chen Z, Ye X, Han J, Que Y, Wu T, Zhang J, Li S, Zhu H, Zhou ZH, Cheng T, Xia N
Nat Microbiol (2020) 5 pp. 1542-1552 [ DOI: doi:10.1038/s41564-020-0785-y Pubmed: 32895526 ]
- Triplex capsid protein 1 (54 kDa, Protein from Human herpesvirus 3)
- Human alphaherpesvirus 3 (Virus from Human alphaherpesvirus 3)
- Major capsid protein (155 kDa, Protein from Human herpesvirus 3)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 3)
- Small capsomere-interacting protein (24 kDa, Protein from Human herpesvirus 3)
Near-atomic structure of icosahedrally averaged PBCV-1 capsid
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6ncl
Q-score: 0.426
Fang Q, Zhu D, Agarkova I, Adhikari J, Klose T, Liu Y, Chen Z, Sun Y, Gross ML, Van Etten JL, Zhang X, Rossmann MG
Nat Commun (2019) 10 pp. 388-388 [ Pubmed: 30674888 DOI: doi:10.1038/s41467-019-08319-6 ]
- P13 (11 kDa, Protein from PBCV-1)
- P3 (19 kDa, Protein from PBCV-1)
- P1 (18 kDa, Protein from PBCV-1)
- P8 (19 kDa, Protein from PBCV-1)
- P7 (29 kDa, Protein from PBCV-1)
- P4 (20 kDa, Protein from PBCV-1)
- P6 (24 kDa, Protein from PBCV-1)
- Major capsid protein (48 kDa, Protein from PBCV-1)
- Paramecium bursaria chlorella virus 1 (Virus from Paramecium bursaria Chlorella virus 1)
- P10 (31 kDa, Protein from PBCV-1)
- P11 (23 kDa, Protein from PBCV-1)
- P14 (38 kDa, Protein from PBCV-1)
- P12 (17 kDa, Protein from PBCV-1)
- P2 (63 kDa, Protein from PBCV-1)
- P5 (16 kDa, Protein from PBCV-1)
- P9 (23 kDa, Protein from PBCV-1)
Cryo-EM reconstruction of the bacteriophage T4 isometric capsid
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 5vf3
Q-score: 0.505
Chen Z, Sun L, Zhang Z, Fokine A, Padilla-Sanchez V, Hanein D, Jiang W, Rossmann MG, Rao VB
PNAS (2017) 114 pp. E8184-E8193 [ Pubmed: 28893988 DOI: doi:10.1073/pnas.1708483114 ]
- Major capsid protein (48 kDa, Protein from Enterobacteria phage T4)
- Highly immunogenic outer capsid protein (1 kDa, Protein from Enterobacteria phage T4)
- Small outer capsid protein (9 kDa, Protein from Enterobacteria phage T4)
- Highly immunogenic outer capsid protein (40 kDa, Protein from Enterobacteria phage T4)
- Enterobacteria phage t4 (Virus from Enterobacteria phage T4)
- Capsid vertex protein gp24 (45 kDa, Protein from Enterobacteria phage T4)