Capsid of empty GTA particle computed with C5 symmetry
Resolution: 3.42 Å
EM Method: Single-particle
Fitted PDBs: 6tsu
Q-score: 0.532
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ DOI: doi:10.1038/s41467-020-16669-9 Pubmed: 32541663 ]
- Rhodobacter capsulatus de442 gene transfer agent capsid (80 kDa, Complex from Rhodobacter capsulatus DE442)
- Uncharacterized protein (32 kDa, Protein from Rhodobacter capsulatus DE442)
- Head spike (Complex from Rhodobacter capsulatus DE442)
- Major capsid protein rcc01687 (40 kDa, Protein from Rhodobacter capsulatus DE442)
- Uncharacterized protein (9 kDa, Protein from Rhodobacter capsulatus DE442)
Capsid of native GTA particle computed with C5 symmetry
Resolution: 3.56 Å
EM Method: Single-particle
Fitted PDBs: 6tb9
Q-score: 0.496
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ Pubmed: 32541663 DOI: doi:10.1038/s41467-020-16669-9 ]
- Head spike fiber rcc01080 (32 kDa, Protein from Rhodobacter capsulatus)
- Major capsid protein rcc01687 (40 kDa, Protein from Rhodobacter capsulatus)
- Head spike base rcc01079 (9 kDa, Protein from Rhodobacter capsulatus)
- Rhodobacter capsulatus de442 gene transfer agent capsid (80 kDa, Complex from Rhodobacter capsulatus)
- Head spike (Complex from Rhodobacter capsulatus)
Virion of native gene transfer agent (GTA) particle
Resolution: 4.54 Å
EM Method: Single-particle
Fitted PDBs: 6tba
Q-score: 0.472
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ Pubmed: 32541663 DOI: doi:10.1038/s41467-020-16669-9 ]
- Iron/sulfur cluster (351 Da, Ligand)
- Baseplate (Complex from Rhodobacter capsulatus SB 1003)
- Phage major capsid protein, hk97 family (40 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (20 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Phage major tail protein, tp901-1 family (14 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Portal protein rcc01684 (42 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (32 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Connector (Complex from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (13 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (12 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (22 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Head spike (Complex from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (138 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (31 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (9 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Capsid (Complex from Rhodobacter capsulatus SB 1003)
- Rhodobacter capsulatus sb 1003 (880 kDa, Virus from Rhodobacter capsulatus SB 1003)
- Tail (Complex from Rhodobacter capsulatus SB 1003)
Isometric capsid of empty GTA particle computed with I4(I,n25r) symmetry
Resolution: 4.03 Å
EM Method: Single-particle
Fitted PDBs: 6tsw
Q-score: 0.434
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ DOI: doi:10.1038/s41467-020-16669-9 Pubmed: 32541663 ]
Capsid-neck interface of native GTA particle, asymmetric reconstruction
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ Pubmed: 32541663 DOI: doi:10.1038/s41467-020-16669-9 ]
- Head spike fiber rcc01080 (Protein from Rhodobacter capsulatus DE442)
- Adaptor protein rcc01688 (Protein from Rhodobacter capsulatus DE442)
- Head spike (Complex from Rhodobacter capsulatus DE442)
- Rhodobacter capsulatus de442 gene transfer agent (880 kDa, Complex from Rhodobacter capsulatus DE442)
- Major capsid protein rcc01687 (Protein from Rhodobacter capsulatus DE442)
- Head spike base rcc01079 (Protein from Rhodobacter capsulatus DE442)
- Connector (Complex from Rhodobacter capsulatus DE442)
- Tail terminator protein rcc01690 (Protein from Rhodobacter capsulatus DE442)
- Capsid (Complex from Rhodobacter capsulatus DE442)
- Portal protein rcc01684 (Protein from Rhodobacter capsulatus DE442)
- Stopper protein rcc01689 (Protein from Rhodobacter capsulatus DE442)
- Tail (Complex from Rhodobacter capsulatus DE442)
Capsid-neck interface of empty GTA particle, asymmetric reconstruction
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ DOI: doi:10.1038/s41467-020-16669-9 Pubmed: 32541663 ]
- Tail (Complex from Rhodobacter capsulatus DE442)
- Stopper protein rcc01689 (Protein from Rhodobacter capsulatus DE442)
- Head spike fiber rcc01080 (Protein from Rhodobacter capsulatus DE442)
- Major capsid protein rcc01687 (Protein from Rhodobacter capsulatus DE442)
- Head spike (Complex from Rhodobacter capsulatus DE442)
- Head spike base rcc01079 (Protein from Rhodobacter capsulatus DE442)
- Portal protein rcc01684 (Protein from Rhodobacter capsulatus DE442)
- Tail terminator protein rcc01690 (Protein from Rhodobacter capsulatus DE442)
- Adaptor protein rcc01688 (Protein from Rhodobacter capsulatus DE442)
- Connector (Complex from Rhodobacter capsulatus DE442)
- Capsid (Complex from Rhodobacter capsulatus DE442)
- Rhodobacter capsulatus de442 gene transfer agent (760 kDa, Complex from Rhodobacter capsulatus DE442)