Prohead portal vertex of bacteriophage lambda
Resolution: 5.58 Å
EM Method: Single-particle
Fitted PDBs: 8xou
Q-score: 0.152
J Virol (2024) 98 pp. e0006824-e0006824 [ DOI: doi:10.1128/jvi.00068-24 Pubmed: 38661364 ]
- Major capsid protein (38 kDa, Protein from Escherichia phage Lambda)
- Escherichia phage lambda (Virus from Escherichia phage Lambda)
- Portal protein b (59 kDa, Protein from Escherichia phage Lambda)
Mature virion portal vertex of bacteriophage lambda
Resolution: 4.07 Å
EM Method: Single-particle
Fitted PDBs: 8xqb
Q-score: 0.334
J Virol (2024) 98 pp. e0006824-e0006824 [ DOI: doi:10.1128/jvi.00068-24 Pubmed: 38661364 ]
- Head-tail connector protein fii (12 kDa, Protein from Escherichia phage Lambda)
- Head completion protein (7 kDa, Protein from Escherichia phage Lambda)
- Escherichia phage lambda (Virus from Escherichia phage Lambda)
- Tail tube terminator protein (14 kDa, Protein from Escherichia phage Lambda)
- Major capsid protein (38 kDa, Protein from Escherichia phage Lambda)
- Portal protein b (59 kDa, Protein from Escherichia phage Lambda)
- Capsid decoration protein (11 kDa, Protein from Escherichia phage Lambda)
Human cytomegalovirus portal vertex, virion configuration 1 (VC1)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8tep
Q-score: 0.374
Sci Adv (2024) 10 pp. eadj1640-eadj1640 [ DOI: doi:10.1126/sciadv.adj1640 Pubmed: 38394211 ]
- Human herpesvirus 5 strain ad169 (Virus from Human herpesvirus 5 strain AD169)
- Large tegument protein deneddylase (253 kDa, Protein from Human herpesvirus 5 strain AD169)
- Inner tegument protein (110 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 1 (33 kDa, Protein from Human herpesvirus 5 strain AD169)
- Small capsomere-interacting protein (8 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 2 (71 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large structural phosphoprotein (112 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 1 (68 kDa, Protein from Human herpesvirus 5 strain AD169)
- Major capsid protein (154 kDa, Protein from Human herpesvirus 5 strain AD169)
Human cytomegalovirus portal vertex, virion configuration 2 (VC2)
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 8tes
Q-score: 0.567
Sci Adv (2024) 10 pp. eadj1640-eadj1640 [ Pubmed: 38394211 DOI: doi:10.1126/sciadv.adj1640 ]
- Triplex capsid protein 1 (33 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large tegument protein deneddylase (253 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large structural phosphoprotein (112 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 2 (71 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 1 (68 kDa, Protein from Human herpesvirus 5 strain AD169)
- Human herpesvirus 5 strain ad169 (Virus from Human herpesvirus 5 strain AD169)
- Small capsomere-interacting protein (8 kDa, Protein from Human herpesvirus 5 strain AD169)
- Major capsid protein (154 kDa, Protein from Human herpesvirus 5 strain AD169)
Human cytomegalovirus portal vertex, non-infectious enveloped particle (NIEP) configuration 1 (NC1)
Resolution: 4.26 Å
EM Method: Single-particle
Fitted PDBs: 8tet
Q-score: 0.461
Sci Adv (2024) 10 pp. eadj1640-eadj1640 [ Pubmed: 38394211 DOI: doi:10.1126/sciadv.adj1640 ]
- Triplex capsid protein 1 (33 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large tegument protein deneddylase (253 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large structural phosphoprotein (112 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 2 (71 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 1 (68 kDa, Protein from Human herpesvirus 5 strain AD169)
- Human herpesvirus 5 strain ad169 (Virus from Human herpesvirus 5 strain AD169)
- Small capsomere-interacting protein (8 kDa, Protein from Human herpesvirus 5 strain AD169)
- Major capsid protein (154 kDa, Protein from Human herpesvirus 5 strain AD169)
Resolution: 4.01 Å
EM Method: Single-particle
Fitted PDBs: 8teu
Q-score: 0.43
Sci Adv (2024) 10 pp. eadj1640-eadj1640 [ DOI: doi:10.1126/sciadv.adj1640 Pubmed: 38394211 ]
- Human herpesvirus 5 strain ad169 (Virus from Human herpesvirus 5 strain AD169)
- Large tegument protein deneddylase (253 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 1 (33 kDa, Protein from Human herpesvirus 5 strain AD169)
- Small capsomere-interacting protein (8 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 2 (71 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large structural phosphoprotein (112 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 1 (68 kDa, Protein from Human herpesvirus 5 strain AD169)
- Major capsid protein (154 kDa, Protein from Human herpesvirus 5 strain AD169)
Human cytomegalovirus penton vertex, CVSC-bound configuration
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 8tew
Q-score: 0.544
Sci Adv (2024) 10 pp. eadj1640-eadj1640 [ DOI: doi:10.1126/sciadv.adj1640 Pubmed: 38394211 ]
- Human herpesvirus 5 strain ad169 (Virus from Human herpesvirus 5 strain AD169)
- Large tegument protein deneddylase (253 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 1 (33 kDa, Protein from Human herpesvirus 5 strain AD169)
- Small capsomere-interacting protein (8 kDa, Protein from Human herpesvirus 5 strain AD169)
- Triplex capsid protein 2 (34 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 2 (71 kDa, Protein from Human herpesvirus 5 strain AD169)
- Large structural phosphoprotein (112 kDa, Protein from Human herpesvirus 5 strain AD169)
- Capsid vertex component 1 (68 kDa, Protein from Human herpesvirus 5 strain AD169)
- Major capsid protein (154 kDa, Protein from Human herpesvirus 5 strain AD169)
Zophobas morio black wasting virus strain NJ2-molitor virion structure
Resolution: 2.0 Å
EM Method: Single-particle
Fitted PDBs: 8t9x
Q-score: 0.736
Penzes JJ, Holm M, Firlar E, Kaelber JT
To Be Published
- Dna (5'-d(p*cp*gp*a)-3') (886 Da, DNA from Zophobas morio black wasting virus)
- Major capsid protein (48 kDa, Protein from Zophobas morio black wasting virus)
- Zophobas morio densovirus (Virus from Zophobas morio densovirus)
- Dna (5'-d(p*tp*cp*gp*ap*a)-3') (1 kDa, DNA from Zophobas morio black wasting virus)
- Water (18 Da, Ligand)
- Dna (5'-d(p*cp*ap*gp*gp*cp*cp*ap*ap*a)-3') (2 kDa, DNA from Zophobas morio black wasting virus)
Phi-29 scaffolding protein bound to intermediate-state MCP
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8f2m
Q-score: 0.388
Woodson ME, Morais MC, Prokhorov NS, Scott SD, Zhang W, Choi KH, Jardine PJ
To Be Published
- Major capsid protein (49 kDa, Protein from Bacillus phage phi29)
- Capsid assembly scaffolding protein (11 kDa, Protein from Bacillus phage phi29)
- Bacillus phage phi29 (Virus from Bacillus phage phi29)