C5 portal vertex in HCMV B-capsid
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8hex
Q-score: 0.283
Li Z, Pang J, Gao R, Wang Q, Zhang M, Yu X
Nat Commun (2023) 14 pp. 2025-2025 [ DOI: doi:10.1038/s41467-023-37779-0 Pubmed: 37041152 ]
- Major capsid protein (154 kDa, Protein from Human betaherpesvirus 5)
- Capsid vertex component 1 (68 kDa, Protein from Human betaherpesvirus 5)
- Portal protein (3 kDa, Protein from Human betaherpesvirus 5)
- Small capsomere-interacting protein (8 kDa, Protein from Human betaherpesvirus 5)
- Triplex capsid protein 2 (34 kDa, Protein from Human betaherpesvirus 5)
- Portal protein (1 kDa, Protein from Human betaherpesvirus 5)
- Triplex capsid protein 1 (33 kDa, Protein from Human betaherpesvirus 5)
- Portal protein (1 kDa, Protein from Human betaherpesvirus 5)
- Human betaherpesvirus 5 (Virus from Human betaherpesvirus 5)
- Capsid vertex component 2 (71 kDa, Protein from Human betaherpesvirus 5)
One CVSC-binding penton vertex in HCMV B-capsid
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 8hey
Q-score: 0.392
Li Z, Pang J, Gao R, Wang Q, Zhang M, Yu X
Nat Commun (2023) 14 pp. 2025-2025 [ DOI: doi:10.1038/s41467-023-37779-0 Pubmed: 37041152 ]
- Human betaherpesvirus 5 (Virus from Human betaherpesvirus 5)
- Triplex capsid protein 2 (34 kDa, Protein from Human betaherpesvirus 5)
- Major capsid protein (154 kDa, Protein from Human betaherpesvirus 5)
- Small capsomere-interacting protein (8 kDa, Protein from Human betaherpesvirus 5)
- Triplex capsid protein 1 (33 kDa, Protein from Human betaherpesvirus 5)
- Capsid vertex component 1 (68 kDa, Protein from Human betaherpesvirus 5)
- Capsid vertex component 2 (71 kDa, Protein from Human betaherpesvirus 5)
C5 portal vertex in the enveloped virion capsid
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7et3
Q-score: 0.398
Nat Commun (2021) 12 pp. 4538-4538 [ DOI: doi:10.1038/s41467-021-24820-3 Pubmed: 34315863 ]
- Capsid vertex component 1 (68 kDa, Protein from HHV-5, Human herpesvirus 5)
- Human betaherpesvirus 5 (Virus from Human betaherpesvirus 5)
- Capsid vertex component 2 (71 kDa, Protein from HHV-5, Human herpesvirus 5)
- Small capsomere-interacting protein (8 kDa, Protein from HHV-5, Human herpesvirus 5)
- Orfl92c_ul32 (112 kDa, Protein from HHV-5, Human herpesvirus 5)
- Triplex capsid protein 2 (34 kDa, Protein from HHV-5, Human herpesvirus 5)
- Major capsid protein (154 kDa, Protein from HHV-5, Human herpesvirus 5)
- Large tegument protein deneddylase (253 kDa, Protein from HHV-5, Human herpesvirus 5)
- Triplex capsid protein 1 (33 kDa, Protein from HHV-5, Human herpesvirus 5)
C5 portal vertex in the partially-enveloped virion capsid
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7etj
Q-score: 0.406
Nat Commun (2021) 12 pp. 4538-4538 [ DOI: doi:10.1038/s41467-021-24820-3 Pubmed: 34315863 ]
- Capsid vertex component 1 (68 kDa, Protein from HHV-5, Human herpesvirus 5)
- Human betaherpesvirus 5 (Virus from Human betaherpesvirus 5)
- Capsid vertex component 2 (71 kDa, Protein from HHV-5, Human herpesvirus 5)
- Small capsomere-interacting protein (8 kDa, Protein from HHV-5, Human herpesvirus 5)
- Orfl92c_ul32 (112 kDa, Protein from HHV-5, Human herpesvirus 5)
- Triplex capsid protein 2 (34 kDa, Protein from HHV-5, Human herpesvirus 5)
- Major capsid protein (154 kDa, Protein from HHV-5, Human herpesvirus 5)
- Large tegument protein deneddylase (253 kDa, Protein from HHV-5, Human herpesvirus 5)
- Triplex capsid protein 1 (33 kDa, Protein from HHV-5, Human herpesvirus 5)
C1 CVSC-binding penton vertex in the virion capsid of Human Cytomegalovirus
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7eto
Q-score: 0.428
Nat Commun (2021) 12 pp. 4538-4538 [ DOI: doi:10.1038/s41467-021-24820-3 Pubmed: 34315863 ]
- Human betaherpesvirus 5 (Virus from Human betaherpesvirus 5)
- Large tegument protein deneddylase (253 kDa, Protein from HHV-5, Human herpesvirus 5)
- Triplex capsid protein 2 (34 kDa, Protein from HHV-5, Human herpesvirus 5)
- Major capsid protein (154 kDa, Protein from HHV-5, Human herpesvirus 5)
- Orfl92c_ul32 (112 kDa, Protein from HHV-5, Human herpesvirus 5)
- Capsid vertex component 2 (71 kDa, Protein from HHV-5, Human herpesvirus 5)
- Capsid vertex component 1 (68 kDa, Protein from HHV-5, Human herpesvirus 5)
- Small capsomere-interacting protein (8 kDa, Protein from HHV-5, Human herpesvirus 5)
- Triplex capsid protein 1 (33 kDa, Protein from HHV-5, Human herpesvirus 5)
Epstein-Barr virus, C5 portal vertex
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7bqx
Q-score: 0.365
Li Z, Zhang X, Dong L, Pang J, Xu M, Zhong Q, Zeng MS, Yu X
Cell Res (2020) 30 pp. 873-884 [ Pubmed: 32620850 DOI: doi:10.1038/s41422-020-0363-0 ]
- Triplex capsid protein 1 (39 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Capsid vertex component 1 (54 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Human gammaherpesvirus 4 (Virus from Human gammaherpesvirus 4)
- Large tegument protein deneddylase (338 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Small capsomere-interacting protein (18 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Capsid vertex component 2 (62 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Major capsid protein (154 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Triplex capsid protein 2 (33 kDa, Protein from Epstein-Barr virus (strain B95-8))
Epstein-Barr virus, C1 portal-proximal penton vertex, CATC binding
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7br7
Q-score: 0.401
Li Z, Zhang X, Dong L, Pang J, Xu M, Zhong Q, Zeng MS, Yu X
Cell Res (2020) 30 pp. 873-884 [ Pubmed: 32620850 DOI: doi:10.1038/s41422-020-0363-0 ]
- Major capsid protein (154 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Large tegument protein deneddylase (338 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Triplex capsid protein 1 (39 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Triplex capsid protein 2 (33 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Human gammaherpesvirus 4 (Virus from Human gammaherpesvirus 4)
- Capsid vertex component 2 (62 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Capsid vertex component 1 (54 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Small capsomere-interacting protein (18 kDa, Protein from Epstein-Barr virus (strain B95-8))
Epstein-Barr virus, C5 penton vertex, CATC absent.
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7br8
Q-score: 0.039
Li Z, Zhang X, Dong L, Pang J, Xu M, Zhong Q, Zeng MS, Yu X
Cell Res (2020) 30 pp. 873-884 [ Pubmed: 32620850 DOI: doi:10.1038/s41422-020-0363-0 ]
- Small capsomere-interacting protein (18 kDa, Protein from HHV-4)
- Human gammaherpesvirus 4 (Virus from Human gammaherpesvirus 4)
- Major capsid protein (154 kDa, Protein from HHV-4)
- Triplex capsid protein 1 (39 kDa, Protein from HHV-4)
- Triplex capsid protein 2 (33 kDa, Protein from HHV-4)
Epstein-Barr virus, icosahedral tegumented capsid reconstruction
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7bsi
Q-score: 0.375
Li Z, Zhang X, Dong L, Pang J, Xu M, Zhong Q, Zeng MS, Yu X
Cell Res (2020) 30 pp. 873-884 [ Pubmed: 32620850 DOI: doi:10.1038/s41422-020-0363-0 ]
- Small capsomere-interacting protein (18 kDa, Protein from HHV-4)
- Human gammaherpesvirus 4 (Virus from Human gammaherpesvirus 4)
- Major capsid protein (154 kDa, Protein from HHV-4)
- Triplex capsid protein 1 (39 kDa, Protein from HHV-4)
- Triplex capsid protein 2 (33 kDa, Protein from HHV-4)
Structures of Capsid and Capsid-Associated Tegument Complex inside the Epstein-Barr Virus
Resolution: 5.5 Å
EM Method: Single-particle
Fitted PDBs: 6w19
Q-score: 0.059
Liu W, Cui Y, Wang C, Li Z, Gong D, Dai X, Bi GQ, Sun R, Zhou ZH
Nat Microbiol (2020) 5 pp. 1285-1298 [ DOI: doi:10.1038/s41564-020-0758-1 Pubmed: 32719506 ]
- Human herpesvirus 4 strain b95-8 (Virus from Human herpesvirus 4 strain B95-8)
- Triplex capsid protein 1 (39 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Small capsomere-interacting protein (18 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Triplex capsid protein 2 (33 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Major capsid protein (154 kDa, Protein from Epstein-Barr virus (strain B95-8))