One asymmetric unit of Singapore grouper iridovirus capsid
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8hif
Q-score: 0.491
Zhao Z, Huang Y, Liu C, Zhu D, Gao S, Liu S, Peng R, Zhang Y, Huang X, Qi J, Wong CCL, Zhang X, Wang P, Qin Q, Gao GF
Nat Commun (2023) 14 pp. 2050-2050 [ DOI: doi:10.1038/s41467-023-37681-9 Pubmed: 37041173 ]
- Singapore grouper iridovirus (Virus from Singapore grouper iridovirus)
- Penton protein (vp14) (15 kDa, Protein from Singapore grouper iridovirus)
- Vp38 (19 kDa, Protein from Singapore grouper iridovirus)
- Vp137 (49 kDa, Protein from Singapore grouper iridovirus)
- Vp88 (54 kDa, Protein from Singapore grouper iridovirus)
- Vp139 (11 kDa, Protein from Singapore grouper iridovirus)
- Major capsid protein (50 kDa, Protein from Singapore grouper iridovirus)
- Vp59 (16 kDa, Protein from Singapore grouper iridovirus)
Unique vertex of the phicrAss001 virion with C5 symmetry imposed
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 7qoh
Q-score: 0.559
Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA
Nature (2023) 617 pp. 409-416 [ DOI: doi:10.1038/s41586-023-06019-2 Pubmed: 37138077 ]
- Head fiber trimer protein gp21 (10 kDa, Protein from Bacteroides phage crAss001)
- Auxiliary capsid protein gp36 (36 kDa, Protein from Bacteroides phage crAss001)
- Bacteroides phage crass001 (Virus from Bacteroides phage crAss001)
- Portal protein gp20 (93 kDa, Protein from Bacteroides phage crAss001)
- Magnesium ion (24 Da, Ligand)
- Major capsid protein gp32 (57 kDa, Protein from Bacteroides phage crAss001)
- Portal vertex capsid protein gp57 (11 kDa, Protein from Bacteroides phage crAss001)
Unique vertex of the phicrAss001 virion
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 7qoi
Q-score: 0.505
Bayfield OW, Shkoporov AN, Yutin N, Khokhlova EV, Smith JLR, Hawkins DEDP, Koonin EV, Hill C, Antson AA
Nature (2023) 617 pp. 409-416 [ Pubmed: 37138077 DOI: doi:10.1038/s41586-023-06019-2 ]
- Ring protein 2 gp40 (26 kDa, Protein from Bacteroides phage crAss001)
- Portal vertex capsid protein gp57 (11 kDa, Protein from Bacteroides phage crAss001)
- Ring protein 1 gp43 (27 kDa, Protein from Bacteroides phage crAss001)
- Magnesium ion (24 Da, Ligand)
- Major capsid protein gp32 (57 kDa, Protein from Bacteroides phage crAss001)
- Head fiber trimer protein gp21 (10 kDa, Protein from Bacteroides phage crAss001)
- Auxiliary capsid protein gp36 (36 kDa, Protein from Bacteroides phage crAss001)
- Bacteroides phage crass001 (Virus from Bacteroides phage crAss001)
- Cargo protein 1 gp45 (90 kDa, Protein from Bacteroides phage crAss001)
- Portal protein gp20 (93 kDa, Protein from Bacteroides phage crAss001)
The asymmetric unit of P22 empty capsid
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8i1t
Q-score: 0.62
Xiao H, Zhou J, Yang F, Liu Z, Song J, Chen W, Liu H, Cheng L
Viruses (2023) 15 [ Pubmed: 36851569 DOI: doi:10.3390/v15020355 ]
- Salmonella phage p22 (Virus from Salmonella phage P22)
- Major capsid protein (46 kDa, Protein from Salmonella phage P22)
The asymmetric unit of P22 procapsid
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8i1v
Q-score: 0.542
Xiao H, Zhou J, Yang F, Liu Z, Song J, Chen W, Liu H, Cheng L
Viruses (2023) 15 [ Pubmed: 36851569 DOI: doi:10.3390/v15020355 ]
- Salmonella phage p22 (Virus from Salmonella phage P22)
- Major capsid protein (46 kDa, Protein from Salmonella phage P22)
- Scaffolding protein (33 kDa, Protein from Salmonella phage P22)
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8e16
Q-score: 0.616
Podgorski JM, Freeman K, Gosselin S, Huet A, Conway JF, Bird M, Grecco J, Patel S, Jacobs-Sera D, Hatfull G, Gogarten JP, Ravantti J, White SJ
Structure (2023) 31 pp. 282- [ Pubmed: 36649709 DOI: doi:10.1016/j.str.2022.12.012 ]
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8eb4
Q-score: 0.6
Podgorski JM, Freeman K, Gosselin S, Huet A, Conway JF, Bird M, Grecco J, Patel S, Jacobs-Sera D, Hatfull G, Gogarten JP, Ravantti J, White SJ
Structure (2023) 31 pp. 282- [ Pubmed: 36649709 DOI: doi:10.1016/j.str.2022.12.012 ]
- Major capsid protein (34 kDa, Protein from Gordonia phage Ziko)
- Gordonia phage ziko (Virus from Gordonia phage Ziko)
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 8ec2
Q-score: 0.623
Podgorski JM, Freeman K, Gosselin S, Huet A, Conway JF, Bird M, Grecco J, Patel S, Jacobs-Sera D, Hatfull G, Gogarten JP, Ravantti J, White SJ
Structure (2023) 31 pp. 282- [ Pubmed: 36649709 DOI: doi:10.1016/j.str.2022.12.012 ]
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8ec8
Q-score: 0.485
Podgorski JM, Freeman K, Gosselin S, Huet A, Conway JF, Bird M, Grecco J, Patel S, Jacobs-Sera D, Hatfull G, Gogarten JP, Ravantti J, White SJ
Structure (2023) 31 pp. 282- [ Pubmed: 36649709 DOI: doi:10.1016/j.str.2022.12.012 ]
- Mycobacterium phage bobi (Virus from Mycobacterium phage Bobi)
- Major capsid protein (31 kDa, Protein from Mycobacterium phage Bobi)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8eci
Q-score: 0.449
Podgorski JM, Freeman K, Gosselin S, Huet A, Conway JF, Bird M, Grecco J, Patel S, Jacobs-Sera D, Hatfull G, Gogarten JP, Ravantti J, White SJ
Structure (2023) 31 pp. 282- [ DOI: doi:10.1016/j.str.2022.12.012 Pubmed: 36649709 ]
- Major capsid protein (35 kDa, Protein from Arthrobacter phage Bridgette)
- Decoration protein (12 kDa, Protein from Arthrobacter phage Bridgette)
- Arthrobacter phage bridgette (Virus from Arthrobacter phage Bridgette)