Resolution: 3.88 Å
EM Method: Single-particle
Fitted PDBs: 7z90
Q-score: 0.308
Prochazkova M, Fuzik T, Grybchuk D, Yurchenko V, Plevka P
Virology (2022) 577 pp. 149-154 [ DOI: doi:10.1016/j.virol.2022.09.014 Pubmed: 36371873 ]
- Capsid protein,major capsid protein (86 kDa, Protein from Leishmania RNA virus 1 - 4)
- Leishmania rna virus 1 - 4 (9 MDa, Virus from Leishmania RNA virus 1 - 4)
Saccharomyces cerevisiae L-BC virus, open particle, asymmetric reconstruction
Resolution: 16.0 Å
EM Method: Single-particle
Fitted PDBs: 7zts
Q-score: 0.051
Grybchuk D, Prochazkova M, Fuzik T, Konovalovas A, Serva S, Yurchenko V, Plevka P
Commun Biol (2022) 5 pp. 847-847 [ DOI: doi:10.1038/s42003-022-03793-z Pubmed: 35986212 ]
Empty capsid of Saccharomyces cerevisiae virus L-BCLa
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7qwx
Q-score: 0.551
Grybchuk D, Prochazkova M, Fuzik T, Konovalovas A, Serva S, Yurchenko V, Plevka P
Commun Biol (2022) 5 pp. 847-847 [ Pubmed: 35986212 DOI: doi:10.1038/s42003-022-03793-z ]
Full capsid of Saccharomyces cerevisiae virus L-BCLa
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7qwz
Q-score: 0.477
Grybchuk D, Prochazkova M, Fuzik T, Konovalovas A, Serva S, Yurchenko V, Plevka P
Commun Biol (2022) 5 pp. 847-847 [ DOI: doi:10.1038/s42003-022-03793-z Pubmed: 35986212 ]
Saccharomyces cerevisiae L-BC virus, open particle, C5 reconstruction
Resolution: 10.0 Å
EM Method: Single-particle
Fitted PDBs: 7zuf
Q-score: 0.066
Grybchuk D, Prochazkova M, Fuzik T, Konovalovas A, Serva S, Yurchenko V, Plevka P
Commun Biol (2022) 5 pp. 847-847 [ Pubmed: 35986212 DOI: doi:10.1038/s42003-022-03793-z ]
Capsid of empty GTA particle computed with C5 symmetry
Resolution: 3.42 Å
EM Method: Single-particle
Fitted PDBs: 6tsu
Q-score: 0.532
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ DOI: doi:10.1038/s41467-020-16669-9 Pubmed: 32541663 ]
- Rhodobacter capsulatus de442 gene transfer agent capsid (80 kDa, Complex from Rhodobacter capsulatus DE442)
- Uncharacterized protein (32 kDa, Protein from Rhodobacter capsulatus DE442)
- Head spike (Complex from Rhodobacter capsulatus DE442)
- Major capsid protein rcc01687 (40 kDa, Protein from Rhodobacter capsulatus DE442)
- Uncharacterized protein (9 kDa, Protein from Rhodobacter capsulatus DE442)
Resolution: 10.47 Å
EM Method: Single-particle
Fitted PDBs: 6tui
Q-score: 0.08
Bardy P, Fuzik T, Hrebik D, Pantucek R, Beatty JT, Plevka P
Nat Commun (2020) 11 pp. 3034- [ Pubmed: 32541663 DOI: doi:10.1038/s41467-020-16669-9 ]
- Phage major capsid protein, hk97 family (40 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Stopper protein rcc01689 (12 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Connector (760 kDa, Complex from Rhodobacter capsulatus SB 1003)
- Head spike (80 kDa, Complex from Rhodobacter capsulatus SB 1003)
- Tail (730 kDa, Complex from Rhodobacter capsulatus SB 1003)
- Rhodobacter capsulatus de442 (8 MDa, Virus)
- Uncharacterized protein (32 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Portal protein rcc01684 (42 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Adaptor protein rcc01688 (20 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Tail terminator protein rcc01690 (13 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Capsid (5 MDa, Complex from Rhodobacter capsulatus SB 1003)
- Tail tube protein rcc01691 (14 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (9 kDa, Protein from Rhodobacter capsulatus SB 1003)
Capsid of native GTA particle computed with C5 symmetry
Resolution: 3.56 Å
EM Method: Single-particle
Fitted PDBs: 6tb9
Q-score: 0.496
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ Pubmed: 32541663 DOI: doi:10.1038/s41467-020-16669-9 ]
- Head spike fiber rcc01080 (32 kDa, Protein from Rhodobacter capsulatus)
- Major capsid protein rcc01687 (40 kDa, Protein from Rhodobacter capsulatus)
- Head spike base rcc01079 (9 kDa, Protein from Rhodobacter capsulatus)
- Rhodobacter capsulatus de442 gene transfer agent capsid (80 kDa, Complex from Rhodobacter capsulatus)
- Head spike (Complex from Rhodobacter capsulatus)
Virion of native gene transfer agent (GTA) particle
Resolution: 4.54 Å
EM Method: Single-particle
Fitted PDBs: 6tba
Q-score: 0.472
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ Pubmed: 32541663 DOI: doi:10.1038/s41467-020-16669-9 ]
- Iron/sulfur cluster (351 Da, Ligand)
- Baseplate (Complex from Rhodobacter capsulatus SB 1003)
- Phage major capsid protein, hk97 family (40 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (20 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Phage major tail protein, tp901-1 family (14 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Portal protein rcc01684 (42 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (32 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Connector (Complex from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (13 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (12 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (22 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Head spike (Complex from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (138 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (31 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (9 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Capsid (Complex from Rhodobacter capsulatus SB 1003)
- Rhodobacter capsulatus sb 1003 (880 kDa, Virus from Rhodobacter capsulatus SB 1003)
- Tail (Complex from Rhodobacter capsulatus SB 1003)
Isometric capsid of empty GTA particle computed with I4(I,n25r) symmetry
Resolution: 4.03 Å
EM Method: Single-particle
Fitted PDBs: 6tsw
Q-score: 0.434
Bardy P, Fuzik T, Hrebik D, Pantucek R, Thomas Beatty J, Plevka P
Nat Commun (2020) 11 pp. 3034-3034 [ DOI: doi:10.1038/s41467-020-16669-9 Pubmed: 32541663 ]