Resolution: 3.64 Å
EM Method: Single-particle
Fitted PDBs: 7dnh
Q-score: 0.403
He M, Chi X, Zha Z, Li Y, Chen J, Huang Y, Huang S, Yu M, Wang Z, Song S, Liu X, Wei S, Li Z, Li T, Wang Y, Yu H, Zhao Q, Zhang J, Zheng Q, Gu Y, Li S, Xia N
J Virol (2021) 95 [ Pubmed: 33472937 DOI: doi:10.1128/JVI.01587-20 ]
- The light chain of 2h3 fab fragment (23 kDa, Protein from Mus musculus)
- Human papillomavirus type 58 (Complex from Mus musculus)
- Human papillomavirus type 58 in complexed with the fab fragment of 2h3 (Complex from Human papillomavirus type 58)
- Major capsid protein l1 (59 kDa, Protein from Human papillomavirus type 58)
- The heavy chain of 2h3 fab fragment (23 kDa, Protein from Mus musculus)
- Mus musculus (Complex)
Resolution: 6.41 Å
EM Method: Single-particle
Fitted PDBs: 7dnk
Q-score: 0.184
He M, Chi X, Zha Z, Li Y, Chen J, Huang Y, Huang S, Yu M, Wang Z, Song S, Liu X, Wei S, Li Z, Li T, Wang Y, Yu H, Zhao Q, Zhang J, Zheng Q, Gu Y, Li S, Xia N
J Virol (2021) 95 [ DOI: doi:10.1128/JVI.01587-20 Pubmed: 33472937 ]
- The light chain of 5g9 fab fragment (23 kDa, Protein from Mus musculus)
- Human papillomavirus type 58 pseudpvirus (Complex)
- 2-fold sub-articles refinement of human papillomavirus type 58 pseudpvirus in complexed with the fab fragment of 5g9 (Complex from Mus musculus)
- The heavy chain of 5g9 fab fragment (22 kDa, Protein from Mus musculus)
- Major capsid protein l1 (59 kDa, Protein from Human papillomavirus type 58)
- Fab fragment of 5g9 (Complex from Human papillomavirus type 58)
Resolution: 4.19 Å
EM Method: Single-particle
Fitted PDBs: 7dnl
Q-score: 0.339
He M, Chi X, Zha Z, Li Y, Chen J, Huang Y, Huang S, Yu M, Wang Z, Song S, Liu X, Wei S, Li Z, Li T, Wang Y, Yu H, Zhao Q, Zhang J, Zheng Q, Gu Y, Li S, Xia N
J Virol (2021) 95 [ Pubmed: 33472937 DOI: doi:10.1128/JVI.01587-20 ]
- Major capsid protein l1 (59 kDa, Protein from Human papillomavirus type 58)
- Human papillomavirus type 58 (Complex)
- The heavy chain of 2h3 fab fragment (23 kDa, Protein from Mus musculus)
- Fab fragment of a4b4 (Complex from Human papillomavirus type 58)
- Human papillomavirus type 58 in complexed with the fab fragment of a4b4 (Complex from Mus musculus)
- The light chain of a4b4 fab fragment (24 kDa, Protein from Mus musculus)
Resolution: 10.47 Å
EM Method: Single-particle
Fitted PDBs: 6tui
Q-score: 0.08
Bardy P, Fuzik T, Hrebik D, Pantucek R, Beatty JT, Plevka P
Nat Commun (2020) 11 pp. 3034- [ Pubmed: 32541663 DOI: doi:10.1038/s41467-020-16669-9 ]
- Phage major capsid protein, hk97 family (40 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Stopper protein rcc01689 (12 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Connector (760 kDa, Complex from Rhodobacter capsulatus SB 1003)
- Head spike (80 kDa, Complex from Rhodobacter capsulatus SB 1003)
- Tail (730 kDa, Complex from Rhodobacter capsulatus SB 1003)
- Rhodobacter capsulatus de442 (8 MDa, Virus)
- Uncharacterized protein (32 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Portal protein rcc01684 (42 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Adaptor protein rcc01688 (20 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Tail terminator protein rcc01690 (13 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Capsid (5 MDa, Complex from Rhodobacter capsulatus SB 1003)
- Tail tube protein rcc01691 (14 kDa, Protein from Rhodobacter capsulatus SB 1003)
- Uncharacterized protein (9 kDa, Protein from Rhodobacter capsulatus SB 1003)
Epstein-Barr virus, C5 portal vertex
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7bqx
Q-score: 0.365
Li Z, Zhang X, Dong L, Pang J, Xu M, Zhong Q, Zeng MS, Yu X
Cell Res (2020) 30 pp. 873-884 [ Pubmed: 32620850 DOI: doi:10.1038/s41422-020-0363-0 ]
- Triplex capsid protein 1 (39 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Capsid vertex component 1 (54 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Human gammaherpesvirus 4 (Virus from Human gammaherpesvirus 4)
- Large tegument protein deneddylase (338 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Small capsomere-interacting protein (18 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Capsid vertex component 2 (62 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Major capsid protein (154 kDa, Protein from Epstein-Barr virus (strain B95-8))
- Triplex capsid protein 2 (33 kDa, Protein from Epstein-Barr virus (strain B95-8))
Epstein-Barr virus, C5 penton vertex, CATC absent.
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7br8
Q-score: 0.039
Li Z, Zhang X, Dong L, Pang J, Xu M, Zhong Q, Zeng MS, Yu X
Cell Res (2020) 30 pp. 873-884 [ Pubmed: 32620850 DOI: doi:10.1038/s41422-020-0363-0 ]
- Small capsomere-interacting protein (18 kDa, Protein from HHV-4)
- Human gammaherpesvirus 4 (Virus from Human gammaherpesvirus 4)
- Major capsid protein (154 kDa, Protein from HHV-4)
- Triplex capsid protein 1 (39 kDa, Protein from HHV-4)
- Triplex capsid protein 2 (33 kDa, Protein from HHV-4)
Epstein-Barr virus, icosahedral tegumented capsid reconstruction
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7bsi
Q-score: 0.375
Li Z, Zhang X, Dong L, Pang J, Xu M, Zhong Q, Zeng MS, Yu X
Cell Res (2020) 30 pp. 873-884 [ Pubmed: 32620850 DOI: doi:10.1038/s41422-020-0363-0 ]
- Small capsomere-interacting protein (18 kDa, Protein from HHV-4)
- Human gammaherpesvirus 4 (Virus from Human gammaherpesvirus 4)
- Major capsid protein (154 kDa, Protein from HHV-4)
- Triplex capsid protein 1 (39 kDa, Protein from HHV-4)
- Triplex capsid protein 2 (33 kDa, Protein from HHV-4)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7bw6
Q-score: 0.409
Sun J, Liu C, Peng R, Zhang FK, Tong Z, Liu S, Shi Y, Zhao Z, Zeng WB, Gao GF, Shen HJ, Yang X, Luo M, Qi J, Wang P
Nat Commun (2020) 11 pp. 4795-4795 [ Pubmed: 32963252 DOI: doi:10.1038/s41467-020-18537-y ]
- Human alphaherpesvirus 3 (Virus from Human alphaherpesvirus 3)
- Triplex capsid protein 2 (34 kDa, Protein from HHV-3,Human alphaherpesvirus 3)
- Small capsomere-interacting protein (24 kDa, Protein from HHV-3,Human alphaherpesvirus 3)
- Major capsid protein (155 kDa, Protein from HHV-3,Human alphaherpesvirus 3)
- Triplex capsid protein 1 (54 kDa, Protein from HHV-3,Human alphaherpesvirus 3)
Satellite phage P4 procapsid including size determination (Sid) protein
Resolution: 4.19 Å
EM Method: Single-particle
Fitted PDBs: 7jw1
Q-score: 0.445
Kizziah JL, Rodenburg CM, Dokland T
Viruses (2020) 12 [ DOI: doi:10.3390/v12090953 Pubmed: 32867300 ]
- Size determination protein sid (27 kDa, Protein from Enterobacteria phage P4)
- Major capsid protein gpn (40 kDa, Protein from Escherichia phage P2)
- P4 procapsid (Complex from Escherichia coli)
Subparticle refinement of human papillomavirus type 16 pesudovirus in complex with H16.001 Fab
Resolution: 3.43 Å
EM Method: Single-particle
Fitted PDBs: 7cn2
Q-score: 0.423
Huang W, He M, Ning T, Nie J, Zhang F, Zheng Q, Zhang R, Xu Y, Gu Y, Li S, Wang Y
NPJ Vaccines (2020) 5 pp. 89-89 [ Pubmed: 33042588 DOI: doi:10.1038/s41541-020-00236-w ]
- The heavy chain variable region of h16.001 fab fragment (13 kDa, Protein from Oryctolagus cuniculus)
- Human papillomavirus type 16 pesudovirus in complex with h16.001 fab (Complex from Human papillomavirus type 16)
- Major capsid protein l1 (56 kDa, Protein from Human papillomavirus type 16)
- The light chain variable region of h16.001 fab fragment (11 kDa, Protein from Oryctolagus cuniculus)