Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8g1r
Q-score: 0.331
Boyd CM, Subramanian S, Dunham DT, Parent KN, Seed KD
eLife (2024) 12 [ DOI: doi:10.7554/eLife.87611 Pubmed: 38206122 ]
- Serine protease (33 kDa, Protein from Vibrio cholerae)
- Ple procapsid (Complex from Vibrio cholerae)
- Major head protein (38 kDa, Protein from Vibrio phage ICP1 2011 A)
SaPI1 mature capsid structure containing DNA
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8vd4
Q-score: 0.566
Mukherjee A, Kizziah JL, Hawkins NC, Nasef MO, Parker LK, Dokland T
J Mol Biol (2023) 436 pp. 168415-168415 [ Pubmed: 38135177 DOI: doi:10.1016/j.jmb.2023.168415 ]
- Dubowvirus dv80alpha (Virus from Dubowvirus dv80alpha)
- Major head protein (36 kDa, Protein from Dubowvirus dv80alpha)
Capsid of DT57C bacteriophage in the full state
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8ho3
Q-score: 0.524
Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M
Nat Commun (2023) 14 pp. 8205-8205 [ Pubmed: 38081816 DOI: doi:10.1038/s41467-023-43824-9 ]
- Escherichia phage dt57c (Virus from Escherichia phage DT57C)
- Major head protein (50 kDa, Protein from Escherichia phage DT57C)
Capsid of DT57C bacteriophage in the empty state
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8hqk
Q-score: 0.507
Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M
Nat Commun (2023) 14 pp. 8205-8205 [ Pubmed: 38081816 DOI: doi:10.1038/s41467-023-43824-9 ]
- Escherichia phage dt57c (Virus from Escherichia phage DT57C)
- Major head protein (50 kDa, Protein from Escherichia phage DT57C)
Bacteriophage SU10 virion (C1)
Resolution: 7.4 Å
EM Method: Single-particle
Fitted PDBs: 7z4b
Q-score: 0.194
Siborova M, Fuzik T, Prochazkova M, Novacek J, Benesik M, Nilsson AS, Plevka P
Nat Commun (2022) 13 pp. 5622-5622 [ Pubmed: 36153309 DOI: doi:10.1038/s41467-022-33305-w ]
- Putative tail tip fiber protein (35 kDa, Protein from Escherichia phage vB EcoP SU10)
- Putative structural protein (29 kDa, Protein from Escherichia phage vB EcoP SU10)
- Major head protein (38 kDa, Protein from Escherichia phage vB EcoP SU10)
- Escherichia phage vb_ecop_su10 (32 MDa, Virus from Escherichia phage vB EcoP SU10)
- Portal protein (85 kDa, Protein from Escherichia phage vB EcoP SU10)
- Adaptor (28 kDa, Protein from Escherichia phage vB EcoP SU10)
- Putative tail fiber (83 kDa, Protein from Escherichia phage vB EcoP SU10)
- Surface protein (110 kDa, Protein from Escherichia phage vB EcoP SU10)
The capsid of bacteriophage SU10.
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7z49
Q-score: -0.007
Siborova M, Fuzik T, Prochazkova M, Novacek J, Benesik M, Nilsson AS, Plevka P
Nat Commun (2022) 13 pp. 5622-5622 [ Pubmed: 36153309 DOI: doi:10.1038/s41467-022-33305-w ]
- Escherichia phage vb_ecop_su10 (27 MDa, Virus from Escherichia phage vB EcoP SU10)
- Major head protein (38 kDa, Protein from Escherichia phage vB EcoP SU10)
Central part (C10) of bacteriophage SU10 capsid
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7z45
Q-score: 0.457
Siborova M, Fuzik T, Prochazkova M, Novacek J, Benesik M, Nilsson AS, Plevka P
Nat Commun (2022) 13 pp. 5622-5622 [ Pubmed: 36153309 DOI: doi:10.1038/s41467-022-33305-w ]
- Escherichia phage vb_ecop_su10 (9 MDa, Virus from Escherichia phage vB EcoP SU10)
- Major head protein (38 kDa, Protein from Escherichia phage vB EcoP SU10)
Top part (C5) of bacteriophage SU10 capsid
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7z46
Q-score: 0.383
Siborova M, Fuzik T, Prochazkova M, Novacek J, Benesik M, Nilsson AS, Plevka P
Nat Commun (2022) 13 pp. 5622-5622 [ Pubmed: 36153309 DOI: doi:10.1038/s41467-022-33305-w ]
- Escherichia phage vb_ecop_su10 (5 MDa, Virus from Escherichia phage vB EcoP SU10)
- Major head protein (38 kDa, Protein from Escherichia phage vB EcoP SU10)
Bacteriophage SU10 tail and bottom part of the capsid (C1)
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 7z4a
Q-score: 0.197
Siborova M, Fuzik T, Prochazkova M, Novacek J, Benesik M, Nilsson AS, Plevka P
Nat Commun (2022) 13 pp. 5622-5622 [ Pubmed: 36153309 DOI: doi:10.1038/s41467-022-33305-w ]
- Major head protein (38 kDa, Protein from Escherichia phage vB EcoP SU10)
- Portal protein (85 kDa, Protein from Escherichia phage vB EcoP SU10)
- Putative tail fiber (83 kDa, Protein from Escherichia phage vB EcoP SU10)
- Adaptor protein (28 kDa, Protein from Escherichia phage vB EcoP SU10)
- Surface protein (110 kDa, Protein from Escherichia phage vB EcoP SU10)
- Escherichia phage vb_ecop_su10 (4 MDa, Virus from Escherichia phage vB EcoP SU10)
Bottom part (C5) of bacteriophage SU10 capsid
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7z48
Q-score: 0.352
Siborova M, Fuzik T, Prochazkova M, Novacek J, Benesik M, Nilsson AS, Plevka P
Nat Commun (2022) 13 pp. 5622-5622 [ Pubmed: 36153309 DOI: doi:10.1038/s41467-022-33305-w ]
- Major head protein (38 kDa, Protein from Escherichia phage vB EcoP SU10)
- Escherichia phage vb_ecop_su10 (655 MDa, Virus from Escherichia phage vB EcoP SU10)