Electron Microscopy Data Bank

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Pom34-Pom152 membrane attachment site yeast NPC

Release date: Oct. 11, 2023
Resolution: 7.0 Å
EM Method: Single-particle
Fitted PDBs: 8t9l
Q-score: 0.17

Akey CW, Echeverria I, Ouch C, Nudelman I, Shi Y, Wang J, Chait BT, Sali A, Fernandez-Martinez J, Rout MP

Mol Cell (2023) 83 pp. 3283-3302.e5 [ Pubmed: 37738963 DOI: doi:10.1016/j.molcel.2023.08.025 ]

Sample:

Nuclear pore complex (Complex from Saccharomyces cerevisiae)
Nucleoporin pom34 (34 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin pom152 (151 kDa, Protein from Saccharomyces cerevisiae)
Pom34-pom152 inner ring anchor complex (Complex from Saccharomyces cerevisiae)

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EMD-41300

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Inner spoke ring of the yeast NPC

Release date: Oct. 11, 2023
Resolution: 6.6 Å
EM Method: Single-particle
Fitted PDBs: 8tj5
Q-score: 0.113

Akey CW, Echeverria I, Ouch C, Nudelman I, Shi Y, Wang J, Chait BT, Sali A, Fernandez-Martinez J, Rout MP

Mol Cell (2023) 83 pp. 3283-3302.e5 [ Pubmed: 37738963 DOI: doi:10.1016/j.molcel.2023.08.025 ]

Sample:

Nuclear pore complex (18 MDa, Complex from Saccharomyces cerevisiae)
Nucleoporin nup57 (57 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup192 (191 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup188 (188 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup53 (52 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nsp1 (86 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup170 (169 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nic96 (96 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup157 (156 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin 59 (58 kDa, Protein from Saccharomyces cerevisiae)
Nucleoporin nup49/nsp49 (49 kDa, Protein from Saccharomyces cerevisiae)
Spoke connector (3 kDa, Protein from Saccharomyces cerevisiae)

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EMD-31940

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Core region of nuclear ring asymmetric unit of Xenopus laevis nuclear pore complex

Release date: July 13, 2022
Resolution: 6.8 Å
EM Method: Single-particle

Tai L, Zhu Y, Sun F

To Be Published

Sample:

Nuclear pore complex (Complex from Xenopus laevis)

EMD-31942

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Cytoplasmic ring asymmetric unit of Xenopus laevis nuclear pore complex

Release date: July 13, 2022
Resolution: 7.6 Å
EM Method: Single-particle

Tai L, Zhu Y, Sun F

To Be Published

Sample:

Nuclear pore complex (Complex from Xenopus laevis)

EMD-25818

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CryoEM map of the cytoplasmic ring of the nuclear pore complex from Xenopus laevis

Release date: June 29, 2022
Resolution: 6.9 Å
EM Method: Single-particle

Fontana P, Wu H

Science (2022) 376 pp. eabm9326- [ ]

Sample:

Cytoplasmic ring of nuclear pore complex (Complex from Xenopus laevis)

EMD-25817

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Cryo-EM map of protomer of the cytoplasmic ring of the nuclear pore complex from Xenopus laevis

Release date: June 22, 2022
Resolution: 6.9 Å
EM Method: Single-particle

Fontana P, Dong Y, Pi X, Tong AB, Hecksel CW, Wang L, Fu TM, Bustamante C, Wu H

Science (2022) 376 pp. eabm9326-eabm9326 [ DOI: doi:10.1126/science.abm9326 Pubmed: 35679401 ]

Sample:

Cytoplasmic ring of nuclear pore complex (Complex from Xenopus laevis)

EMD-32662

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Cryo-EM map of the inner ring dimer of the Saccharomyces cerevisiae nuclear pore complex

Release date: April 13, 2022
Resolution: 7.69 Å
EM Method: Single-particle

Li Z, Chen S, Zhao L, Huang G, Pi X, Sun S, Wang P, Sui SF

Cell Res (2022) 32 pp. 437-450 [ Pubmed: 35301440 DOI: doi:10.1038/s41422-022-00632-y ]

Sample:

Cryo-em structure of the inner ring dimer of the saccharomyces cerevisiae nuclear pore complex (Complex from Saccharomyces cerevisiae)

EMD-31064

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Stable core region of the Xenopus laevis NPC nuclear ring

Release date: March 23, 2022
Resolution: 6.8 Å
EM Method: Single-particle

Sun F, Zhu Y, Tai L, Chan C, Xu J, Yin G, Ren H, Zhao Q, Jia M, Ma X, Zhao L, Zhao G, Zhu X, An Y, Wang X, Huang C, Zhang L, Fan J, Zhang C

To Be Published

Sample:

Nuclear ring of xenopus laevis nuclear pore complex (Complex from Xenopus laevis)

EMD-31065

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Nuclear ring subunit of Xenopus laevis NPC

Release date: March 23, 2022
Resolution: 7.8 Å
EM Method: Single-particle

Sun F, Zhu Y, Tai L, Chan C, Xu J, Yin G, Ren H, Zhao Q, Jia M, Ma X, Zhao L, Zhao G, Zhu X, An Y, Wang X, Huang C, Zhang L, Fan J, Zhang C

To Be Published

Sample:

Nuclear pore complex (Complex from Xenopus laevis)

EMD-31067

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Cytoplasmic ring asymmetric unit of Xenopus laevis NPC

Release date: March 23, 2022
Resolution: 7.6 Å
EM Method: Single-particle

Sun F, Zhu Y, Tai L, Chan C, Xu J, Yin G, Ren H, Zhao Q, Jia M, Ma X, Zhao L, Zhao G, Zhu X, An Y, Wang X, Huang C, Zhang L, Fan J, Zhang C

To Be Published

Sample:

Nuclear ring of xenopus laevis nuclear pore complex (Complex from Xenopus laevis)

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