Electron Microscopy Data Bank

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Collided ribosome in a disome unit from S. cerevisiae

Release date: Feb. 22, 2023
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7zux
Q-score: 0.516

Best K, Ikeuchi K, Kater L, Best D, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R

Nat Commun (2023) 14 pp. 921-921 [ Pubmed: 36801861 DOI: doi:10.1038/s41467-023-36230-8 ]

Sample:

60s ribosomal protein l19-a (21 kDa, Protein from baker's yeast)
40s ribosomal protein s21-a (9 kDa, Protein from baker's yeast)
40s ribosomal protein s1-a (28 kDa, Protein from baker's yeast)
60s ribosomal protein l30 (10 kDa, Protein from baker's yeast)
60s ribosomal protein l31-a (12 kDa, Protein from baker's yeast)
60s ribosomal protein l9-a (21 kDa, Protein from baker's yeast)
60s ribosomal protein l20-a (20 kDa, Protein from baker's yeast)
60s ribosomal protein l15-a (24 kDa, Protein from baker's yeast)
60s ribosomal protein l33-a (12 kDa, Protein from baker's yeast)
60s ribosomal protein l37-a (9 kDa, Protein from baker's yeast)
60s ribosomal protein l4-a (39 kDa, Protein from baker's yeast)
60s ribosomal protein l41-a (3 kDa, Protein from baker's yeast)
40s ribosomal protein s26-b (11 kDa, Protein from baker's yeast)
60s ribosomal protein l24-a (14 kDa, Protein from baker's yeast)
18s ribosomal rna (579 kDa, RNA from baker's yeast)
60s ribosomal protein l29 (6 kDa, Protein from baker's yeast)
40s ribosomal protein s28-a (7 kDa, Protein from baker's yeast)
40s ribosomal protein s11-a (16 kDa, Protein from baker's yeast)
40s ribosomal protein s17-a (15 kDa, Protein from baker's yeast)
60s ribosomal protein l13-a (21 kDa, Protein from baker's yeast)
60s ribosomal protein l8-a (25 kDa, Protein from baker's yeast)
60s ribosomal protein l14-a (14 kDa, Protein from baker's yeast)
40s ribosomal protein s14-b (13 kDa, Protein from baker's yeast)
60s ribosomal protein l21-a (18 kDa, Protein from baker's yeast)
5.8s ribosomal rna (50 kDa, RNA from baker's yeast)
60s ribosomal protein l34-a (12 kDa, Protein from baker's yeast)
40s ribosomal protein s2 (23 kDa, Protein from baker's yeast)
60s ribosomal protein l32 (14 kDa, Protein from baker's yeast)
40s ribosomal protein s9-a (21 kDa, Protein from baker's yeast)
40s ribosomal protein s16-a (15 kDa, Protein from baker's yeast)
60s ribosomal protein l27-a (15 kDa, Protein from baker's yeast)
60s ribosomal protein l17-a (20 kDa, Protein from baker's yeast)
60s ribosomal protein l5 (33 kDa, Protein from baker's yeast)
40s ribosomal protein s15 (13 kDa, Protein from baker's yeast)
40s ribosomal protein s29-a (6 kDa, Protein from baker's yeast)
P/e trna (24 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s27-a (8 kDa, Protein from baker's yeast)
60s ribosomal protein l16-a (22 kDa, Protein from baker's yeast)
40s ribosomal protein s7-a (21 kDa, Protein from baker's yeast)
60s ribosomal subunit (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l36-a (11 kDa, Protein from baker's yeast)
60s ribosomal protein l22-a (11 kDa, Protein from baker's yeast)
Ubiquitin (8 kDa, Protein from baker's yeast)
60s ribosomal protein l25 (13 kDa, Protein from baker's yeast)
40s ribosomal protein s23-a (15 kDa, Protein from baker's yeast)
60s ribosomal protein l39 (6 kDa, Protein from baker's yeast)
60s ribosomal protein l18-a (20 kDa, Protein from baker's yeast)
60s ribosomal protein l42-a (11 kDa, Protein from baker's yeast)
60s ribosomal protein l7-a (25 kDa, Protein from baker's yeast)
40s ribosomal subunit (Complex from Saccharomyces cerevisiae)
40s ribosomal protein s5 (22 kDa, Protein from baker's yeast)
60s ribosomal protein l26-a (14 kDa, Protein from baker's yeast)
60s ribosomal protein l11-b (19 kDa, Protein from baker's yeast)
40s ribosomal protein s12 (13 kDa, Protein from baker's yeast)
40s ribosomal protein s3 (24 kDa, Protein from baker's yeast)
Magnesium ion (24 Da, Ligand)
40s ribosomal protein s22-a (14 kDa, Protein from baker's yeast)
40s ribosomal protein s18-a (16 kDa, Protein from baker's yeast)
60s ribosomal protein l40-a (6 kDa, Protein from baker's yeast)
A/p trna (24 kDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l6-b (20 kDa, Protein from baker's yeast)
60s ribosomal protein l2-a (27 kDa, Protein from baker's yeast)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from baker's yeast)
40s ribosomal protein s10-a (11 kDa, Protein from baker's yeast)
5s ribosomal rna (38 kDa, RNA from baker's yeast)
40s ribosomal protein s6-a (26 kDa, Protein from baker's yeast)
60s ribosomal protein l10 (25 kDa, Protein from baker's yeast)
Collided ribosome of a disome unit (Complex from Saccharomyces cerevisiae)
40s ribosomal protein s4-a (29 kDa, Protein from baker's yeast)
60s ribosomal protein l35-a (13 kDa, Protein from baker's yeast)
40s ribosomal protein s8-b (22 kDa, Protein from baker's yeast)
25s ribosomal rna (1 MDa, RNA from baker's yeast)
Zinc ion (65 Da, Ligand)
60s ribosomal protein l23-a (14 kDa, Protein from baker's yeast)
40s ribosomal protein s19-a (15 kDa, Protein from baker's yeast)
60s ribosomal protein l28 (16 kDa, Protein from baker's yeast)
60s ribosomal protein l43-a (9 kDa, Protein from baker's yeast)
40s ribosomal protein s20 (11 kDa, Protein from baker's yeast)
40s ribosomal protein s13 (16 kDa, Protein from baker's yeast)
60s ribosomal protein l38 (8 kDa, Protein from baker's yeast)
60s ribosomal protein l3 (43 kDa, Protein from baker's yeast)
40s ribosomal protein s24-a (15 kDa, Protein from baker's yeast)
40s ribosomal protein s30-a (6 kDa, Protein from baker's yeast)
40s ribosomal protein s25-a (9 kDa, Protein from baker's yeast)
40s ribosomal protein s0-a (22 kDa, Protein from Saccharomyces cerevisiae)

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