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sample_name:"P-tRNA" AND electron_source:"FIELD EMISSION GUN" AND xref_links:"pfam" AND author_name:"Berninghausen O"
Collided ribosome in a disome unit from S. cerevisiae
Release date: Feb. 22, 2023
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7zux
Q-score: 0.516
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7zux
Q-score: 0.516
Best K, Ikeuchi K, Kater L, Best D, Musial J, Matsuo Y, Berninghausen O, Becker T, Inada T, Beckmann R
Nat Commun (2023) 14 pp. 921-921 [ Pubmed: 36801861 DOI: doi:10.1038/s41467-023-36230-8 ]
Sample:
- 60s ribosomal protein l19-a (21 kDa, Protein from baker's yeast)
- 40s ribosomal protein s21-a (9 kDa, Protein from baker's yeast)
- 40s ribosomal protein s1-a (28 kDa, Protein from baker's yeast)
- 60s ribosomal protein l30 (10 kDa, Protein from baker's yeast)
- 60s ribosomal protein l31-a (12 kDa, Protein from baker's yeast)
- 60s ribosomal protein l9-a (21 kDa, Protein from baker's yeast)
- 60s ribosomal protein l20-a (20 kDa, Protein from baker's yeast)
- 60s ribosomal protein l15-a (24 kDa, Protein from baker's yeast)
- 60s ribosomal protein l33-a (12 kDa, Protein from baker's yeast)
- 60s ribosomal protein l37-a (9 kDa, Protein from baker's yeast)
- 60s ribosomal protein l4-a (39 kDa, Protein from baker's yeast)
- 60s ribosomal protein l41-a (3 kDa, Protein from baker's yeast)
- 40s ribosomal protein s26-b (11 kDa, Protein from baker's yeast)
- 60s ribosomal protein l24-a (14 kDa, Protein from baker's yeast)
- 18s ribosomal rna (579 kDa, RNA from baker's yeast)
- 60s ribosomal protein l29 (6 kDa, Protein from baker's yeast)
- 40s ribosomal protein s28-a (7 kDa, Protein from baker's yeast)
- 40s ribosomal protein s11-a (16 kDa, Protein from baker's yeast)
- 40s ribosomal protein s17-a (15 kDa, Protein from baker's yeast)
- 60s ribosomal protein l13-a (21 kDa, Protein from baker's yeast)
- 60s ribosomal protein l8-a (25 kDa, Protein from baker's yeast)
- 60s ribosomal protein l14-a (14 kDa, Protein from baker's yeast)
- 40s ribosomal protein s14-b (13 kDa, Protein from baker's yeast)
- 60s ribosomal protein l21-a (18 kDa, Protein from baker's yeast)
- 5.8s ribosomal rna (50 kDa, RNA from baker's yeast)
- 60s ribosomal protein l34-a (12 kDa, Protein from baker's yeast)
- 40s ribosomal protein s2 (23 kDa, Protein from baker's yeast)
- 60s ribosomal protein l32 (14 kDa, Protein from baker's yeast)
- 40s ribosomal protein s9-a (21 kDa, Protein from baker's yeast)
- 40s ribosomal protein s16-a (15 kDa, Protein from baker's yeast)
- 60s ribosomal protein l27-a (15 kDa, Protein from baker's yeast)
- 60s ribosomal protein l17-a (20 kDa, Protein from baker's yeast)
- 60s ribosomal protein l5 (33 kDa, Protein from baker's yeast)
- 40s ribosomal protein s15 (13 kDa, Protein from baker's yeast)
- 40s ribosomal protein s29-a (6 kDa, Protein from baker's yeast)
- P/e trna (24 kDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s27-a (8 kDa, Protein from baker's yeast)
- 60s ribosomal protein l16-a (22 kDa, Protein from baker's yeast)
- 40s ribosomal protein s7-a (21 kDa, Protein from baker's yeast)
- 60s ribosomal subunit (Complex from Saccharomyces cerevisiae)
- 60s ribosomal protein l36-a (11 kDa, Protein from baker's yeast)
- 60s ribosomal protein l22-a (11 kDa, Protein from baker's yeast)
- Ubiquitin (8 kDa, Protein from baker's yeast)
- 60s ribosomal protein l25 (13 kDa, Protein from baker's yeast)
- 40s ribosomal protein s23-a (15 kDa, Protein from baker's yeast)
- 60s ribosomal protein l39 (6 kDa, Protein from baker's yeast)
- 60s ribosomal protein l18-a (20 kDa, Protein from baker's yeast)
- 60s ribosomal protein l42-a (11 kDa, Protein from baker's yeast)
- 60s ribosomal protein l7-a (25 kDa, Protein from baker's yeast)
- 40s ribosomal subunit (Complex from Saccharomyces cerevisiae)
- 40s ribosomal protein s5 (22 kDa, Protein from baker's yeast)
- 60s ribosomal protein l26-a (14 kDa, Protein from baker's yeast)
- 60s ribosomal protein l11-b (19 kDa, Protein from baker's yeast)
- 40s ribosomal protein s12 (13 kDa, Protein from baker's yeast)
- 40s ribosomal protein s3 (24 kDa, Protein from baker's yeast)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s22-a (14 kDa, Protein from baker's yeast)
- 40s ribosomal protein s18-a (16 kDa, Protein from baker's yeast)
- 60s ribosomal protein l40-a (6 kDa, Protein from baker's yeast)
- A/p trna (24 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l6-b (20 kDa, Protein from baker's yeast)
- 60s ribosomal protein l2-a (27 kDa, Protein from baker's yeast)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from baker's yeast)
- 40s ribosomal protein s10-a (11 kDa, Protein from baker's yeast)
- 5s ribosomal rna (38 kDa, RNA from baker's yeast)
- 40s ribosomal protein s6-a (26 kDa, Protein from baker's yeast)
- 60s ribosomal protein l10 (25 kDa, Protein from baker's yeast)
- Collided ribosome of a disome unit (Complex from Saccharomyces cerevisiae)
- 40s ribosomal protein s4-a (29 kDa, Protein from baker's yeast)
- 60s ribosomal protein l35-a (13 kDa, Protein from baker's yeast)
- 40s ribosomal protein s8-b (22 kDa, Protein from baker's yeast)
- 25s ribosomal rna (1 MDa, RNA from baker's yeast)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l23-a (14 kDa, Protein from baker's yeast)
- 40s ribosomal protein s19-a (15 kDa, Protein from baker's yeast)
- 60s ribosomal protein l28 (16 kDa, Protein from baker's yeast)
- 60s ribosomal protein l43-a (9 kDa, Protein from baker's yeast)
- 40s ribosomal protein s20 (11 kDa, Protein from baker's yeast)
- 40s ribosomal protein s13 (16 kDa, Protein from baker's yeast)
- 60s ribosomal protein l38 (8 kDa, Protein from baker's yeast)
- 60s ribosomal protein l3 (43 kDa, Protein from baker's yeast)
- 40s ribosomal protein s24-a (15 kDa, Protein from baker's yeast)
- 40s ribosomal protein s30-a (6 kDa, Protein from baker's yeast)
- 40s ribosomal protein s25-a (9 kDa, Protein from baker's yeast)
- 40s ribosomal protein s0-a (22 kDa, Protein from Saccharomyces cerevisiae)
Release date: April 14, 2021
Resolution: 4.36 Å
EM Method: Single-particle
Fitted PDBs: 7nrd
Q-score: 0.363
Resolution: 4.36 Å
EM Method: Single-particle
Fitted PDBs: 7nrd
Q-score: 0.363
Pochopien AA, Beckert B, Kasvandik S, Berninghausen O, Beckmann R, Tenson T, Wilson DN
PNAS (2021) 118 [ Pubmed: 33790014 DOI: doi:10.1073/pnas.2022756118 ]
Sample:
- 60s ribosomal protein l27-a (15 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l35-a (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l9-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l34-a (12 kDa, Protein from Baker's yeast)
- Ubiquitin-40s ribosomal protein s31 (8 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s15 (13 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s29-a (6 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s13 (16 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s3 (24 kDa, Protein from Baker's yeast)
- Multiprotein-bridging factor 1 (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l6-b (18 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s0-a (22 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l33-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l31-a (12 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s11-a (16 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l41-b (3 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l8-a (25 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l26-a (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s6-a (24 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s5 (22 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s26-b (11 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l5 (33 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l19-a (21 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s10-a (11 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l4-a (39 kDa, Protein from Baker's yeast)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s7-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l3 (43 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l42-a (11 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s8-a (21 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s12 (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l24-a (7 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l20-a (20 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s4-a (29 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l39 (6 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s14-b (13 kDa, Protein from Baker's yeast)
- Trna (77-mer) (24 kDa, RNA from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l25 (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l21-a (18 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s9-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l10 (25 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l22-a (11 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s21-a (9 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s24-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s25-a (7 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l32 (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s16-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s28-a (7 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s22-a (14 kDa, Protein from Baker's yeast)
- Tpa_inf: saccharomyces cerevisiae s288c chromosome xii, complete sequence (579 kDa, RNA from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l28 (16 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s18-a (16 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l2-a (27 kDa, Protein from Baker's yeast)
- 5s rrna (121-mer) (38 kDa, RNA from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l37-a (9 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s23-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s19-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s30-a (5 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l43-a (9 kDa, Protein from Baker's yeast)
- Ubiquitin-60s ribosomal protein l40 (6 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l11-b (19 kDa, Protein from Baker's yeast)
- Structure of the yeast gcn1-bound coilliding stalled 80s ribosome with mbf1, gir2, a/p-trna and p/e-trna (Complex from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l14-a (14 kDa, Protein from Baker's yeast)
- 25s rrna (3184-mer) (1 MDa, RNA from Saccharomyces cerevisiae S288C)
- 40s ribosomal protein s20 (11 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l18-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l38 (8 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l15-a (24 kDa, Protein from Baker's yeast)
- 5.8s rrna (158-mer) (50 kDa, RNA from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l7-a (25 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s2 (23 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l13-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l30 (10 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l36-a (11 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s1-a (24 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s17-b (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l17-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l16-a (22 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l29 (6 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s27-a (8 kDa, Protein from Baker's yeast)
- Trna (75-mer) (24 kDa, RNA from Baker's yeast)
- 60s ribosomal protein l23-a (14 kDa, Protein from Baker's yeast)
- Mrna (32-mer) (9 kDa, RNA from Saccharomyces cerevisiae S288c)
Structure of XBP1u-paused ribosome nascent chain complex (post-state)
Release date: July 10, 2019
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6r5q
Q-score: 0.486
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6r5q
Q-score: 0.486
Shanmuganathan V, Schiller N, Magoulopoulou A, Cheng J, Braunger K, Cymer F, Berninghausen O, Beatrix B, Kohno K, Heijne GV, Beckmann R
eLife (2019) 8 [ DOI: doi:10.7554/eLife.46267 Pubmed: 31246176 ]
Sample:
- El34 (12 kDa, Protein from Rabbit)
- Ul6 (21 kDa, Protein from Rabbit)
- E-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- Es26 (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (21 kDa, Protein from Rabbit)
- Ribosomal protein s23 (15 kDa, Protein from Rabbit)
- Ribosomal protein es25 (8 kDa, Protein from Rabbit)
- Es24 (14 kDa, Protein from Oryctolagus cuniculus)
- Es31 (7 kDa, Protein from Rabbit)
- Ribosomal protein s15a (14 kDa, Protein from Rabbit)
- El30 (10 kDa, Protein from Rabbit)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein s28 (7 kDa, Protein from Rabbit)
- 40s ribosomal protein s30 (6 kDa, Protein from Rabbit)
- Trna (Complex from Saccharomyces cerevisiae)
- Ul29 (14 kDa, Protein from Rabbit)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Rabbit)
- 40s ribosomal protein s6 (27 kDa, Protein from Rabbit)
- Structure of xbp1u-paused ribosome nascent chain complex (post-state). (Complex)
- El19 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein us15 (17 kDa, Protein from Rabbit)
- Ribosomal protein rack1 (34 kDa, Protein from Rabbit)
- El40 (6 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Rabbit)
- Ul22 (17 kDa, Protein from Rabbit)
- Ribosomal protein el43 (10 kDa, Protein from Rabbit)
- Ul2 (26 kDa, Protein from Rabbit)
- P-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- Us10 (11 kDa, Protein from Oryctolagus cuniculus)
- El22 (11 kDa, Protein from Oryctolagus cuniculus)
- X-box-binding protein 1 (Complex from Homo sapiens)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Rabbit)
- El14 (13 kDa, Protein from Rabbit)
- Ribosomal protein s11 (17 kDa, Protein from Rabbit)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Rabbit)
- El39 (6 kDa, Protein from Rabbit)
- Us2 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l11 (19 kDa, Protein from Rabbit)
- 40s ribosomal protein s27 (9 kDa, Protein from Rabbit)
- Mrna (Complex from Homo sapiens)
- Ribosomal protein l24 (14 kDa, Protein from Rabbit)
- Ul30 (26 kDa, Protein from Rabbit)
- Us14 (6 kDa, Protein from Rabbit)
- 40s ribosomal protein s12 (13 kDa, Protein from Rabbit)
- Es10 (11 kDa, Protein from Rabbit)
- Mrna (1 kDa, RNA from Homo sapiens)
- Ribosomal protein l15 (24 kDa, Protein from Rabbit)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Rabbit)
- Ul3 (45 kDa, Protein from Rabbit)
- Ribosomal protein l26 (15 kDa, Protein from Rabbit)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (48 kDa, RNA from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Rabbit)
- Ul11 (16 kDa, Protein from Rabbit)
- Magnesium ion (24 Da, Ligand)
- El33 (12 kDa, Protein from Rabbit)
- 40s ribosomal protein s3a (24 kDa, Protein from Rabbit)
- El8 (26 kDa, Protein from Rabbit)
- El28 (14 kDa, Protein from Rabbit)
- Ul4 (41 kDa, Protein from Rabbit)
- Us5 (24 kDa, Protein from Oryctolagus cuniculus)
- Us11 (14 kDa, Protein from Rabbit)
- Ul15 (16 kDa, Protein from Rabbit)
- X-box-binding protein 1 (2 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36 (11 kDa, Protein from Rabbit)
- Ribosomal protein l37 (10 kDa, Protein from Rabbit)
- El21 (18 kDa, Protein from Rabbit)
- Us13 (16 kDa, Protein from Rabbit)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l14 (16 kDa, Protein from Rabbit)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l6 (28 kDa, Protein from Rabbit)
- 18s ribosomal rna (548 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Rabbit)
- Ribosomal protein s3 (25 kDa, Protein from Rabbit)
- 40s ribosomal protein s4 (29 kDa, Protein from Rabbit)
- Ribosomal protein l10 (predicted) (23 kDa, Protein from Rabbit)
- 60s ribosomal protein l13 (24 kDa, Protein from Rabbit)
- 60s ribosomal protein l27 (15 kDa, Protein from Rabbit)
- El29 (12 kDa, Protein from Rabbit)
- El32 (15 kDa, Protein from Rabbit)
- El18 (21 kDa, Protein from Rabbit)
- Ribosomal protein s16 (16 kDa, Protein from Rabbit)
- Es19 (15 kDa, Protein from Rabbit)
- Es17 (15 kDa, Protein from Rabbit)
- Us17 (14 kDa, Protein from Rabbit)
- Ul23 (13 kDa, Protein from Rabbit)
- Ribosomal protein s5 (21 kDa, Protein from Rabbit)
- Ribosome (Complex from Oryctolagus cuniculus)
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Release date: July 10, 2019
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6r6g
Q-score: 0.358
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6r6g
Q-score: 0.358
Shanmuganathan V, Schiller N, Magoulopoulou A, Cheng J, Braunger K, Cymer F, Berninghausen O, Beatrix B, Kohno K, Heijne GV, Beckmann R
eLife (2019) 8 [ Pubmed: 31246176 DOI: doi:10.7554/eLife.46267 ]
Sample:
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Rabbit)
- 40s ribosomal protein s21 (9 kDa, Protein from Rabbit)
- E-trna (24 kDa, RNA from Baker's yeast)
- 60s ribosomal protein l22 (11 kDa, Protein from Rabbit)
- X-box-binding protein 1 (2 kDa, Protein from Homo sapiens)
- Ribosomal protein l37 (10 kDa, Protein from Rabbit)
- 5.8s ribosomal rna (48 kDa, RNA from Rabbit)
- Ribosomal protein s16 (16 kDa, Protein from Rabbit)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Rabbit)
- 40s ribosomal protein s6 (27 kDa, Protein from Rabbit)
- 60s ribosomal protein l36 (11 kDa, Protein from Rabbit)
- El30 (10 kDa, Protein from Rabbit)
- Ul11 (16 kDa, Protein from Rabbit)
- Ul15 (16 kDa, Protein from Rabbit)
- Ribosomal protein l14 (16 kDa, Protein from Rabbit)
- Ribosomal protein l11 (19 kDa, Protein from Rabbit)
- X-box-binding protein 1 (Complex from Homo sapiens)
- El29 (13 kDa, Protein from Rabbit)
- Us5 (24 kDa, Protein from Rabbit)
- Ribosomal protein s11 (17 kDa, Protein from Rabbit)
- Us13 (16 kDa, Protein from Rabbit)
- 40s ribosomal protein s14 (14 kDa, Protein from Rabbit)
- Ribosomal protein l10 (predicted) (24 kDa, Protein from Rabbit)
- El28 (14 kDa, Protein from Rabbit)
- 40s ribosomal protein s3a (24 kDa, Protein from Rabbit)
- Mrna encoding xbp1u (Complex from Homo sapiens)
- Ul3 (45 kDa, Protein from Rabbit)
- Signal recognition particle 54 kda protein (47 kDa, Protein from Dog)
- Us19 (14 kDa, Protein from Rabbit)
- Es31 (7 kDa, Protein from Rabbit)
- El14 (13 kDa, Protein from Rabbit)
- 40s ribosomal protein s12 (13 kDa, Protein from Rabbit)
- P- and e- site trna (Complex from Saccharomyces cerevisiae)
- Ul22 (17 kDa, Protein from Rabbit)
- Ul6 (21 kDa, Protein from Rabbit)
- Ribosomal protein us15 (17 kDa, Protein from Rabbit)
- Mrna (1 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Rabbit)
- 60s ribosomal protein l40 (6 kDa, Protein from Rabbit)
- El34 (12 kDa, Protein from Rabbit)
- 60s ribosomal protein l5 (34 kDa, Protein from Rabbit)
- Es19 (15 kDa, Protein from Rabbit)
- 40s ribosomal protein s8 (24 kDa, Protein from Rabbit)
- Ribosomal protein el43 (10 kDa, Protein from Rabbit)
- Ul4 (41 kDa, Protein from Rabbit)
- El8 (27 kDa, Protein from Rabbit)
- 60s ribosomal protein l6 (28 kDa, Protein from Rabbit)
- 18s ribosomal rna (548 kDa, RNA from Rabbit)
- El31 (12 kDa, Protein from Rabbit)
- Ribosomal protein l26 (15 kDa, Protein from Rabbit)
- Es17 (15 kDa, Protein from Rabbit)
- Signal recognition particle subunit srp19 (12 kDa, Protein from Dog)
- Signal recognition particle 9 kda protein (8 kDa, Protein from Dog)
- 60s ribosomal protein l38 (8 kDa, Protein from Rabbit)
- El18 (21 kDa, Protein from Rabbit)
- Signal sequence (hr2) (1 kDa, Protein from Human)
- 40s ribosomal protein s26 (11 kDa, Protein from Rabbit)
- 7s rna (66 kDa, RNA from Dog)
- 60s ribosomal protein l19 (21 kDa, Protein from Rabbit)
- El42 (12 kDa, Protein from Rabbit)
- Es10 (11 kDa, Protein from Rabbit)
- 28s ribosomal rna (1 MDa, RNA from Rabbit)
- Ribosomal protein s28 (7 kDa, Protein from Rabbit)
- El32 (15 kDa, Protein from Rabbit)
- Structure of xbp1u-paused nascent chain complex with srp. (Complex from Oryctolagus cuniculus)
- Structure of xbp1u-paused ribosome nascent chain complex with srp. (Complex)
- Ribosomal protein s3 (25 kDa, Protein from Rabbit)
- P-trna (24 kDa, RNA from Baker's yeast)
- 60s ribosomal protein l13 (24 kDa, Protein from Rabbit)
- Ul2 (26 kDa, Protein from Rabbit)
- 5s ribosomal rna (38 kDa, RNA from Rabbit)
- 40s ribosomal protein s27 (9 kDa, Protein from Rabbit)
- Zinc ion (65 Da, Ligand)
- Ul23 (13 kDa, Protein from Rabbit)
- Signal sequence (hr2) (Complex from Homo sapiens)
- Ribosomal protein s20 (11 kDa, Protein from Rabbit)
- Ribosomal protein l15 (24 kDa, Protein from Rabbit)
- Ribosomal protein s15a (14 kDa, Protein from Rabbit)
- El33 (12 kDa, Protein from Rabbit)
- 40s ribosomal protein s7 (21 kDa, Protein from Rabbit)
- Ribosomal protein rack1 (34 kDa, Protein from Rabbit)
- Us2 (24 kDa, Protein from Rabbit)
- Srp (Complex from Canis lupus familiaris)
- Us14 (6 kDa, Protein from Rabbit)
- Ribosomal protein s5 (21 kDa, Protein from Rabbit)
- Signal recognition particle subunit srp68 (23 kDa, Protein from Dog)
- Ribosomal protein s23 (15 kDa, Protein from Rabbit)
- Signal recognition particle 14 kda protein (10 kDa, Protein from Dog)
- 40s ribosomal protein s30 (6 kDa, Protein from Rabbit)
- 60s ribosomal protein l27 (15 kDa, Protein from Rabbit)
- Magnesium ion (24 Da, Ligand)
- El39 (6 kDa, Protein from Rabbit)
- El21 (18 kDa, Protein from Rabbit)
- 40s ribosomal protein s24 (14 kDa, Protein from Rabbit)
- 40s ribosomal protein s4 (29 kDa, Protein from Rabbit)
- Ribosomal protein l24 (14 kDa, Protein from Rabbit)
- Ul29 (14 kDa, Protein from Rabbit)
- 60s ribosomal protein l13a (23 kDa, Protein from Rabbit)
- El20 (20 kDa, Protein from Rabbit)
- Ul30 (26 kDa, Protein from Rabbit)
- Ribosomal protein es25 (8 kDa, Protein from Rabbit)
Structure of XBP1u-paused ribosome nascent chain complex (rotated state)
Release date: July 10, 2019
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6r6p
Q-score: 0.429
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6r6p
Q-score: 0.429
Shanmuganathan V, Schiller N, Magoulopoulou A, Cheng J, Braunger K, Cymer F, Berninghausen O, Beatrix B, Kohno K, Heijne GV, Beckmann R
eLife (2019) 8 [ DOI: doi:10.7554/eLife.46267 Pubmed: 31246176 ]
Sample:
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Es26 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (10 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
- Ul14 (13 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Es24 (14 kDa, Protein from Oryctolagus cuniculus)
- Us14 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul2 (26 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l12 (17 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- Us13 (16 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s3 (25 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- Mrna (3 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Es31 (7 kDa, Protein from Oryctolagus cuniculus)
- El34 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Structure of xbp1u-paused ribosome nascent chain complex (rotated state). (Complex from Oryctolagus cuniculus)
- El8 (27 kDa, Protein from Oryctolagus cuniculus)
- El19 (21 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- A/p-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- A/p- and p/e- site trna (Cellular component from Saccharomyces cerevisiae)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (28 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Us2 (24 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (548 kDa, RNA from Oryctolagus cuniculus)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l14 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s16 (16 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es25 (8 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (6 kDa, Protein from Oryctolagus cuniculus)
- Mrna (Cellular component from Homo sapiens)
- Ribosomal protein l22 (11 kDa, Protein from Oryctolagus cuniculus)
- Us10 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- El40 (6 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (8 kDa, Protein from Oryctolagus cuniculus)
- X-box-binding protein 1 (Cellular component from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (21 kDa, Protein from Oryctolagus cuniculus)
- Us5 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l24 (7 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (24 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l10 (predicted) (24 kDa, Protein from Oryctolagus cuniculus)
- Structure of xbp1u-paused ribosome nascent chain complex (rotated state). (Complex)
- X-box-binding protein 1 (2 kDa, Protein from Homo sapiens)
- Ul4 (41 kDa, Protein from Oryctolagus cuniculus)
- Us11 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el39 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- Es19 (15 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- El28 (14 kDa, Protein from Oryctolagus cuniculus)
- P/e-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul5 (19 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Es10 (11 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s11 (17 kDa, Protein from Oryctolagus cuniculus)
- S29 (6 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- El30 (10 kDa, Protein from Oryctolagus cuniculus)
Structure of XBP1u-paused ribosome nascent chain complex with Sec61.
Release date: July 10, 2019
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6r7q
Q-score: 0.34
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6r7q
Q-score: 0.34
Shanmuganathan V, Schiller N, Magoulopoulou A, Cheng J, Braunger K, Cymer F, Berninghausen O, Beatrix B, Kohno K, Heijne GV, Beckmann R
eLife (2019) 8 [ DOI: doi:10.7554/eLife.46267 Pubmed: 31246176 ]
Sample:
- E-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- Es26 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (10 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (13 kDa, Protein from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosome (Complex from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s12 (13 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- Structure of xbp1u-paused ribosome nascent chain complex with sec61. (Complex)
- 40s ribosomal protein s6 (27 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Es24 (14 kDa, Protein from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- El30 (10 kDa, Protein from Oryctolagus cuniculus)
- Us13 (16 kDa, Protein from Oryctolagus cuniculus)
- Ul6 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s3 (25 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- Es31 (7 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- El34 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein rack1 (34 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- P-trna (24 kDa, RNA from Saccharomyces cerevisiae)
- El19 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (21 kDa, Protein from Oryctolagus cuniculus)
- El31 (12 kDa, Protein from Oryctolagus cuniculus)
- El28 (14 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- El22 (11 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit alpha isoform 1 (50 kDa, Protein from Canis lupus familiaris)
- Ul2 (26 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l11 (19 kDa, Protein from Oryctolagus cuniculus)
- Es17 (15 kDa, Protein from Oryctolagus cuniculus)
- Us2 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit gamma (7 kDa, Protein from Canis lupus familiaris)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- Sec61 (Cellular component from Canis lupus familiaris)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Ul11 (16 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- El8 (27 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l14 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s16 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein es25 (8 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (21 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (6 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit beta (3 kDa, Protein from Canis lupus familiaris)
- Mrna (Cellular component from Homo sapiens)
- Us10 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (48 kDa, RNA from Oryctolagus cuniculus)
- El40 (6 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (28 kDa, Protein from Oryctolagus cuniculus)
- X-box-binding protein 1 (Cellular component from Homo sapiens)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l24 (14 kDa, Protein from Oryctolagus cuniculus)
- Messenger rna (1 kDa, RNA from Homo sapiens)
- 40s ribosomal protein s7 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- Us5 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (24 kDa, Protein from Oryctolagus cuniculus)
- Trna (Cellular component from Saccharomyces cerevisiae)
- Ribosomal protein l10 (predicted) (24 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- X-box-binding protein 1 (2 kDa, Protein from Homo sapiens)
- Ul4 (41 kDa, Protein from Oryctolagus cuniculus)
- Us11 (14 kDa, Protein from Oryctolagus cuniculus)
- Es19 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein el43 (10 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Es10 (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- 18s ribosomal rna (548 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein s11 (17 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- Us19 (14 kDa, Protein from Oryctolagus cuniculus)
- El14 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- El29 (13 kDa, Protein from Oryctolagus cuniculus)