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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"POTASSIUM ION" AND author_name:"Atanassov I" AND resolution:[2 TO 3}

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EMD-13555

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Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation a

Release date: June 15, 2022
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 7pnx
Q-score: 0.603

Itoh Y, Khawaja A, Laptev I, Cipullo M, Atanassov I, Sergiev P, Rorbach J, Amunts A

Nature (2022) 606 pp. 603-608 [ DOI: doi:10.1038/s41586-022-04795-x Pubmed: 35676484 ]

Sample:

28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Homo sapiens)
28s ribosomal protein s27, mitochondrial (47 kDa, Protein from Homo sapiens)
Assembly intermediate of small subunit of human mitochondrial ribosome (Complex from Homo sapiens)
28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Homo sapiens)
28s ribosomal protein s31, mitochondrial (45 kDa, Protein from Homo sapiens)
28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Homo sapiens)
Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Homo sapiens)
28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Homo sapiens)
28s ribosomal protein s26, mitochondrial (24 kDa, Protein from Homo sapiens)
Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Homo sapiens)
28s ribosomal protein s29, mitochondrial (45 kDa, Protein from Homo sapiens)
28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Homo sapiens)
Guanosine-5'-diphosphate (443 Da, Ligand)
Potassium ion (39 Da, Ligand)
28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Homo sapiens)
28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Homo sapiens)
Zinc ion (65 Da, Ligand)
Aurora kinase a-interacting protein (22 kDa, Protein from Homo sapiens)
28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Homo sapiens)
28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Homo sapiens)
Adenosine-5'-triphosphate (507 Da, Ligand)
12s mitochondrial rrna (306 kDa, RNA from Homo sapiens)
S-adenosyl-l-homocysteine (384 Da, Ligand)
28s ribosomal protein s5, mitochondrial (48 kDa, Protein from Homo sapiens)
28s ribosomal protein s2, mitochondrial (33 kDa, Protein from Homo sapiens)
Water (18 Da, Ligand)
28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Homo sapiens)
28s ribosomal protein s35, mitochondrial (36 kDa, Protein from Homo sapiens)
Magnesium ion (24 Da, Ligand)
28s ribosomal protein s28, mitochondrial (20 kDa, Protein from Homo sapiens)
28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Homo sapiens)
28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Homo sapiens)
Putative ribosome-binding factor a, mitochondrial (38 kDa, Protein from Homo sapiens)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Homo sapiens)
28s ribosomal protein s22, mitochondrial (41 kDa, Protein from Homo sapiens)
28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Homo sapiens)
28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Homo sapiens)
12s rrna n4-methylcytidine (m4c) methyltransferase (46 kDa, Protein from Homo sapiens)

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EMD-13558

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Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and IF3

Release date: June 15, 2022
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7po0
Q-score: 0.587

Itoh Y, Khawaja A, Laptev I, Cipullo M, Atanassov I, Sergiev P, Rorbach J, Amunts A

Nature (2022) 606 pp. 603-608 [ DOI: doi:10.1038/s41586-022-04795-x Pubmed: 35676484 ]

Sample:

28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Homo sapiens)
28s ribosomal protein s27, mitochondrial (47 kDa, Protein from Homo sapiens)
Mitochondrial translational initiation factor 3, isoform cra_a (31 kDa, Protein from Homo sapiens)
Assembly intermediate of small subunit of human mitochondrial ribosome (Complex from Homo sapiens)
28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Homo sapiens)
28s ribosomal protein s31, mitochondrial (45 kDa, Protein from Homo sapiens)
28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Homo sapiens)
Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Homo sapiens)
28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Homo sapiens)
28s ribosomal protein s26, mitochondrial (24 kDa, Protein from Homo sapiens)
Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Homo sapiens)
28s ribosomal protein s29, mitochondrial (45 kDa, Protein from Homo sapiens)
28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Homo sapiens)
Guanosine-5'-diphosphate (443 Da, Ligand)
Potassium ion (39 Da, Ligand)
28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Homo sapiens)
28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Homo sapiens)
Zinc ion (65 Da, Ligand)
Aurora kinase a-interacting protein (22 kDa, Protein from Homo sapiens)
28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Homo sapiens)
28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Homo sapiens)
Adenosine-5'-triphosphate (507 Da, Ligand)
12s mitochondrial rrna (306 kDa, RNA from Homo sapiens)
28s ribosomal protein s5, mitochondrial (48 kDa, Protein from Homo sapiens)
28s ribosomal protein s2, mitochondrial (33 kDa, Protein from Homo sapiens)
Water (18 Da, Ligand)
28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Homo sapiens)
28s ribosomal protein s35, mitochondrial (36 kDa, Protein from Homo sapiens)
Magnesium ion (24 Da, Ligand)
28s ribosomal protein s28, mitochondrial (20 kDa, Protein from Homo sapiens)
28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Homo sapiens)
28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Homo sapiens)
Putative ribosome-binding factor a, mitochondrial (38 kDa, Protein from Homo sapiens)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Homo sapiens)
28s ribosomal protein s22, mitochondrial (41 kDa, Protein from Homo sapiens)
28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Homo sapiens)
28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Homo sapiens)

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EMD-13559

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Initiation complex of human mitochondrial ribosome small subunit with IF3

Release date: June 15, 2022
Resolution: 2.92 Å
EM Method: Single-particle
Fitted PDBs: 7po1
Q-score: 0.578

Itoh Y, Khawaja A, Laptev I, Cipullo M, Atanassov I, Sergiev P, Rorbach J, Amunts A

Nature (2022) 606 pp. 603-608 [ DOI: doi:10.1038/s41586-022-04795-x Pubmed: 35676484 ]

Sample:

Potassium ion (39 Da, Ligand)
28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Homo sapiens)
28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Homo sapiens)
28s ribosomal protein s22, mitochondrial (41 kDa, Protein from Homo sapiens)
28s ribosomal protein s5, mitochondrial (48 kDa, Protein from Homo sapiens)
28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Homo sapiens)
Mitochondrial translational initiation factor 3, isoform cra_a (31 kDa, Protein from Homo sapiens)
28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Homo sapiens)
12s mitochondrial rrna (306 kDa, RNA from Homo sapiens)
28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Homo sapiens)
Adenosine-5'-triphosphate (507 Da, Ligand)
Magnesium ion (24 Da, Ligand)
Small subunit of human mitochondrial ribosome in complex with initiation factor 3 (Complex from Homo sapiens)
Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Homo sapiens)
28s ribosomal protein s29, mitochondrial (45 kDa, Protein from Homo sapiens)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Homo sapiens)
28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Homo sapiens)
28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Homo sapiens)
Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Homo sapiens)
28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Homo sapiens)
28s ribosomal protein s26, mitochondrial (24 kDa, Protein from Homo sapiens)
Aurora kinase a-interacting protein (22 kDa, Protein from Homo sapiens)
28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Homo sapiens)
Guanosine-5'-diphosphate (443 Da, Ligand)
28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Homo sapiens)
28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Homo sapiens)
28s ribosomal protein s28, mitochondrial (20 kDa, Protein from Homo sapiens)
Zinc ion (65 Da, Ligand)
28s ribosomal protein s35, mitochondrial (36 kDa, Protein from Homo sapiens)
28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Homo sapiens)
28s ribosomal protein s2, mitochondrial (33 kDa, Protein from Homo sapiens)
28s ribosomal protein s27, mitochondrial (47 kDa, Protein from Homo sapiens)
28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Homo sapiens)
Water (18 Da, Ligand)
28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Homo sapiens)
28s ribosomal protein s31, mitochondrial (45 kDa, Protein from Homo sapiens)
28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Homo sapiens)

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EMD-13561

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Human mitochondrial ribosome small subunit

Release date: June 15, 2022
Resolution: 2.92 Å
EM Method: Single-particle
Fitted PDBs: 7po3
Q-score: 0.593

Itoh Y, Khawaja A, Laptev I, Cipullo M, Atanassov I, Sergiev P, Rorbach J, Amunts A

Nature (2022) 606 pp. 603-608 [ DOI: doi:10.1038/s41586-022-04795-x Pubmed: 35676484 ]

Sample:

Potassium ion (39 Da, Ligand)
28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Homo sapiens)
28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Homo sapiens)
28s ribosomal protein s22, mitochondrial (41 kDa, Protein from Homo sapiens)
28s ribosomal protein s5, mitochondrial (48 kDa, Protein from Homo sapiens)
28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Homo sapiens)
12s mitochondrial rrna (306 kDa, RNA from Homo sapiens)
28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Homo sapiens)
Adenosine-5'-triphosphate (507 Da, Ligand)
Magnesium ion (24 Da, Ligand)
Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Homo sapiens)
28s ribosomal protein s29, mitochondrial (45 kDa, Protein from Homo sapiens)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Homo sapiens)
28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Homo sapiens)
28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Homo sapiens)
Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Homo sapiens)
Small subunit of human mitochondrial ribosome (Complex from Homo sapiens)
28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Homo sapiens)
28s ribosomal protein s26, mitochondrial (24 kDa, Protein from Homo sapiens)
Aurora kinase a-interacting protein (22 kDa, Protein from Homo sapiens)
28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Homo sapiens)
Guanosine-5'-diphosphate (443 Da, Ligand)
28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Homo sapiens)
28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Homo sapiens)
28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Homo sapiens)
28s ribosomal protein s28, mitochondrial (20 kDa, Protein from Homo sapiens)
Zinc ion (65 Da, Ligand)
28s ribosomal protein s35, mitochondrial (36 kDa, Protein from Homo sapiens)
28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Homo sapiens)
28s ribosomal protein s2, mitochondrial (33 kDa, Protein from Homo sapiens)
28s ribosomal protein s27, mitochondrial (47 kDa, Protein from Homo sapiens)
28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Homo sapiens)
Water (18 Da, Ligand)
28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Homo sapiens)
28s ribosomal protein s31, mitochondrial (45 kDa, Protein from Homo sapiens)
28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Homo sapiens)

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EMD-13562

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Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)

Release date: June 15, 2022
Resolution: 2.56 Å
EM Method: Single-particle
Fitted PDBs: 7po4
Q-score: 0.595

Itoh Y, Khawaja A, Laptev I, Cipullo M, Atanassov I, Sergiev P, Rorbach J, Amunts A

Nature (2022) 606 pp. 603-608 [ DOI: doi:10.1038/s41586-022-04795-x Pubmed: 35676484 ]

Sample:

39s ribosomal protein l48, mitochondrial (23 kDa, Protein from Homo sapiens)
39s ribosomal protein l28, mitochondrial (30 kDa, Protein from Homo sapiens)
Potassium ion (39 Da, Ligand)
39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Homo sapiens)
39s ribosomal protein l18, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein s30, mitochondrial (50 kDa, Protein from Homo sapiens)
39s ribosomal protein l21, mitochondrial (22 kDa, Protein from Homo sapiens)
39s ribosomal protein l40, mitochondrial (24 kDa, Protein from Homo sapiens)
39s ribosomal protein l46, mitochondrial (31 kDa, Protein from Homo sapiens)
39s ribosomal protein l49, mitochondrial (19 kDa, Protein from Homo sapiens)
16srrna (500 kDa, RNA from Homo sapiens)
39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Homo sapiens)
39s ribosomal protein l19, mitochondrial (33 kDa, Protein from Homo sapiens)
Growth arrest and dna damage-inducible proteins-interacting protein 1 (25 kDa, Protein from Homo sapiens)
39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Homo sapiens)
Magnesium ion (24 Da, Ligand)
39s ribosomal protein l17, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Homo sapiens)
39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Homo sapiens)
39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Homo sapiens)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Acyl carrier protein, mitochondrial (17 kDa, Protein from Homo sapiens)
S-[2-({n-[(2r)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate (540 Da, Ligand)
39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Homo sapiens)
39s ribosomal protein l14, mitochondrial (15 kDa, Protein from Homo sapiens)
39s ribosomal protein l37, mitochondrial (48 kDa, Protein from Homo sapiens)
39s ribosomal protein l53, mitochondrial (12 kDa, Protein from Homo sapiens)
Ribosomal protein 63, mitochondrial (12 kDa, Protein from Homo sapiens)
39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Homo sapiens)
Assembly intermediate of the large subunit of human mitochondrial ribosome (Complex from Homo sapiens)
Trnaval (22 kDa, RNA from Homo sapiens)
39s ribosomal protein l47, mitochondrial (29 kDa, Protein from Homo sapiens)
39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Homo sapiens)
39s ribosomal protein l27, mitochondrial (16 kDa, Protein from Homo sapiens)
39s ribosomal protein l42, mitochondrial (16 kDa, Protein from Homo sapiens)
Mitochondrial assembly of ribosomal large subunit protein 1 (26 kDa, Protein from Homo sapiens)
39s ribosomal protein l10, mitochondrial (29 kDa, Protein from Homo sapiens)
Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Homo sapiens)
39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Homo sapiens)
39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Homo sapiens)
39s ribosomal protein l4, mitochondrial (34 kDa, Protein from Homo sapiens)
39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Homo sapiens)
Zinc ion (65 Da, Ligand)
39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from Homo sapiens)
39s ribosomal protein l20, mitochondrial (17 kDa, Protein from Homo sapiens)
39s ribosomal protein l45, mitochondrial (35 kDa, Protein from Homo sapiens)
39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Homo sapiens)
39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Homo sapiens)
39s ribosomal protein l50, mitochondrial (18 kDa, Protein from Homo sapiens)
39s ribosomal protein l12, mitochondrial (21 kDa, Protein from Homo sapiens)
39s ribosomal protein l39, mitochondrial (38 kDa, Protein from Homo sapiens)
Water (18 Da, Ligand)
Mief1 upstream open reading frame protein (8 kDa, Protein from Homo sapiens)
39s ribosomal protein l22, mitochondrial (23 kDa, Protein from Homo sapiens)
39s ribosomal protein l32, mitochondrial (21 kDa, Protein from Homo sapiens)
39s ribosomal protein l3, mitochondrial (38 kDa, Protein from Homo sapiens)
39s ribosomal protein l11, mitochondrial (20 kDa, Protein from Homo sapiens)
39s ribosomal protein l43, mitochondrial (23 kDa, Protein from Homo sapiens)
39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Homo sapiens)
39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Homo sapiens)
39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Homo sapiens)
39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Homo sapiens)

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Showing 1 - 5 of 5. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [5]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: