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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"PROLINE" AND structure_determination_method:"singleparticle" AND assembly_molecular_weight:{1000000 TO 2000000]

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EMD-15533

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Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit

Release date: March 8, 2023
Resolution: 2.1 Å
EM Method: Single-particle
Fitted PDBs: 8ana
Q-score: 0.695

Koller TO, Morici M, Berger M, Safdari HA, Lele DS, Beckert B, Kaur KJ, Wilson DN

Nat Chem Biol (2023) 19 pp. 1072-1081 [ DOI: doi:10.1038/s41589-023-01293-7 Pubmed: 36997646 ]

Sample:

50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli BW25113)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli BW25113)
5s ribosomal rna (38 kDa, RNA from Escherichia coli BW25113)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli BW25113)
Spermine (202 Da, Ligand)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli BW25113)
Cryo-em structure of the proline-rich antimicrobial peptide drosocin bound to the 50s ribosomal subunit (1 MDa, Complex from Escherichia coli K-12)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli BW25113)
Zinc ion (65 Da, Ligand)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli BW25113)
2-acetamido-2-deoxy-alpha-d-galactopyranose (221 Da, Ligand)
50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli BW25113)
Drosocin1 (2 kDa, Protein from Drosophila melanogaster)
23s ribosomal rna (941 kDa, RNA from Escherichia coli BW25113)
Water (18 Da, Ligand)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli BW25113)
50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli BW25113)

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EMD-10132

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cryo-EM structure of mTORC1 bound to PRAS40-fused active RagA/C GTPases

Release date: Oct. 16, 2019
Resolution: 5.5 Å
EM Method: Single-particle
Fitted PDBs: 6sb0
Q-score: 0.237

Anandapadamanaban M, Masson GR, Perisic O, Berndt A, Kaufman J, Johnson CM, Santhanam B, Rogala KB, Sabatini DM, Williams RL

Science (2019) 366 pp. 203-210 [ Pubmed: 31601764 DOI: doi:10.1126/science.aax3939 ]

Sample:

Guanosine-5'-diphosphate (443 Da, Ligand)
Raga/c (Complex from Homo sapiens)
Guanosine-5'-triphosphate (523 Da, Ligand)
Ras-related gtp-binding protein c (44 kDa, Protein from Homo sapiens)
Proline-rich akt1 substrate 1 (27 kDa, Protein from Homo sapiens)
Ras-related gtp-binding protein a (36 kDa, Protein from Homo sapiens)
Mtor,serine/threonine-protein kinase mtor,mtor,serine/threonine-protein kinase mtor (287 kDa, Protein from Homo sapiens)
Mtorc1 (Complex from Homo sapiens)
Regulatory-associated protein of mtor (149 kDa, Protein from Homo sapiens)
Cryoem structure of mtorc1 bound to raga/c complex (1 MDa, Complex)
Target of rapamycin complex subunit lst8 (35 kDa, Protein from Homo sapiens)

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EMD-0322

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TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel

Release date: Dec. 5, 2018
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6i0y
Q-score: 0.305

Tian P, Steward A, Kudva R, Su T, Shilling PJ, Nickson AA, Hollins JJ, Beckmann R, von Heijne G, Clarke J, Best RB

PNAS (2018) 115 pp. E11284-E11293 [ Pubmed: 30413621 DOI: doi:10.1073/pnas.1810523115 ]

Sample:

Tryptophanase operon leader peptide (Complex from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
Tryptophanase operon leader peptide (2 kDa, Protein from Escherichia coli)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
Titin nascent chain (Complex from Homo sapiens)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
Titin (9 kDa, Protein from Homo sapiens)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
5s ribosomal rna (38 kDa, RNA from Escherichia coli)
Proline trna (24 kDa, RNA from Escherichia coli)
50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
Water (18 Da, Ligand)
50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l7/l12 (12 kDa, Protein from Escherichia coli)
Ribosome (Complex from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l9 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
23s ribosomal rna (941 kDa, RNA from Escherichia coli)
50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
Tnac-stalled ribosome complex with the titin i27 domain folding close to the ribosomal exit tunnel (Complex)
Tryptophan (204 Da, Ligand)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)

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Sort by: Download

Showing 1 - 3 of 3. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [3]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: