Plant mitochondrial respiratory complex I
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7a23
Q-score: 0.338
Soufari H, Parrot C, Kuhn L, Waltz F, Hashem Y
Nat Commun (2020) 11 pp. 5195-5195 [ DOI: doi:10.1038/s41467-020-18814-w Pubmed: 33060577 ]
- Acpm2 (14 kDa, Protein from Wild cabbage)
- Ca1 (30 kDa, Protein from Wild cabbage)
- B13 (19 kDa, Protein from Wild cabbage)
- P1 (11 kDa, Protein from Wild cabbage)
- 75kda (81 kDa, Protein from Wild cabbage)
- 13kda (12 kDa, Protein from Wild cabbage)
- Nad6m (23 kDa, Protein from Wild cabbage)
- B14 (15 kDa, Protein from Wild cabbage)
- Nad4lm (11 kDa, Protein from Wild cabbage)
- B15 (8 kDa, Protein from Wild cabbage)
- Nad9m (22 kDa, Protein from Wild cabbage)
- 20.9kda (11 kDa, Protein from Wild cabbage)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Ubiquinone-10 (863 Da, Ligand)
- Nad2m (55 kDa, Protein from Wild cabbage)
- Flavin mononucleotide (456 Da, Ligand)
- P2 (11 kDa, Protein from Wild cabbage)
- B8 (10 kDa, Protein from Wild cabbage)
- Cal1 (27 kDa, Protein from Wild cabbage)
- Nad5m (74 kDa, Protein from Wild cabbage)
- 39kda (43 kDa, Protein from Wild cabbage)
- 24kda (28 kDa, Protein from Wild cabbage)
- B14.5b (9 kDa, Protein from Wild cabbage)
- Mwfe (7 kDa, Protein from Wild cabbage)
- Nad4m (55 kDa, Protein from Wild cabbage)
- Nad3m (13 kDa, Protein from Wild cabbage)
- B22 (13 kDa, Protein from Wild cabbage)
- Tyky (25 kDa, Protein from Wild cabbage)
- B18 (11 kDa, Protein from Wild cabbage)
- Psst (24 kDa, Protein from Wild cabbage)
- 15kda (9 kDa, Protein from Wild cabbage)
- Unk1 (1 kDa, Protein from Wild cabbage)
- Mitochondrial respiratory complex i (Complex from Brassica oleracea)
- B12-1 (8 kDa, Protein from Wild cabbage)
- Phosphatidylinositol (887 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Nad1m (36 kDa, Protein from Wild cabbage)
- Unk2 (1 kDa, Protein from Wild cabbage)
- Bicarbonate ion (61 Da, Ligand)
- Pdsw (12 kDa, Protein from Wild cabbage)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Esss (12 kDa, Protein from Wild cabbage)
- Cardiolipin (1 kDa, Ligand)
- 51kda (53 kDa, Protein from Wild cabbage)
- B9 (6 kDa, Protein from Wild cabbage)
- 18kda (17 kDa, Protein from Wild cabbage)
- Aggg (7 kDa, Protein from Wild cabbage)
- (1s)-2-{[(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (720 Da, Ligand)
- B14.5a (15 kDa, Protein from Wild cabbage)
- Iron/sulfur cluster (351 Da, Ligand)
- Nad7m (45 kDa, Protein from Wild cabbage)
- Acpm1 (13 kDa, Protein from Wild cabbage)
- Pgiv (11 kDa, Protein from Wild cabbage)
- B17.2 (18 kDa, Protein from Wild cabbage)
- B16.6 (16 kDa, Protein from Wild cabbage)
Assembly intermediate of the plant mitochondrial complex I
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7a24
Q-score: 0.207
Soufari H, Parrot C, Kuhn L, Waltz F, Hashem Y
Nat Commun (2020) 11 pp. 5195-5195 [ DOI: doi:10.1038/s41467-020-18814-w Pubmed: 33060577 ]
- Nad6m (23 kDa, Protein from Brassica oleracea)
- 39kda (43 kDa, Protein from Brassica oleracea)
- B14 (15 kDa, Protein from Brassica oleracea)
- Cardiolipin (1 kDa, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Tyky (25 kDa, Protein from Brassica oleracea)
- 75kda (81 kDa, Protein from Brassica oleracea)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- 24kda (28 kDa, Protein from Brassica oleracea)
- B16.6 (16 kDa, Protein from Brassica oleracea)
- Cal1 (27 kDa, Protein from Brassica oleracea)
- Mwfe (7 kDa, Protein from Brassica oleracea)
- Nad4lm (11 kDa, Protein from Brassica oleracea)
- Pgiv (11 kDa, Protein from Brassica oleracea)
- Phosphatidylinositol (887 Da, Ligand)
- 13kda (12 kDa, Protein from Brassica oleracea)
- Nad2m (55 kDa, Protein from Brassica oleracea)
- Flavin mononucleotide (456 Da, Ligand)
- Unk1 (1 kDa, Protein from Brassica oleracea)
- Iron/sulfur cluster (351 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Gldh (68 kDa, Protein from Brassica oleracea)
- (1s)-2-{[(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (720 Da, Ligand)
- Nad7m (45 kDa, Protein from Brassica oleracea)
- 51kda (53 kDa, Protein from Brassica oleracea)
- B13 (19 kDa, Protein from Brassica oleracea)
- B17.2 (18 kDa, Protein from Brassica oleracea)
- Acpm1 (13 kDa, Protein from Brassica oleracea)
- P2 (11 kDa, Protein from Brassica oleracea)
- Nad1m (36 kDa, Protein from Brassica oleracea)
- Plant mitochondrial respiratory complex i assembly intermediate in presence of gldh (Complex from Brassica oleracea)
- 18kda (17 kDa, Protein from Brassica oleracea)
- Mnll (11 kDa, Protein from Brassica oleracea)
- Nad9m (22 kDa, Protein from Brassica oleracea)
- Psst (24 kDa, Protein from Brassica oleracea)
- B8 (10 kDa, Protein from Brassica oleracea)
- B14.5b (9 kDa, Protein from Brassica oleracea)
- 15kda (9 kDa, Protein from Brassica oleracea)
- B14.5a (15 kDa, Protein from Brassica oleracea)
- Nad3m (13 kDa, Protein from Brassica oleracea)
- B9 (6 kDa, Protein from Brassica oleracea)
- Bicarbonate ion (61 Da, Ligand)
- Ca1 (30 kDa, Protein from Brassica oleracea)
Cryo-EM structure of respiratory complex I from Yarrowia lipolytica
Resolution: 4.32 Å
EM Method: Single-particle
Fitted PDBs: 6gcs
Q-score: 0.371
Parey K, Brandt U, Xie H, Mills DJ, Siegmund K, Vonck J, Kuehlbrandt W, Zickermann V
eLife (2018) 7 [ DOI: doi:10.7554/eLife.39213 Pubmed: 30277212 ]
- Flavin mononucleotide (456 Da, Ligand)
- Nunm subunit (7 kDa, Protein from Yarrowia lipolytica)
- Cardiolipin (1 kDa, Ligand)
- Acpm1 subunit (12 kDa, Protein from Yarrowia lipolytica)
- Nuum subunit (3 kDa, Protein from Yarrowia lipolytica)
- Mitochondrial nadh:ubiquinone oxidoreductase (963 MDa, Complex from Yarrowia lipolytica)
- 49-kda protein (nucm) (52 kDa, Protein from Yarrowia lipolytica)
- Ni2m subunit (12 kDa, Protein from Yarrowia lipolytica)
- Nuxm subunit (18 kDa, Protein from Yarrowia lipolytica)
- 1,2-diacyl-sn-glycero-3-phosphoethanolamine (748 Da, Ligand)
- Nebm subunit (5 kDa, Protein from Yarrowia lipolytica)
- Acpm2 subunit (14 kDa, Protein from Yarrowia lipolytica)
- 24-kda subunit (nuhm) (27 kDa, Protein from Yarrowia lipolytica)
- Nb5m subunit (10 kDa, Protein from Yarrowia lipolytica)
- Unknown subunit (4 kDa, Protein from Yarrowia lipolytica)
- Nipm subunit (10 kDa, Protein from Yarrowia lipolytica)
- Nb8m subunit (11 kDa, Protein from Yarrowia lipolytica)
- Nesm subunit (13 kDa, Protein from Yarrowia lipolytica)
- N7bm subunit (16 kDa, Protein from Yarrowia lipolytica)
- Nufm subunit (16 kDa, Protein from Yarrowia lipolytica)
- Niam subunit (8 kDa, Protein from Yarrowia lipolytica)
- Numm subunit (15 kDa, Protein from Yarrowia lipolytica)
- Nidm subunit (11 kDa, Protein from Yarrowia lipolytica)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nupm subunit (19 kDa, Protein from Yarrowia lipolytica)
- 30-kda protein (nugm) (32 kDa, Protein from Yarrowia lipolytica)
- Nuym subunit (18 kDa, Protein from Yarrowia lipolytica)
- Nd3 subunit (nu3m) (14 kDa, Protein from Yarrowia lipolytica)
- Nujm subunit (20 kDa, Protein from Yarrowia lipolytica)
- Iron/sulfur cluster (351 Da, Ligand)
- Nimm subunit (9 kDa, Protein from Yarrowia lipolytica)
- Nd4 subunit (nu4m) (54 kDa, Protein from Yarrowia lipolytica)
- S-[2-({n-[(2s)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate (568 Da, Ligand)
- Nuzm subunit (11 kDa, Protein from Yarrowia lipolytica)
- Tyky subunit (nuim) (25 kDa, Protein from Yarrowia lipolytica)
- Nd4l subunit (nulm) (9 kDa, Protein from Yarrowia lipolytica)
- Psst subunit (nukm) (23 kDa, Protein from Yarrowia lipolytica)
- Ni9m subunit (7 kDa, Protein from Yarrowia lipolytica)
- Nd2 subunit (nu2m) (53 kDa, Protein from Yarrowia lipolytica)
- Zinc ion (65 Da, Ligand)
- Nuem subunit (42 kDa, Protein from Yarrowia lipolytica)
- Nb4m subunit (14 kDa, Protein from Yarrowia lipolytica)
- 51-kda protein (nubm) (53 kDa, Protein from Yarrowia lipolytica)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Nb6m subunit (14 kDa, Protein from Yarrowia lipolytica)
- Nd1 subunit (nu1m) (38 kDa, Protein from Yarrowia lipolytica)
- Nd5 subunit (nu5m) (73 kDa, Protein from Yarrowia lipolytica)
- Nd6 subunit (nu6m) (20 kDa, Protein from Yarrowia lipolytica)
- Ni8m subunit (9 kDa, Protein from Yarrowia lipolytica)
- Nb2m subunit (6 kDa, Protein from Yarrowia lipolytica)
- 75-kda protein (nuam) (79 kDa, Protein from Yarrowia lipolytica)